Experiment: Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0408 and Psest_0409 are separated by 489 nucleotides Psest_0409 and Psest_0410 are separated by 71 nucleotides Psest_0410 and Psest_0411 are separated by 93 nucleotides
Psest_0408: Psest_0408 - Protein involved in catabolism of external DNA, at 443,417 to 444,265
_0408
Psest_0409: Psest_0409 - Putative homoserine kinase type II (protein kinase fold), at 444,755 to 445,729
_0409
Psest_0410: Psest_0410 - Predicted amidophosphoribosyltransferases, at 445,801 to 446,505
_0410
Psest_0411: Psest_0411 - biotin synthetase, at 446,599 to 447,654
_0411
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 443.953 kb on + strand, within Psest_0408 at 443.954 kb on - strand, within Psest_0408 at 444.035 kb on + strand, within Psest_0408 at 444.035 kb on + strand, within Psest_0408 at 444.036 kb on - strand, within Psest_0408 at 444.253 kb on + strand at 444.254 kb on - strand at 444.310 kb on + strand at 444.310 kb on + strand at 444.310 kb on + strand at 444.310 kb on + strand at 444.311 kb on - strand at 444.311 kb on - strand at 444.311 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.757 kb on - strand at 444.903 kb on + strand, within Psest_0409 at 444.903 kb on + strand, within Psest_0409 at 445.219 kb on - strand, within Psest_0409 at 445.615 kb on - strand, within Psest_0409 at 445.711 kb on + strand at 445.747 kb on - strand at 445.760 kb on + strand at 445.777 kb on + strand at 445.778 kb on - strand at 445.778 kb on - strand at 445.835 kb on + strand at 445.835 kb on + strand at 445.836 kb on - strand at 445.836 kb on - strand at 446.266 kb on - strand, within Psest_0410 at 446.318 kb on + strand, within Psest_0410 at 446.319 kb on - strand, within Psest_0410 at 446.430 kb on + strand, within Psest_0410 at 446.430 kb on + strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.581 kb on + strand at 446.581 kb on + strand at 446.581 kb on + strand at 446.581 kb on + strand at 446.582 kb on - strand at 446.582 kb on - strand at 446.585 kb on + strand at 446.585 kb on + strand at 446.585 kb on + strand at 446.585 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml remove 443,953 + Psest_0408 0.63 +0.9 443,954 - Psest_0408 0.63 +3.2 444,035 + Psest_0408 0.73 +1.6 444,035 + Psest_0408 0.73 +1.2 444,036 - Psest_0408 0.73 -0.2 444,253 + +1.7 444,254 - +1.9 444,310 + +2.7 444,310 + +1.1 444,310 + +1.3 444,310 + +0.4 444,311 - -1.2 444,311 - +1.6 444,311 - -0.5 444,467 - +1.6 444,467 - +0.1 444,467 - +1.1 444,467 - -0.7 444,467 - +0.6 444,467 - -1.7 444,467 - -0.2 444,467 - +0.6 444,467 - +0.1 444,622 + -0.7 444,622 + -0.2 444,622 + +0.8 444,622 + -2.3 444,622 + -0.4 444,711 + -0.1 444,711 + +0.4 444,711 + -0.8 444,711 + -1.9 444,711 + -1.6 444,712 - +1.0 444,712 - +1.3 444,712 - +0.7 444,712 - +0.2 444,712 - +1.1 444,712 - +0.5 444,712 - +0.9 444,712 - +1.7 444,712 - +1.1 444,712 - +1.9 444,712 - +0.8 444,712 - +0.6 444,712 - +0.1 444,712 - +0.9 444,757 - +2.9 444,903 + Psest_0409 0.15 -0.3 444,903 + Psest_0409 0.15 -1.3 445,219 - Psest_0409 0.48 -1.3 445,615 - Psest_0409 0.88 -1.1 445,711 + -1.7 445,747 - -0.2 445,760 + +0.3 445,777 + +0.7 445,778 - -1.1 445,778 - +1.1 445,835 + +1.2 445,835 + +2.8 445,836 - -0.3 445,836 - -0.6 446,266 - Psest_0410 0.66 +1.0 446,318 + Psest_0410 0.73 -1.0 446,319 - Psest_0410 0.73 +0.1 446,430 + Psest_0410 0.89 -3.7 446,430 + Psest_0410 0.89 -1.7 446,431 - Psest_0410 0.89 +0.7 446,431 - Psest_0410 0.89 -0.1 446,431 - Psest_0410 0.89 -0.5 446,431 - Psest_0410 0.89 +0.0 446,431 - Psest_0410 0.89 +0.5 446,581 + -1.0 446,581 + -0.3 446,581 + +0.3 446,581 + +2.7 446,582 - -1.3 446,582 - -2.9 446,585 + -1.4 446,585 + -0.5 446,585 + -1.8 446,585 + -0.5
Or see this region's nucleotide sequence