Experiment: Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0539 and Psest_0540 are separated by 20 nucleotides Psest_0540 and Psest_0541 are separated by 523 nucleotides
Psest_0539: Psest_0539 - Acyl-CoA dehydrogenases, at 593,128 to 594,774
_0539
Psest_0540: Psest_0540 - Ion transport protein., at 594,795 to 595,637
_0540
Psest_0541: Psest_0541 - succinate CoA transferases, at 596,161 to 597,672
_0541
Position (kb) 594
595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.901 kb on + strand, within Psest_0539 at 594.289 kb on + strand, within Psest_0539 at 594.289 kb on + strand, within Psest_0539 at 594.290 kb on - strand, within Psest_0539 at 594.290 kb on - strand, within Psest_0539 at 594.290 kb on - strand, within Psest_0539 at 594.290 kb on - strand, within Psest_0539 at 594.356 kb on - strand, within Psest_0539 at 594.356 kb on - strand, within Psest_0539 at 594.816 kb on + strand at 595.033 kb on + strand, within Psest_0540 at 595.034 kb on - strand, within Psest_0540 at 595.108 kb on + strand, within Psest_0540 at 595.109 kb on - strand, within Psest_0540 at 595.109 kb on - strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.187 kb on - strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.644 kb on + strand at 595.644 kb on + strand at 595.644 kb on + strand at 595.644 kb on + strand at 595.644 kb on + strand at 595.645 kb on - strand at 595.697 kb on + strand at 595.720 kb on - strand at 595.929 kb on - strand at 595.931 kb on + strand at 595.931 kb on + strand at 595.931 kb on + strand at 595.932 kb on - strand at 595.932 kb on - strand at 595.932 kb on - strand at 595.932 kb on - strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.941 kb on + strand at 595.941 kb on + strand at 595.966 kb on + strand at 595.966 kb on + strand at 595.966 kb on + strand at 595.966 kb on + strand at 595.967 kb on - strand at 595.967 kb on - strand at 595.984 kb on + strand at 595.985 kb on - strand at 596.029 kb on + strand at 596.174 kb on + strand at 596.174 kb on + strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.482 kb on + strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml remove 593,899 + Psest_0539 0.47 -0.7 593,899 + Psest_0539 0.47 -1.1 593,899 + Psest_0539 0.47 -0.2 593,899 + Psest_0539 0.47 -0.6 593,899 + Psest_0539 0.47 +0.7 593,899 + Psest_0539 0.47 -0.2 593,899 + Psest_0539 0.47 +1.9 593,899 + Psest_0539 0.47 -0.3 593,899 + Psest_0539 0.47 -1.7 593,899 + Psest_0539 0.47 -1.8 593,899 + Psest_0539 0.47 -0.3 593,899 + Psest_0539 0.47 +0.1 593,899 + Psest_0539 0.47 +0.9 593,899 + Psest_0539 0.47 -1.1 593,899 + Psest_0539 0.47 -0.2 593,899 + Psest_0539 0.47 -0.8 593,899 + Psest_0539 0.47 +0.2 593,899 + Psest_0539 0.47 -0.4 593,900 - Psest_0539 0.47 +1.1 593,900 - Psest_0539 0.47 +1.9 593,900 - Psest_0539 0.47 +2.7 593,900 - Psest_0539 0.47 +0.1 593,900 - Psest_0539 0.47 +0.4 593,900 - Psest_0539 0.47 +0.5 593,900 - Psest_0539 0.47 +1.4 593,900 - Psest_0539 0.47 +1.6 593,901 + Psest_0539 0.47 +0.1 594,289 + Psest_0539 0.70 +0.9 594,289 + Psest_0539 0.70 -1.2 594,290 - Psest_0539 0.71 +0.7 594,290 - Psest_0539 0.71 +1.1 594,290 - Psest_0539 0.71 +1.3 594,290 - Psest_0539 0.71 +0.1 594,356 - Psest_0539 0.75 +1.1 594,356 - Psest_0539 0.75 -0.4 594,816 + +1.1 595,033 + Psest_0540 0.28 -0.3 595,034 - Psest_0540 0.28 +0.5 595,108 + Psest_0540 0.37 -1.5 595,109 - Psest_0540 0.37 +1.2 595,109 - Psest_0540 0.37 -3.5 595,186 + Psest_0540 0.46 -0.7 595,186 + Psest_0540 0.46 +0.1 595,186 + Psest_0540 0.46 -0.3 595,186 + Psest_0540 0.46 -0.5 595,186 + Psest_0540 0.46 -0.1 595,186 + Psest_0540 0.46 -0.1 595,186 + Psest_0540 0.46 +3.3 595,187 - Psest_0540 0.47 +0.5 595,417 + Psest_0540 0.74 -1.5 595,417 + Psest_0540 0.74 -1.6 595,417 + Psest_0540 0.74 +0.1 595,417 + Psest_0540 0.74 -0.3 595,417 + Psest_0540 0.74 -0.6 595,417 + Psest_0540 0.74 -1.6 595,418 - Psest_0540 0.74 +2.6 595,418 - Psest_0540 0.74 +1.1 595,418 - Psest_0540 0.74 +1.1 595,418 - Psest_0540 0.74 +1.0 595,418 - Psest_0540 0.74 -0.3 595,418 - Psest_0540 0.74 +0.1 595,418 - Psest_0540 0.74 +1.0 595,418 - Psest_0540 0.74 +0.1 595,418 - Psest_0540 0.74 +0.9 595,418 - Psest_0540 0.74 +1.6 595,418 - Psest_0540 0.74 +1.9 595,644 + -1.6 595,644 + +0.7 595,644 + +0.3 595,644 + -0.6 595,644 + +0.7 595,645 - +1.6 595,697 + -0.1 595,720 - -0.6 595,929 - +0.1 595,931 + -2.0 595,931 + +3.3 595,931 + +3.3 595,932 - -0.1 595,932 - -0.0 595,932 - +0.5 595,932 - -0.3 595,939 + -0.3 595,939 + +1.3 595,939 + -0.2 595,939 + -0.6 595,939 + -0.6 595,939 + -0.9 595,939 + +1.0 595,939 + -0.3 595,939 + -2.0 595,940 - +1.7 595,940 - -0.5 595,940 - -0.0 595,940 - +1.0 595,940 - +1.4 595,940 - +0.5 595,940 - +1.5 595,940 - +0.6 595,940 - -1.3 595,940 - +0.3 595,940 - -0.3 595,940 - +0.3 595,940 - -2.2 595,941 + -0.6 595,941 + -0.3 595,966 + -0.7 595,966 + -0.6 595,966 + -1.3 595,966 + +1.0 595,967 - +0.6 595,967 - +1.6 595,984 + -0.5 595,985 - -0.1 596,029 + -1.6 596,174 + +1.1 596,174 + +0.5 596,175 - -0.9 596,175 - -0.9 596,175 - +1.1 596,175 - +1.1 596,175 - -1.5 596,182 + +0.7 596,182 + -0.6 596,182 + -0.3 596,182 + +1.3 596,182 + -0.2 596,182 + -0.3 596,182 + +0.1 596,182 + -0.3 596,182 + -0.4 596,182 + -0.5 596,182 + -0.6 596,183 - -1.2 596,183 - +0.1 596,183 - -1.1 596,183 - +0.1 596,183 - -0.2 596,183 - -0.9 596,183 - -0.6 596,183 - -0.5 596,183 - -0.2 596,482 + Psest_0541 0.21 +0.7 596,483 - Psest_0541 0.21 -0.6 596,483 - Psest_0541 0.21 +0.6 596,483 - Psest_0541 0.21 +1.0 596,483 - Psest_0541 0.21 +0.1 596,483 - Psest_0541 0.21 +0.2 596,483 - Psest_0541 0.21 -0.0 596,483 - Psest_0541 0.21 +0.1 596,483 - Psest_0541 0.21 +0.0
Or see this region's nucleotide sequence