Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04750 and PGA1_c04760 are separated by 5 nucleotides PGA1_c04760 and PGA1_c04770 overlap by 4 nucleotides PGA1_c04770 and PGA1_c04780 are separated by 116 nucleotides
PGA1_c04750: PGA1_c04750 - metalloprotein, YbeY/UPF0054 family, at 466,759 to 467,289
_c04750
PGA1_c04760: PGA1_c04760 - magnesium and cobalt efflux protein corC-like protein, at 467,295 to 468,194
_c04760
PGA1_c04770: PGA1_c04770 - apolipoprotein N-acyltransferase Int, at 468,191 to 469,702
_c04770
PGA1_c04780: PGA1_c04780 - S-adenosylmethionine synthetase MetK, at 469,819 to 471,000
_c04780
Position (kb) 468
469
470 Strain fitness (log2 ratio) -2
-1
0
1 at 467.244 kb on + strand at 467.260 kb on - strand at 467.350 kb on - strand at 467.368 kb on - strand at 468.192 kb on - strand at 469.685 kb on - strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.703 kb on - strand at 469.703 kb on - strand at 469.711 kb on + strand at 469.744 kb on + strand at 469.795 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 467,244 + -1.4 467,260 - +0.2 467,350 - -0.8 467,368 - +0.1 468,192 - -2.4 469,685 - +0.7 469,695 + +0.5 469,695 + +0.9 469,695 + +0.6 469,695 + +0.6 469,695 + -2.6 469,695 + -1.3 469,695 + -0.9 469,695 + +0.7 469,695 + -0.5 469,695 + -2.3 469,695 + -0.9 469,695 + +1.4 469,695 + +0.7 469,695 + -0.4 469,703 - -0.2 469,703 - +1.3 469,711 + +0.9 469,744 + +1.1 469,795 + -2.1
Or see this region's nucleotide sequence