Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05070 and PGA1_c05080 overlap by 1 nucleotides PGA1_c05080 and PGA1_c05090 are separated by 425 nucleotides
PGA1_c05070: PGA1_c05070 - putative pyridoxal-phosphate-dependent aminotransferase, at 499,811 to 500,908
_c05070
PGA1_c05080: PGA1_c05080 - WxcM-like, C-terminal., at 500,908 to 501,342
_c05080
PGA1_c05090: PGA1_c05090 - putative glycosyl transferase, at 501,768 to 502,712
_c05090
Position (kb) 500
501
502 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 499.972 kb on + strand, within PGA1_c05070 at 499.977 kb on + strand, within PGA1_c05070 at 499.977 kb on + strand, within PGA1_c05070 at 499.982 kb on + strand, within PGA1_c05070 at 499.985 kb on - strand, within PGA1_c05070 at 500.040 kb on + strand, within PGA1_c05070 at 500.104 kb on + strand, within PGA1_c05070 at 500.114 kb on + strand, within PGA1_c05070 at 500.176 kb on - strand, within PGA1_c05070 at 500.211 kb on + strand, within PGA1_c05070 at 500.225 kb on + strand, within PGA1_c05070 at 500.225 kb on + strand, within PGA1_c05070 at 500.293 kb on + strand, within PGA1_c05070 at 500.293 kb on + strand, within PGA1_c05070 at 500.359 kb on + strand, within PGA1_c05070 at 500.367 kb on - strand, within PGA1_c05070 at 500.449 kb on + strand, within PGA1_c05070 at 500.449 kb on + strand, within PGA1_c05070 at 500.457 kb on - strand, within PGA1_c05070 at 500.520 kb on + strand, within PGA1_c05070 at 500.543 kb on + strand, within PGA1_c05070 at 500.589 kb on + strand, within PGA1_c05070 at 500.611 kb on + strand, within PGA1_c05070 at 500.622 kb on + strand, within PGA1_c05070 at 500.631 kb on + strand, within PGA1_c05070 at 500.640 kb on - strand, within PGA1_c05070 at 500.684 kb on - strand, within PGA1_c05070 at 500.713 kb on + strand, within PGA1_c05070 at 500.740 kb on + strand, within PGA1_c05070 at 500.748 kb on - strand, within PGA1_c05070 at 500.748 kb on - strand, within PGA1_c05070 at 500.750 kb on + strand, within PGA1_c05070 at 500.787 kb on + strand, within PGA1_c05070 at 500.797 kb on + strand, within PGA1_c05070 at 500.797 kb on + strand, within PGA1_c05070 at 500.797 kb on + strand, within PGA1_c05070 at 500.805 kb on - strand at 500.813 kb on + strand at 500.831 kb on - strand at 500.831 kb on - strand at 500.834 kb on + strand at 500.880 kb on + strand at 500.888 kb on - strand at 500.910 kb on + strand at 500.958 kb on - strand, within PGA1_c05080 at 500.958 kb on - strand, within PGA1_c05080 at 500.973 kb on - strand, within PGA1_c05080 at 500.980 kb on + strand, within PGA1_c05080 at 500.981 kb on + strand, within PGA1_c05080 at 500.989 kb on + strand, within PGA1_c05080 at 500.995 kb on - strand, within PGA1_c05080 at 501.095 kb on + strand, within PGA1_c05080 at 501.100 kb on + strand, within PGA1_c05080 at 501.100 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.127 kb on - strand, within PGA1_c05080 at 501.145 kb on + strand, within PGA1_c05080 at 501.152 kb on + strand, within PGA1_c05080 at 501.152 kb on - strand, within PGA1_c05080 at 501.152 kb on - strand, within PGA1_c05080 at 501.153 kb on - strand, within PGA1_c05080 at 501.160 kb on - strand, within PGA1_c05080 at 501.162 kb on - strand, within PGA1_c05080 at 501.179 kb on + strand, within PGA1_c05080 at 501.203 kb on + strand, within PGA1_c05080 at 501.232 kb on - strand, within PGA1_c05080 at 501.259 kb on - strand, within PGA1_c05080 at 501.318 kb on + strand at 501.360 kb on - strand at 501.370 kb on - strand at 501.370 kb on - strand at 501.386 kb on + strand at 501.386 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.391 kb on - strand at 501.394 kb on - strand at 501.395 kb on + strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.405 kb on + strand at 501.413 kb on - strand at 501.418 kb on - strand at 501.439 kb on - strand at 501.466 kb on + strand at 501.476 kb on - strand at 501.486 kb on - strand at 501.494 kb on - strand at 501.496 kb on + strand at 501.496 kb on + strand at 501.496 kb on + strand at 501.496 kb on + strand at 501.496 kb on + strand at 501.504 kb on - strand at 501.522 kb on + strand at 501.522 kb on + strand at 501.552 kb on + strand at 501.552 kb on + strand at 501.552 kb on + strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.567 kb on - strand at 501.604 kb on + strand at 501.629 kb on - strand at 501.630 kb on + strand at 501.641 kb on - strand at 501.646 kb on + strand at 501.647 kb on - strand at 501.654 kb on - strand at 501.662 kb on + strand at 501.670 kb on - strand at 501.670 kb on - strand at 501.699 kb on + strand at 501.699 kb on - strand at 501.747 kb on + strand at 501.760 kb on - strand at 501.792 kb on - strand at 501.792 kb on - strand at 501.802 kb on + strand at 501.810 kb on + strand at 501.810 kb on + strand at 501.810 kb on + strand at 501.810 kb on - strand at 501.810 kb on - strand at 501.818 kb on - strand at 501.818 kb on - strand at 501.828 kb on - strand at 501.892 kb on + strand, within PGA1_c05090 at 501.899 kb on + strand, within PGA1_c05090 at 501.938 kb on + strand, within PGA1_c05090 at 501.945 kb on + strand, within PGA1_c05090 at 501.945 kb on + strand, within PGA1_c05090 at 501.945 kb on + strand, within PGA1_c05090 at 501.953 kb on - strand, within PGA1_c05090 at 501.963 kb on - strand, within PGA1_c05090 at 502.012 kb on + strand, within PGA1_c05090 at 502.064 kb on - strand, within PGA1_c05090 at 502.066 kb on - strand, within PGA1_c05090 at 502.068 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.098 kb on - strand, within PGA1_c05090 at 502.098 kb on - strand, within PGA1_c05090 at 502.127 kb on - strand, within PGA1_c05090 at 502.285 kb on + strand, within PGA1_c05090 at 502.285 kb on + strand, within PGA1_c05090 at 502.286 kb on + strand, within PGA1_c05090 at 502.291 kb on + strand, within PGA1_c05090 at 502.294 kb on - strand, within PGA1_c05090 at 502.294 kb on - strand, within PGA1_c05090 at 502.294 kb on - strand, within PGA1_c05090
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 499,972 + PGA1_c05070 0.15 -3.4 499,977 + PGA1_c05070 0.15 -2.2 499,977 + PGA1_c05070 0.15 -1.0 499,982 + PGA1_c05070 0.16 +0.1 499,985 - PGA1_c05070 0.16 -3.0 500,040 + PGA1_c05070 0.21 -1.3 500,104 + PGA1_c05070 0.27 -0.3 500,114 + PGA1_c05070 0.28 -0.6 500,176 - PGA1_c05070 0.33 -0.2 500,211 + PGA1_c05070 0.36 -0.3 500,225 + PGA1_c05070 0.38 -1.3 500,225 + PGA1_c05070 0.38 +1.2 500,293 + PGA1_c05070 0.44 +0.6 500,293 + PGA1_c05070 0.44 -0.2 500,359 + PGA1_c05070 0.50 -1.5 500,367 - PGA1_c05070 0.51 -0.3 500,449 + PGA1_c05070 0.58 -0.9 500,449 + PGA1_c05070 0.58 -1.2 500,457 - PGA1_c05070 0.59 -1.2 500,520 + PGA1_c05070 0.65 -0.1 500,543 + PGA1_c05070 0.67 -1.0 500,589 + PGA1_c05070 0.71 -1.5 500,611 + PGA1_c05070 0.73 +1.2 500,622 + PGA1_c05070 0.74 -2.7 500,631 + PGA1_c05070 0.75 -0.6 500,640 - PGA1_c05070 0.76 +0.3 500,684 - PGA1_c05070 0.80 -0.4 500,713 + PGA1_c05070 0.82 -2.0 500,740 + PGA1_c05070 0.85 -0.8 500,748 - PGA1_c05070 0.85 -1.2 500,748 - PGA1_c05070 0.85 -0.7 500,750 + PGA1_c05070 0.86 -1.3 500,787 + PGA1_c05070 0.89 +1.9 500,797 + PGA1_c05070 0.90 -0.8 500,797 + PGA1_c05070 0.90 -2.5 500,797 + PGA1_c05070 0.90 -0.0 500,805 - +0.8 500,813 + +1.0 500,831 - +1.3 500,831 - -0.2 500,834 + +0.2 500,880 + +0.0 500,888 - -1.0 500,910 + -0.2 500,958 - PGA1_c05080 0.11 +0.2 500,958 - PGA1_c05080 0.11 +0.4 500,973 - PGA1_c05080 0.15 -2.5 500,980 + PGA1_c05080 0.17 -0.2 500,981 + PGA1_c05080 0.17 -0.1 500,989 + PGA1_c05080 0.19 -4.0 500,995 - PGA1_c05080 0.20 -1.7 501,095 + PGA1_c05080 0.43 -0.7 501,100 + PGA1_c05080 0.44 +1.2 501,100 + PGA1_c05080 0.44 -2.1 501,111 + PGA1_c05080 0.47 +1.1 501,111 + PGA1_c05080 0.47 -1.5 501,111 + PGA1_c05080 0.47 -3.1 501,111 + PGA1_c05080 0.47 -1.3 501,111 + PGA1_c05080 0.47 -0.4 501,111 + PGA1_c05080 0.47 +0.9 501,111 + PGA1_c05080 0.47 -1.0 501,111 + PGA1_c05080 0.47 -2.0 501,119 - PGA1_c05080 0.49 -0.3 501,119 - PGA1_c05080 0.49 -0.8 501,119 - PGA1_c05080 0.49 +0.5 501,119 - PGA1_c05080 0.49 -1.7 501,119 - PGA1_c05080 0.49 -2.1 501,119 - PGA1_c05080 0.49 -0.1 501,119 - PGA1_c05080 0.49 -0.0 501,127 - PGA1_c05080 0.50 +0.2 501,145 + PGA1_c05080 0.54 -1.4 501,152 + PGA1_c05080 0.56 -0.3 501,152 - PGA1_c05080 0.56 +0.0 501,152 - PGA1_c05080 0.56 -1.2 501,153 - PGA1_c05080 0.56 -0.0 501,160 - PGA1_c05080 0.58 +2.1 501,162 - PGA1_c05080 0.58 -0.7 501,179 + PGA1_c05080 0.62 +0.0 501,203 + PGA1_c05080 0.68 +0.4 501,232 - PGA1_c05080 0.74 +0.3 501,259 - PGA1_c05080 0.81 -2.7 501,318 + +0.1 501,360 - +4.3 501,370 - -1.5 501,370 - +0.2 501,386 + -0.8 501,386 + -0.9 501,388 + -2.8 501,388 + +1.5 501,388 + -1.5 501,388 + -0.6 501,388 + -0.3 501,388 + -2.2 501,388 + -2.5 501,388 + +0.6 501,388 + -0.9 501,388 + -0.2 501,391 - +0.0 501,394 - -0.9 501,395 + -1.0 501,396 - -0.1 501,396 - -0.0 501,396 - +0.2 501,396 - +0.5 501,396 - -0.2 501,396 - +0.3 501,396 - -1.3 501,396 - -0.1 501,405 + +0.6 501,413 - -1.4 501,418 - +0.6 501,439 - +0.3 501,466 + +0.2 501,476 - +1.1 501,486 - -0.2 501,494 - -0.7 501,496 + +0.0 501,496 + -0.2 501,496 + +0.7 501,496 + -1.0 501,496 + +0.1 501,504 - -0.8 501,522 + +1.3 501,522 + -0.6 501,552 + -0.8 501,552 + -0.8 501,552 + -0.4 501,560 - +0.5 501,560 - +0.1 501,560 - -0.2 501,560 - +1.9 501,560 - -0.9 501,560 - -0.7 501,560 - -1.2 501,560 - +0.7 501,567 - +0.7 501,604 + -0.4 501,629 - +0.5 501,630 + -2.5 501,641 - +0.9 501,646 + +0.7 501,647 - +1.2 501,654 - -0.0 501,662 + +0.4 501,670 - -0.6 501,670 - +0.9 501,699 + -0.1 501,699 - -1.5 501,747 + -0.4 501,760 - -0.3 501,792 - -2.2 501,792 - +0.8 501,802 + +0.7 501,810 + -1.4 501,810 + +1.2 501,810 + -0.3 501,810 - -1.2 501,810 - -2.2 501,818 - +0.4 501,818 - -2.1 501,828 - -1.8 501,892 + PGA1_c05090 0.13 +0.2 501,899 + PGA1_c05090 0.14 -2.3 501,938 + PGA1_c05090 0.18 -1.0 501,945 + PGA1_c05090 0.19 -0.1 501,945 + PGA1_c05090 0.19 +0.3 501,945 + PGA1_c05090 0.19 -2.6 501,953 - PGA1_c05090 0.20 -2.2 501,963 - PGA1_c05090 0.21 +2.2 502,012 + PGA1_c05090 0.26 -1.4 502,064 - PGA1_c05090 0.31 +0.3 502,066 - PGA1_c05090 0.32 -1.3 502,068 + PGA1_c05090 0.32 -0.8 502,090 + PGA1_c05090 0.34 +0.3 502,090 + PGA1_c05090 0.34 -1.0 502,090 + PGA1_c05090 0.34 -0.1 502,090 + PGA1_c05090 0.34 -2.9 502,090 + PGA1_c05090 0.34 -2.5 502,098 - PGA1_c05090 0.35 -1.0 502,098 - PGA1_c05090 0.35 -0.8 502,127 - PGA1_c05090 0.38 -0.3 502,285 + PGA1_c05090 0.55 +0.2 502,285 + PGA1_c05090 0.55 +1.2 502,286 + PGA1_c05090 0.55 -0.8 502,291 + PGA1_c05090 0.55 -1.0 502,294 - PGA1_c05090 0.56 +0.4 502,294 - PGA1_c05090 0.56 -0.4 502,294 - PGA1_c05090 0.56 -0.6
Or see this region's nucleotide sequence