Experiment: Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0551 and Psest_0552 are separated by 82 nucleotides Psest_0552 and Psest_0553 are separated by 304 nucleotides Psest_0553 and Psest_0554 are separated by 0 nucleotides
Psest_0551: Psest_0551 - PEP phosphonomutase and related enzymes, at 604,706 to 605,569
_0551
Psest_0552: Psest_0552 - conserved hypothetical protein, proteobacterial, at 605,652 to 606,371
_0552
Psest_0553: Psest_0553 - DnaK suppressor protein, at 606,676 to 606,942
_0553
Psest_0554: Psest_0554 - Signal transduction histidine kinase, at 606,943 to 608,124
_0554
Position (kb) 605
606
607 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.705 kb on + strand at 604.706 kb on - strand at 604.706 kb on - strand at 604.706 kb on - strand at 604.900 kb on + strand, within Psest_0551 at 604.900 kb on + strand, within Psest_0551 at 604.901 kb on - strand, within Psest_0551 at 604.901 kb on - strand, within Psest_0551 at 604.933 kb on + strand, within Psest_0551 at 605.339 kb on + strand, within Psest_0551 at 605.417 kb on + strand, within Psest_0551 at 605.417 kb on + strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.442 kb on - strand, within Psest_0551 at 605.442 kb on - strand, within Psest_0551 at 605.510 kb on + strand at 605.510 kb on + strand at 605.510 kb on + strand at 605.511 kb on - strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.550 kb on - strand at 605.550 kb on - strand at 605.550 kb on - strand at 605.567 kb on + strand at 605.568 kb on - strand at 605.698 kb on + strand at 605.755 kb on + strand, within Psest_0552 at 605.755 kb on + strand, within Psest_0552 at 605.755 kb on + strand, within Psest_0552 at 605.842 kb on + strand, within Psest_0552 at 605.842 kb on + strand, within Psest_0552 at 605.843 kb on - strand, within Psest_0552 at 605.843 kb on - strand, within Psest_0552 at 605.872 kb on + strand, within Psest_0552 at 605.872 kb on + strand, within Psest_0552 at 605.873 kb on - strand, within Psest_0552 at 605.925 kb on + strand, within Psest_0552 at 605.925 kb on + strand, within Psest_0552 at 605.925 kb on + strand, within Psest_0552 at 605.926 kb on - strand, within Psest_0552 at 605.926 kb on - strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.004 kb on + strand, within Psest_0552 at 606.005 kb on - strand, within Psest_0552 at 606.005 kb on - strand, within Psest_0552 at 606.005 kb on - strand, within Psest_0552 at 606.065 kb on - strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.107 kb on - strand, within Psest_0552 at 606.107 kb on - strand, within Psest_0552 at 606.107 kb on - strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.231 kb on + strand, within Psest_0552 at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.359 kb on - strand at 606.359 kb on - strand at 606.359 kb on - strand at 606.359 kb on - strand at 606.371 kb on + strand at 606.372 kb on - strand at 606.372 kb on - strand at 606.372 kb on - strand at 606.459 kb on + strand at 606.459 kb on + strand at 606.459 kb on + strand at 606.460 kb on - strand at 606.460 kb on - strand at 606.489 kb on - strand at 606.537 kb on - strand at 606.537 kb on - strand at 606.905 kb on - strand, within Psest_0553 at 607.011 kb on + strand at 607.097 kb on + strand, within Psest_0554 at 607.360 kb on + strand, within Psest_0554 at 607.360 kb on + strand, within Psest_0554 at 607.360 kb on + strand, within Psest_0554 at 607.361 kb on - strand, within Psest_0554
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml remove 604,703 + +1.0 604,703 + +1.0 604,703 + +2.5 604,703 + -0.5 604,703 + +1.1 604,703 + +0.3 604,703 + +0.7 604,703 + -0.7 604,703 + -2.9 604,703 + -0.3 604,703 + +0.6 604,703 + -0.8 604,703 + -0.4 604,703 + +0.2 604,704 - +0.7 604,704 - -0.3 604,704 - +1.0 604,704 - +0.4 604,704 - -1.7 604,704 - -0.1 604,704 - +1.2 604,704 - -1.7 604,705 + +1.3 604,706 - +0.2 604,706 - -0.4 604,706 - -1.6 604,900 + Psest_0551 0.22 -0.2 604,900 + Psest_0551 0.22 -0.6 604,901 - Psest_0551 0.23 -1.7 604,901 - Psest_0551 0.23 +1.3 604,933 + Psest_0551 0.26 +0.2 605,339 + Psest_0551 0.73 +0.3 605,417 + Psest_0551 0.82 -2.7 605,417 + Psest_0551 0.82 +1.5 605,418 - Psest_0551 0.82 +0.6 605,418 - Psest_0551 0.82 +0.9 605,418 - Psest_0551 0.82 +2.1 605,441 + Psest_0551 0.85 +0.7 605,441 + Psest_0551 0.85 +0.1 605,441 + Psest_0551 0.85 +1.0 605,441 + Psest_0551 0.85 +0.6 605,442 - Psest_0551 0.85 -1.6 605,442 - Psest_0551 0.85 -0.5 605,510 + -1.2 605,510 + -0.8 605,510 + +1.5 605,511 - -0.6 605,528 + -1.2 605,528 + +1.1 605,528 + +0.1 605,528 + +0.5 605,528 + -0.0 605,529 - +1.6 605,529 - +0.2 605,529 - -0.1 605,529 - +1.7 605,529 - -0.8 605,549 + -2.3 605,549 + +0.8 605,549 + +1.3 605,549 + -0.6 605,549 + +1.1 605,549 + -0.9 605,550 - -0.6 605,550 - +0.2 605,550 - +1.7 605,567 + +1.5 605,568 - +0.2 605,698 + +1.2 605,755 + Psest_0552 0.14 +1.2 605,755 + Psest_0552 0.14 +0.9 605,755 + Psest_0552 0.14 +0.4 605,842 + Psest_0552 0.26 +0.8 605,842 + Psest_0552 0.26 +0.7 605,843 - Psest_0552 0.27 +1.7 605,843 - Psest_0552 0.27 +2.0 605,872 + Psest_0552 0.31 -0.6 605,872 + Psest_0552 0.31 -1.2 605,873 - Psest_0552 0.31 -1.2 605,925 + Psest_0552 0.38 +1.0 605,925 + Psest_0552 0.38 -0.2 605,925 + Psest_0552 0.38 +0.2 605,926 - Psest_0552 0.38 -0.0 605,926 - Psest_0552 0.38 +2.6 606,001 + Psest_0552 0.48 +0.0 606,001 + Psest_0552 0.48 +0.3 606,001 + Psest_0552 0.48 -0.5 606,001 + Psest_0552 0.48 +1.0 606,001 + Psest_0552 0.48 -1.4 606,001 + Psest_0552 0.48 +0.7 606,001 + Psest_0552 0.48 +0.3 606,002 - Psest_0552 0.49 +0.0 606,002 - Psest_0552 0.49 -1.6 606,002 - Psest_0552 0.49 +0.9 606,002 - Psest_0552 0.49 -0.3 606,004 + Psest_0552 0.49 +0.5 606,005 - Psest_0552 0.49 +0.5 606,005 - Psest_0552 0.49 +0.9 606,005 - Psest_0552 0.49 -0.3 606,065 - Psest_0552 0.57 +1.0 606,106 + Psest_0552 0.63 +0.9 606,106 + Psest_0552 0.63 +1.3 606,106 + Psest_0552 0.63 +0.4 606,106 + Psest_0552 0.63 +0.7 606,107 - Psest_0552 0.63 +1.7 606,107 - Psest_0552 0.63 +0.7 606,107 - Psest_0552 0.63 +1.1 606,169 + Psest_0552 0.72 -1.2 606,169 + Psest_0552 0.72 -1.5 606,169 + Psest_0552 0.72 -0.8 606,169 + Psest_0552 0.72 +0.6 606,169 + Psest_0552 0.72 +0.2 606,169 + Psest_0552 0.72 -1.8 606,169 + Psest_0552 0.72 -2.2 606,170 - Psest_0552 0.72 -0.6 606,170 - Psest_0552 0.72 +0.6 606,170 - Psest_0552 0.72 +0.7 606,170 - Psest_0552 0.72 +1.9 606,170 - Psest_0552 0.72 +0.8 606,170 - Psest_0552 0.72 -1.7 606,170 - Psest_0552 0.72 -1.8 606,170 - Psest_0552 0.72 -1.2 606,170 - Psest_0552 0.72 +0.9 606,231 + Psest_0552 0.80 +0.8 606,358 + -1.4 606,358 + +1.7 606,358 + +4.1 606,358 + +0.8 606,358 + +0.5 606,358 + -0.3 606,359 - +0.7 606,359 - +0.5 606,359 - -0.3 606,359 - +0.9 606,371 + -1.3 606,372 - +0.8 606,372 - +1.5 606,372 - +0.9 606,459 + -1.3 606,459 + +0.6 606,459 + -0.1 606,460 - -0.7 606,460 - +0.6 606,489 - +0.4 606,537 - +0.4 606,537 - +0.6 606,905 - Psest_0553 0.86 -1.7 607,011 + -1.7 607,097 + Psest_0554 0.13 +2.2 607,360 + Psest_0554 0.35 -0.8 607,360 + Psest_0554 0.35 -4.6 607,360 + Psest_0554 0.35 +0.7 607,361 - Psest_0554 0.35 +1.1
Or see this region's nucleotide sequence