Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05760 and PGA1_c05770 overlap by 4 nucleotides PGA1_c05770 and PGA1_c05780 are separated by 183 nucleotides PGA1_c05780 and PGA1_c05790 are separated by 148 nucleotides
PGA1_c05760: PGA1_c05760 - putative tyrosine recombinase XerC, at 589,712 to 590,647
_c05760
PGA1_c05770: PGA1_c05770 - Uncharacterized protein conserved in bacteria, at 590,644 to 591,351
_c05770
PGA1_c05780: PGA1_c05780 - transaldolase Tal, at 591,535 to 592,188
_c05780
PGA1_c05790: PGA1_c05790 - primosomal protein N, at 592,337 to 594,532
_c05790
Position (kb) 591
592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 590.549 kb on + strand, within PGA1_c05760 at 590.557 kb on - strand at 590.564 kb on - strand at 590.705 kb on + strand at 590.713 kb on - strand at 590.949 kb on - strand, within PGA1_c05770 at 590.956 kb on + strand, within PGA1_c05770 at 590.958 kb on + strand, within PGA1_c05770 at 590.971 kb on - strand, within PGA1_c05770 at 590.992 kb on - strand, within PGA1_c05770 at 591.038 kb on + strand, within PGA1_c05770 at 591.038 kb on + strand, within PGA1_c05770 at 591.038 kb on + strand, within PGA1_c05770 at 591.085 kb on + strand, within PGA1_c05770 at 591.093 kb on - strand, within PGA1_c05770 at 591.110 kb on - strand, within PGA1_c05770 at 591.243 kb on + strand, within PGA1_c05770 at 591.311 kb on + strand at 591.352 kb on - strand at 591.365 kb on - strand at 591.368 kb on + strand at 591.368 kb on + strand at 591.387 kb on + strand at 591.397 kb on - strand at 591.452 kb on + strand at 591.457 kb on + strand at 591.457 kb on + strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.465 kb on - strand at 591.465 kb on - strand at 591.516 kb on - strand at 592.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 590,549 + PGA1_c05760 0.89 -0.2 590,557 - -0.7 590,564 - -1.2 590,705 + -2.9 590,713 - -3.5 590,949 - PGA1_c05770 0.43 -1.2 590,956 + PGA1_c05770 0.44 -3.2 590,958 + PGA1_c05770 0.44 -2.2 590,971 - PGA1_c05770 0.46 -1.7 590,992 - PGA1_c05770 0.49 -0.4 591,038 + PGA1_c05770 0.56 -2.3 591,038 + PGA1_c05770 0.56 -3.6 591,038 + PGA1_c05770 0.56 -2.9 591,085 + PGA1_c05770 0.62 -2.2 591,093 - PGA1_c05770 0.63 -0.8 591,110 - PGA1_c05770 0.66 -1.4 591,243 + PGA1_c05770 0.85 +0.1 591,311 + -2.0 591,352 - +0.3 591,365 - +1.0 591,368 + +1.5 591,368 + +0.1 591,387 + +1.5 591,397 - +1.7 591,452 + +1.1 591,457 + +0.4 591,457 + +0.6 591,460 - +0.4 591,460 - +0.0 591,460 - +1.3 591,460 - -1.0 591,465 - +1.1 591,465 - +1.4 591,516 - +0.8 592,217 - -2.2
Or see this region's nucleotide sequence