Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0042

Experiment: Cephalothin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0041 and Psest_0042 are separated by 118 nucleotidesPsest_0042 and Psest_0043 are separated by 143 nucleotidesPsest_0043 and Psest_0044 are separated by 224 nucleotides Psest_0041: Psest_0041 - Uncharacterized protein conserved in bacteria, at 43,886 to 45,367 _0041 Psest_0042: Psest_0042 - Transcriptional regulator, at 45,486 to 46,388 _0042 Psest_0043: Psest_0043 - Predicted membrane protein, at 46,532 to 47,083 _0043 Psest_0044: Psest_0044 - Nuclease-related domain., at 47,308 to 47,583 _0044 Position (kb) 45 46 47Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 44.558 kb on + strand, within Psest_0041at 44.558 kb on + strand, within Psest_0041at 44.558 kb on + strand, within Psest_0041at 44.559 kb on - strand, within Psest_0041at 44.559 kb on - strand, within Psest_0041at 44.559 kb on - strand, within Psest_0041at 45.263 kb on + strandat 45.263 kb on + strandat 45.263 kb on + strandat 45.264 kb on - strandat 45.484 kb on - strandat 45.574 kb on + strandat 45.574 kb on + strandat 45.574 kb on + strandat 45.574 kb on + strandat 45.574 kb on - strandat 45.575 kb on - strandat 45.575 kb on - strandat 45.575 kb on - strandat 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.827 kb on + strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.828 kb on - strand, within Psest_0043at 46.992 kb on - strand, within Psest_0043at 47.002 kb on + strand, within Psest_0043at 47.003 kb on - strand, within Psest_0043at 47.003 kb on - strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.004 kb on + strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.005 kb on - strand, within Psest_0043at 47.033 kb on + strandat 47.034 kb on - strandat 47.084 kb on - strandat 47.084 kb on - strandat 47.092 kb on + strandat 47.092 kb on + strandat 47.092 kb on + strandat 47.092 kb on + strandat 47.092 kb on + strandat 47.092 kb on + strandat 47.092 kb on + strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.093 kb on - strandat 47.111 kb on + strandat 47.111 kb on + strandat 47.112 kb on - strandat 47.112 kb on - strandat 47.112 kb on - strandat 47.303 kb on + strandat 47.303 kb on + strandat 47.304 kb on - strandat 47.304 kb on - strandat 47.304 kb on - strandat 47.304 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml
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44,558 + Psest_0041 0.45 -0.3
44,558 + Psest_0041 0.45 +0.5
44,558 + Psest_0041 0.45 -2.7
44,559 - Psest_0041 0.45 +0.6
44,559 - Psest_0041 0.45 -0.6
44,559 - Psest_0041 0.45 -0.5
45,263 + +1.6
45,263 + -0.2
45,263 + +1.0
45,264 - +0.2
45,484 - -1.0
45,574 + +2.6
45,574 + +0.0
45,574 + +0.6
45,574 + -1.4
45,574 - -0.4
45,575 - -1.0
45,575 - -1.6
45,575 - +1.1
46,827 + Psest_0043 0.53 +0.0
46,827 + Psest_0043 0.53 -2.4
46,827 + Psest_0043 0.53 -2.4
46,827 + Psest_0043 0.53 -3.0
46,827 + Psest_0043 0.53 -0.2
46,827 + Psest_0043 0.53 -1.0
46,827 + Psest_0043 0.53 -1.8
46,827 + Psest_0043 0.53 -0.6
46,827 + Psest_0043 0.53 -3.6
46,827 + Psest_0043 0.53 -0.3
46,827 + Psest_0043 0.53 -1.3
46,827 + Psest_0043 0.53 -3.6
46,827 + Psest_0043 0.53 -2.5
46,827 + Psest_0043 0.53 -2.9
46,827 + Psest_0043 0.53 -1.2
46,827 + Psest_0043 0.53 -4.2
46,828 - Psest_0043 0.54 +0.7
46,828 - Psest_0043 0.54 +1.4
46,828 - Psest_0043 0.54 +0.4
46,828 - Psest_0043 0.54 -0.6
46,828 - Psest_0043 0.54 +0.0
46,828 - Psest_0043 0.54 +1.2
46,828 - Psest_0043 0.54 -0.1
46,828 - Psest_0043 0.54 -0.0
46,828 - Psest_0043 0.54 +0.1
46,828 - Psest_0043 0.54 +1.4
46,828 - Psest_0043 0.54 -1.3
46,828 - Psest_0043 0.54 -0.5
46,828 - Psest_0043 0.54 +0.8
46,828 - Psest_0043 0.54 +1.4
46,828 - Psest_0043 0.54 -0.6
46,828 - Psest_0043 0.54 +0.4
46,828 - Psest_0043 0.54 +0.5
46,828 - Psest_0043 0.54 +1.2
46,828 - Psest_0043 0.54 -0.6
46,828 - Psest_0043 0.54 +0.3
46,828 - Psest_0043 0.54 -0.9
46,828 - Psest_0043 0.54 -0.2
46,992 - Psest_0043 0.83 +0.4
47,002 + Psest_0043 0.85 +1.0
47,003 - Psest_0043 0.85 -1.0
47,003 - Psest_0043 0.85 -1.6
47,004 + Psest_0043 0.86 -0.2
47,004 + Psest_0043 0.86 -0.4
47,004 + Psest_0043 0.86 +0.0
47,004 + Psest_0043 0.86 +0.2
47,004 + Psest_0043 0.86 +0.5
47,004 + Psest_0043 0.86 -1.8
47,004 + Psest_0043 0.86 -1.0
47,004 + Psest_0043 0.86 -2.5
47,004 + Psest_0043 0.86 +0.3
47,004 + Psest_0043 0.86 -1.6
47,004 + Psest_0043 0.86 +0.5
47,004 + Psest_0043 0.86 +0.0
47,004 + Psest_0043 0.86 -1.2
47,004 + Psest_0043 0.86 -0.0
47,004 + Psest_0043 0.86 -0.4
47,005 - Psest_0043 0.86 -0.4
47,005 - Psest_0043 0.86 -0.1
47,005 - Psest_0043 0.86 +0.0
47,005 - Psest_0043 0.86 +1.4
47,005 - Psest_0043 0.86 -0.5
47,005 - Psest_0043 0.86 +0.4
47,005 - Psest_0043 0.86 +2.1
47,005 - Psest_0043 0.86 +0.3
47,005 - Psest_0043 0.86 +0.8
47,005 - Psest_0043 0.86 +0.8
47,005 - Psest_0043 0.86 -0.3
47,005 - Psest_0043 0.86 -0.6
47,005 - Psest_0043 0.86 -0.0
47,005 - Psest_0043 0.86 +0.2
47,033 + -0.5
47,034 - -0.6
47,084 - -0.2
47,084 - -0.2
47,092 + -1.4
47,092 + +0.6
47,092 + -1.0
47,092 + +0.8
47,092 + -0.2
47,092 + +1.4
47,092 + +0.5
47,093 - +1.9
47,093 - -1.4
47,093 - +1.4
47,093 - +1.4
47,093 - -0.1
47,093 - +0.9
47,093 - -0.3
47,093 - +1.0
47,093 - +0.2
47,093 - +0.1
47,093 - -1.2
47,093 - -1.5
47,093 - +0.5
47,093 - -1.5
47,093 - -0.4
47,093 - -0.2
47,093 - -0.1
47,093 - -0.1
47,093 - +0.1
47,093 - +0.8
47,093 - -1.0
47,111 + -0.7
47,111 + -0.5
47,112 - +0.4
47,112 - +1.6
47,112 - -0.6
47,303 + -1.0
47,303 + -1.0
47,304 - -1.4
47,304 - -0.7
47,304 - -0.4
47,304 - -0.2

Or see this region's nucleotide sequence