Experiment: Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0548 and Psest_0549 are separated by 163 nucleotides Psest_0549 and Psest_0550 are separated by 247 nucleotides Psest_0550 and Psest_0551 are separated by 100 nucleotides
Psest_0548: Psest_0548 - Urease accessory protein UreE, at 602,318 to 602,818
_0548
Psest_0549: Psest_0549 - Predicted acetyltransferase, at 602,982 to 603,485
_0549
Psest_0550: Psest_0550 - Predicted permease, DMT superfamily, at 603,733 to 604,605
_0550
Psest_0551: Psest_0551 - PEP phosphonomutase and related enzymes, at 604,706 to 605,569
_0551
Position (kb) 603
604
605 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 602.754 kb on + strand, within Psest_0548 at 602.754 kb on + strand, within Psest_0548 at 602.755 kb on - strand, within Psest_0548 at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.883 kb on - strand at 602.883 kb on - strand at 602.883 kb on - strand at 602.945 kb on + strand at 602.945 kb on + strand at 602.946 kb on - strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.025 kb on + strand at 603.026 kb on - strand at 603.164 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.419 kb on - strand, within Psest_0549 at 603.419 kb on - strand, within Psest_0549 at 603.453 kb on - strand at 603.481 kb on + strand at 603.482 kb on - strand at 603.482 kb on - strand at 603.482 kb on - strand at 603.544 kb on + strand at 603.757 kb on + strand at 603.758 kb on - strand at 603.774 kb on - strand at 603.866 kb on - strand, within Psest_0550 at 603.866 kb on - strand, within Psest_0550 at 603.866 kb on - strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.223 kb on - strand, within Psest_0550 at 604.266 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.456 kb on + strand, within Psest_0550 at 604.489 kb on + strand, within Psest_0550 at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.705 kb on + strand at 604.706 kb on - strand at 604.706 kb on - strand at 604.706 kb on - strand at 604.900 kb on + strand, within Psest_0551 at 604.900 kb on + strand, within Psest_0551 at 604.901 kb on - strand, within Psest_0551 at 604.901 kb on - strand, within Psest_0551 at 604.933 kb on + strand, within Psest_0551 at 605.339 kb on + strand, within Psest_0551 at 605.417 kb on + strand, within Psest_0551 at 605.417 kb on + strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.442 kb on - strand, within Psest_0551 at 605.442 kb on - strand, within Psest_0551 at 605.510 kb on + strand at 605.510 kb on + strand at 605.510 kb on + strand at 605.511 kb on - strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.550 kb on - strand at 605.550 kb on - strand at 605.550 kb on - strand at 605.567 kb on + strand at 605.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml remove 602,754 + Psest_0548 0.87 +1.2 602,754 + Psest_0548 0.87 +2.0 602,755 - Psest_0548 0.87 +0.5 602,880 + +0.3 602,880 + -3.0 602,880 + +0.3 602,880 + +0.7 602,880 + +1.3 602,880 + +2.2 602,880 + +0.0 602,880 + -0.5 602,880 + +0.5 602,881 - +0.9 602,881 - +0.9 602,881 - +0.7 602,881 - +0.5 602,881 - +0.5 602,881 - +1.2 602,881 - +0.0 602,881 - -0.4 602,881 - +2.3 602,883 - +0.1 602,883 - -0.6 602,883 - +0.5 602,945 + +0.8 602,945 + +0.8 602,946 - +2.0 603,007 + -1.3 603,007 + +1.5 603,007 + +1.0 603,007 + +1.2 603,007 + +1.3 603,007 + +1.5 603,007 + +1.0 603,007 + +1.4 603,007 + +2.1 603,007 + +1.3 603,007 + +0.6 603,007 + -0.4 603,007 + +1.7 603,007 + -0.7 603,025 + +1.3 603,026 - +0.1 603,164 + Psest_0549 0.36 -0.4 603,316 + Psest_0549 0.66 -1.5 603,316 + Psest_0549 0.66 -0.3 603,316 + Psest_0549 0.66 +3.5 603,316 + Psest_0549 0.66 +0.2 603,418 + Psest_0549 0.87 +0.3 603,418 + Psest_0549 0.87 -1.6 603,418 + Psest_0549 0.87 -2.4 603,418 + Psest_0549 0.87 -0.3 603,418 + Psest_0549 0.87 +0.3 603,419 - Psest_0549 0.87 +0.2 603,419 - Psest_0549 0.87 -0.6 603,453 - -0.2 603,481 + +0.7 603,482 - -0.6 603,482 - -0.8 603,482 - +0.4 603,544 + +0.6 603,757 + +0.4 603,758 - +0.4 603,774 - +0.9 603,866 - Psest_0550 0.15 -0.6 603,866 - Psest_0550 0.15 -0.1 603,866 - Psest_0550 0.15 +1.5 604,222 + Psest_0550 0.56 +0.9 604,222 + Psest_0550 0.56 +0.7 604,222 + Psest_0550 0.56 -0.8 604,223 - Psest_0550 0.56 +0.2 604,266 + Psest_0550 0.61 -0.3 604,276 + Psest_0550 0.62 +0.8 604,276 + Psest_0550 0.62 +1.1 604,276 + Psest_0550 0.62 +1.3 604,276 + Psest_0550 0.62 +1.1 604,276 + Psest_0550 0.62 +1.7 604,276 + Psest_0550 0.62 -0.8 604,276 + Psest_0550 0.62 +0.3 604,277 - Psest_0550 0.62 +1.4 604,277 - Psest_0550 0.62 +0.2 604,277 - Psest_0550 0.62 +2.7 604,277 - Psest_0550 0.62 -0.5 604,277 - Psest_0550 0.62 -1.0 604,277 - Psest_0550 0.62 +0.2 604,277 - Psest_0550 0.62 +1.5 604,277 - Psest_0550 0.62 -1.2 604,456 + Psest_0550 0.83 +0.3 604,489 + Psest_0550 0.87 +1.2 604,570 + -0.1 604,570 + +0.4 604,570 + -1.2 604,570 + +0.2 604,570 + +0.5 604,570 + +0.2 604,570 + -1.5 604,570 + +0.8 604,571 - +1.2 604,571 - +0.2 604,571 - +1.6 604,571 - -1.0 604,571 - -0.4 604,571 - +0.8 604,703 + +1.0 604,703 + +1.0 604,703 + +2.5 604,703 + -0.5 604,703 + +1.1 604,703 + +0.3 604,703 + +0.7 604,703 + -0.7 604,703 + -2.9 604,703 + -0.3 604,703 + +0.6 604,703 + -0.8 604,703 + -0.4 604,703 + +0.2 604,704 - +0.7 604,704 - -0.3 604,704 - +1.0 604,704 - +0.4 604,704 - -1.7 604,704 - -0.1 604,704 - +1.2 604,704 - -1.7 604,705 + +1.3 604,706 - +0.2 604,706 - -0.4 604,706 - -1.6 604,900 + Psest_0551 0.22 -0.2 604,900 + Psest_0551 0.22 -0.6 604,901 - Psest_0551 0.23 -1.7 604,901 - Psest_0551 0.23 +1.3 604,933 + Psest_0551 0.26 +0.2 605,339 + Psest_0551 0.73 +0.3 605,417 + Psest_0551 0.82 -2.7 605,417 + Psest_0551 0.82 +1.5 605,418 - Psest_0551 0.82 +0.6 605,418 - Psest_0551 0.82 +0.9 605,418 - Psest_0551 0.82 +2.1 605,441 + Psest_0551 0.85 +0.7 605,441 + Psest_0551 0.85 +0.1 605,441 + Psest_0551 0.85 +1.0 605,441 + Psest_0551 0.85 +0.6 605,442 - Psest_0551 0.85 -1.6 605,442 - Psest_0551 0.85 -0.5 605,510 + -1.2 605,510 + -0.8 605,510 + +1.5 605,511 - -0.6 605,528 + -1.2 605,528 + +1.1 605,528 + +0.1 605,528 + +0.5 605,528 + -0.0 605,529 - +1.6 605,529 - +0.2 605,529 - -0.1 605,529 - +1.7 605,529 - -0.8 605,549 + -2.3 605,549 + +0.8 605,549 + +1.3 605,549 + -0.6 605,549 + +1.1 605,549 + -0.9 605,550 - -0.6 605,550 - +0.2 605,550 - +1.7 605,567 + +1.5 605,568 - +0.2
Or see this region's nucleotide sequence