Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0443

Experiment: Cephalothin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0442 and Psest_0443 are separated by 432 nucleotidesPsest_0443 and Psest_0444 are separated by 127 nucleotidesPsest_0444 and Psest_0445 are separated by 111 nucleotides Psest_0442: Psest_0442 - ATPases of the AAA+ class, at 482,192 to 483,178 _0442 Psest_0443: Psest_0443 - methionine-S-sulfoxide reductase, at 483,611 to 484,156 _0443 Psest_0444: Psest_0444 - methionine-S-sulfoxide reductase, at 484,284 to 484,706 _0444 Psest_0445: Psest_0445 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 484,818 to 487,490 _0445 Position (kb) 483 484 485Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 482.753 kb on + strand, within Psest_0442at 482.753 kb on + strand, within Psest_0442at 482.821 kb on + strand, within Psest_0442at 482.864 kb on + strand, within Psest_0442at 482.873 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.979 kb on + strand, within Psest_0442at 482.979 kb on + strand, within Psest_0442at 482.998 kb on + strand, within Psest_0442at 482.998 kb on + strand, within Psest_0442at 483.001 kb on + strand, within Psest_0442at 483.001 kb on + strand, within Psest_0442at 483.091 kb on + strandat 483.215 kb on + strandat 483.215 kb on + strandat 483.402 kb on - strandat 483.506 kb on + strandat 483.528 kb on + strandat 483.529 kb on - strandat 483.694 kb on + strand, within Psest_0443at 483.764 kb on + strand, within Psest_0443at 483.816 kb on - strand, within Psest_0443at 483.837 kb on - strand, within Psest_0443at 483.906 kb on - strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.020 kb on - strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.022 kb on - strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.030 kb on - strand, within Psest_0443at 484.059 kb on + strand, within Psest_0443at 484.136 kb on + strandat 484.169 kb on - strandat 484.169 kb on - strandat 484.231 kb on + strandat 484.231 kb on + strandat 484.232 kb on - strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.252 kb on - strandat 484.252 kb on - strandat 484.252 kb on - strandat 484.255 kb on + strandat 484.255 kb on + strandat 484.255 kb on + strandat 484.255 kb on + strandat 484.255 kb on + strandat 484.255 kb on + strandat 484.285 kb on + strandat 484.285 kb on + strandat 484.290 kb on + strandat 484.290 kb on + strandat 484.291 kb on - strandat 484.296 kb on + strandat 484.296 kb on + strandat 484.296 kb on + strandat 484.314 kb on + strandat 484.390 kb on - strand, within Psest_0444at 484.441 kb on + strand, within Psest_0444at 484.442 kb on - strand, within Psest_0444at 484.471 kb on + strand, within Psest_0444at 484.548 kb on + strand, within Psest_0444at 484.549 kb on - strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.604 kb on - strand, within Psest_0444at 484.604 kb on - strand, within Psest_0444at 484.618 kb on - strand, within Psest_0444at 484.624 kb on - strand, within Psest_0444at 484.738 kb on + strandat 484.738 kb on + strandat 484.739 kb on - strandat 484.739 kb on - strandat 484.739 kb on - strandat 484.743 kb on + strandat 484.744 kb on - strandat 484.760 kb on + strandat 484.761 kb on - strandat 484.761 kb on - strandat 484.888 kb on + strandat 484.888 kb on + strandat 484.889 kb on - strandat 485.036 kb on + strandat 485.093 kb on - strand, within Psest_0445

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml
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482,753 + Psest_0442 0.57 -1.2
482,753 + Psest_0442 0.57 -1.4
482,821 + Psest_0442 0.64 -1.1
482,864 + Psest_0442 0.68 -2.9
482,873 + Psest_0442 0.69 -2.3
482,923 + Psest_0442 0.74 -1.1
482,923 + Psest_0442 0.74 -0.9
482,923 + Psest_0442 0.74 -2.7
482,923 + Psest_0442 0.74 -0.6
482,933 + Psest_0442 0.75 -2.8
482,933 + Psest_0442 0.75 -1.5
482,933 + Psest_0442 0.75 -3.1
482,933 + Psest_0442 0.75 -2.6
482,933 + Psest_0442 0.75 -1.6
482,979 + Psest_0442 0.80 -3.0
482,979 + Psest_0442 0.80 -2.0
482,998 + Psest_0442 0.82 +2.4
482,998 + Psest_0442 0.82 +1.2
483,001 + Psest_0442 0.82 -1.8
483,001 + Psest_0442 0.82 -2.0
483,091 + +2.5
483,215 + -0.7
483,215 + -0.8
483,402 - -1.3
483,506 + -2.1
483,528 + -2.6
483,529 - -2.0
483,694 + Psest_0443 0.15 -2.9
483,764 + Psest_0443 0.28 -3.0
483,816 - Psest_0443 0.38 -0.3
483,837 - Psest_0443 0.41 +0.4
483,906 - Psest_0443 0.54 -1.6
484,019 + Psest_0443 0.75 -1.0
484,019 + Psest_0443 0.75 -0.5
484,019 + Psest_0443 0.75 -3.0
484,019 + Psest_0443 0.75 +0.4
484,019 + Psest_0443 0.75 -0.8
484,019 + Psest_0443 0.75 -2.3
484,019 + Psest_0443 0.75 -0.6
484,019 + Psest_0443 0.75 -0.4
484,020 - Psest_0443 0.75 -0.4
484,021 + Psest_0443 0.75 -1.8
484,021 + Psest_0443 0.75 -1.4
484,021 + Psest_0443 0.75 -3.9
484,021 + Psest_0443 0.75 -1.4
484,022 - Psest_0443 0.75 -0.3
484,029 + Psest_0443 0.77 -1.5
484,029 + Psest_0443 0.77 -2.8
484,029 + Psest_0443 0.77 -2.7
484,029 + Psest_0443 0.77 -1.9
484,029 + Psest_0443 0.77 -0.9
484,029 + Psest_0443 0.77 -1.5
484,029 + Psest_0443 0.77 +0.2
484,029 + Psest_0443 0.77 -0.9
484,029 + Psest_0443 0.77 -2.8
484,030 - Psest_0443 0.77 -1.0
484,059 + Psest_0443 0.82 -1.1
484,136 + +0.3
484,169 - -0.3
484,169 - +0.1
484,231 + -0.5
484,231 + +0.5
484,232 - -0.7
484,251 + +1.3
484,251 + -0.1
484,251 + -0.4
484,251 + +0.0
484,251 + -1.7
484,251 + -1.5
484,251 + -0.3
484,251 + -0.1
484,251 + +0.2
484,252 - -1.0
484,252 - -0.5
484,252 - -0.3
484,255 + -1.7
484,255 + +0.5
484,255 + -1.3
484,255 + +0.1
484,255 + +0.3
484,255 + -0.1
484,285 + +0.2
484,285 + +1.1
484,290 + -0.1
484,290 + -0.9
484,291 - -1.2
484,296 + -0.8
484,296 + -0.7
484,296 + -0.3
484,314 + +1.4
484,390 - Psest_0444 0.25 -0.7
484,441 + Psest_0444 0.37 -1.2
484,442 - Psest_0444 0.37 +0.2
484,471 + Psest_0444 0.44 -0.2
484,548 + Psest_0444 0.62 +0.1
484,549 - Psest_0444 0.63 +2.1
484,603 + Psest_0444 0.75 +1.3
484,603 + Psest_0444 0.75 +0.2
484,603 + Psest_0444 0.75 +1.8
484,603 + Psest_0444 0.75 +1.2
484,603 + Psest_0444 0.75 +0.7
484,603 + Psest_0444 0.75 +1.5
484,603 + Psest_0444 0.75 +0.0
484,604 - Psest_0444 0.76 -1.6
484,604 - Psest_0444 0.76 +1.6
484,618 - Psest_0444 0.79 -0.3
484,624 - Psest_0444 0.80 +0.5
484,738 + +1.0
484,738 + +0.5
484,739 - -0.3
484,739 - +0.0
484,739 - -3.0
484,743 + +0.6
484,744 - -0.8
484,760 + +0.6
484,761 - +0.3
484,761 - -2.6
484,888 + -1.2
484,888 + -2.8
484,889 - -0.1
485,036 + -2.2
485,093 - Psest_0445 0.10 -2.0

Or see this region's nucleotide sequence