Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0047

Experiment: Cephalothin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.04 mg/ml
48,335	-		Psest_0045	0.89	-0.2
48,341	-				+0.4
48,341	-				+0.4
48,354	-				-0.8
48,451	-				-0.2
48,473	-				+0.2
48,480	+				+0.0
48,480	+				-3.5
48,481	-				-0.6
48,494	+				-0.6
48,494	+				-0.5
48,494	+				-1.0
48,494	+				+0.7
48,494	+				+1.0
48,494	+				-0.4
48,495	-				-0.8
48,495	-				-1.2
48,495	-				-1.8
48,495	-				+0.3
48,495	-				+0.6
48,495	-				-1.0
48,495	-				+0.0
48,495	-				+0.8
48,500	+				-1.4
48,500	+				-0.0
48,500	+				-1.0
48,501	-				+1.4
48,512	-				-1.0
48,533	-				-0.3
48,582	-				-0.2
48,735	+		Psest_0046	0.39	+0.4
48,736	-		Psest_0046	0.39	-1.0
48,736	-		Psest_0046	0.39	+1.6
48,795	-		Psest_0046	0.52	-2.5
48,864	+		Psest_0046	0.67	+0.8
48,865	-		Psest_0046	0.68	-2.0
48,894	+		Psest_0046	0.74	+0.1
48,894	+		Psest_0046	0.74	+0.3
48,894	+		Psest_0046	0.74	-0.5
48,894	+		Psest_0046	0.74	+0.2
48,894	+		Psest_0046	0.74	+0.8
48,894	+		Psest_0046	0.74	-1.2
48,894	+		Psest_0046	0.74	+0.4
48,895	-		Psest_0046	0.74	-0.6
48,895	-		Psest_0046	0.74	+3.4
48,895	-		Psest_0046	0.74	+1.4
48,895	-		Psest_0046	0.74	-0.8
48,895	-		Psest_0046	0.74	+3.2
48,895	-		Psest_0046	0.74	-0.7
48,895	-		Psest_0046	0.74	-0.5
48,915	+		Psest_0046	0.78	+1.5
48,960	+		Psest_0046	0.88	+1.0
48,960	+		Psest_0046	0.88	+1.4
48,960	+		Psest_0046	0.88	+1.9
48,961	-		Psest_0046	0.88	-0.9
48,971	+				+1.7
48,971	+				+0.3
48,971	+				-0.2
48,971	+				+0.3
48,971	+				-2.5
48,971	+				+0.6
48,971	+				+0.9
48,972	-				-2.1
48,972	-				-1.4
48,972	-				-0.8
48,981	+				-0.0
48,982	-				-1.3
48,982	-				-1.0
48,982	-				-0.8
49,080	+				+1.3
49,080	+				+1.6
49,229	-				-0.1
49,229	-				-1.0
49,246	+				+1.1
49,247	-				-1.8
49,247	-				-0.7
49,285	+				+0.9
49,286	-				+1.1
49,293	+				+0.9
49,293	+				+1.4
49,294	-				+1.7
49,294	-				+1.2
49,411	-				+1.1
49,458	+		Psest_0047	0.13	+0.9
49,459	-		Psest_0047	0.13	-0.9
49,459	-		Psest_0047	0.13	-0.7
49,459	-		Psest_0047	0.13	+0.8
49,893	+		Psest_0047	0.49	+1.1
49,958	+		Psest_0047	0.54	+0.4
49,958	+		Psest_0047	0.54	+0.0
50,028	+		Psest_0047	0.60	+0.4
50,028	+		Psest_0047	0.60	+1.1
50,028	+		Psest_0047	0.60	+1.9
50,029	-		Psest_0047	0.60	-0.5
50,029	-		Psest_0047	0.60	-0.9
50,029	-		Psest_0047	0.60	+0.4
50,029	-		Psest_0047	0.60	-2.1
50,505	-				-0.2
50,541	+				-1.4
50,541	+				-0.9
50,541	+				+0.0
50,627	-				+0.4
50,627	-				-0.4
50,639	+				-0.9
50,639	+				-2.2
50,639	+				-3.5
50,640	-				-0.6
50,732	-				-1.4
50,855	-				+0.5
50,887	-				-0.5
51,013	+				-1.4
51,013	+				-0.6
51,013	+				-0.7
51,013	+				+0.0
51,013	+				+1.6
51,014	-				-0.9
51,014	-				+1.4
51,022	+				+1.4
51,022	+				-2.0
51,023	-				-0.6
51,023	-				-1.3
51,304	+		Psest_0048	0.20	-1.1
51,304	+		Psest_0048	0.20	-0.2
51,305	-		Psest_0048	0.20	+0.1
51,439	+		Psest_0048	0.28	+1.6
51,439	+		Psest_0048	0.28	+0.6
51,439	+		Psest_0048	0.28	+1.2
51,440	-		Psest_0048	0.28	-0.5
51,440	-		Psest_0048	0.28	+0.0
51,457	+		Psest_0048	0.29	-0.7
51,457	+		Psest_0048	0.29	+1.0
51,457	+		Psest_0048	0.29	+0.4
51,457	+		Psest_0048	0.29	-0.4
51,458	-		Psest_0048	0.29	-1.4
51,458	-		Psest_0048	0.29	-0.1
51,458	-		Psest_0048	0.29	-0.1
51,458	-		Psest_0048	0.29	-0.4
51,458	-		Psest_0048	0.29	-0.4
51,517	+		Psest_0048	0.32	+0.4