Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04060 and PGA1_c04070 overlap by 1 nucleotides PGA1_c04070 and PGA1_c04080 are separated by 73 nucleotides PGA1_c04080 and PGA1_c04090 are separated by 23 nucleotides
PGA1_c04060: PGA1_c04060 - phenylacetic acid degradation protein PaaC, at 391,449 to 392,222
_c04060
PGA1_c04070: PGA1_c04070 - phenylacetic acid degradation protein PaaB, at 392,222 to 392,506
_c04070
PGA1_c04080: PGA1_c04080 - phenylacetic acid degradation protein PaaA, at 392,580 to 393,557
_c04080
PGA1_c04090: PGA1_c04090 - beta-ketoadipyl-CoA thiolase PaaJ, at 393,581 to 394,783
_c04090
Position (kb) 392
393
394 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 391.580 kb on - strand, within PGA1_c04060 at 391.592 kb on + strand, within PGA1_c04060 at 391.642 kb on + strand, within PGA1_c04060 at 391.692 kb on + strand, within PGA1_c04060 at 391.719 kb on + strand, within PGA1_c04060 at 391.767 kb on - strand, within PGA1_c04060 at 391.808 kb on - strand, within PGA1_c04060 at 391.858 kb on - strand, within PGA1_c04060 at 391.866 kb on - strand, within PGA1_c04060 at 392.028 kb on - strand, within PGA1_c04060 at 392.028 kb on - strand, within PGA1_c04060 at 392.028 kb on - strand, within PGA1_c04060 at 392.073 kb on - strand, within PGA1_c04060 at 392.073 kb on - strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.121 kb on + strand, within PGA1_c04060 at 392.151 kb on + strand at 392.178 kb on - strand at 392.217 kb on + strand at 392.217 kb on + strand at 392.268 kb on + strand, within PGA1_c04070 at 392.275 kb on + strand, within PGA1_c04070 at 392.276 kb on - strand, within PGA1_c04070 at 392.282 kb on - strand, within PGA1_c04070 at 392.283 kb on - strand, within PGA1_c04070 at 392.329 kb on - strand, within PGA1_c04070 at 392.378 kb on + strand, within PGA1_c04070 at 392.386 kb on + strand, within PGA1_c04070 at 392.433 kb on + strand, within PGA1_c04070 at 392.439 kb on + strand, within PGA1_c04070 at 392.441 kb on - strand, within PGA1_c04070 at 392.457 kb on - strand, within PGA1_c04070 at 392.457 kb on - strand, within PGA1_c04070 at 392.522 kb on + strand at 392.530 kb on - strand at 392.537 kb on + strand at 392.577 kb on + strand at 392.577 kb on + strand at 392.580 kb on - strand at 392.656 kb on + strand at 392.663 kb on - strand at 392.664 kb on - strand at 392.675 kb on + strand at 392.677 kb on + strand at 392.685 kb on - strand, within PGA1_c04080 at 392.701 kb on + strand, within PGA1_c04080 at 392.715 kb on - strand, within PGA1_c04080 at 392.804 kb on + strand, within PGA1_c04080 at 392.810 kb on + strand, within PGA1_c04080 at 392.852 kb on - strand, within PGA1_c04080 at 392.874 kb on - strand, within PGA1_c04080 at 392.902 kb on + strand, within PGA1_c04080 at 392.924 kb on - strand, within PGA1_c04080 at 393.008 kb on - strand, within PGA1_c04080 at 393.025 kb on + strand, within PGA1_c04080 at 393.096 kb on - strand, within PGA1_c04080 at 393.136 kb on + strand, within PGA1_c04080 at 393.169 kb on + strand, within PGA1_c04080 at 393.262 kb on - strand, within PGA1_c04080 at 393.271 kb on + strand, within PGA1_c04080 at 393.271 kb on + strand, within PGA1_c04080 at 393.271 kb on + strand, within PGA1_c04080 at 393.271 kb on + strand, within PGA1_c04080 at 393.279 kb on - strand, within PGA1_c04080 at 393.281 kb on + strand, within PGA1_c04080 at 393.282 kb on + strand, within PGA1_c04080 at 393.289 kb on - strand, within PGA1_c04080 at 393.298 kb on + strand, within PGA1_c04080 at 393.306 kb on - strand, within PGA1_c04080 at 393.306 kb on - strand, within PGA1_c04080 at 393.366 kb on + strand, within PGA1_c04080 at 393.375 kb on - strand, within PGA1_c04080 at 393.420 kb on + strand, within PGA1_c04080 at 393.420 kb on + strand, within PGA1_c04080 at 393.468 kb on + strand at 393.476 kb on - strand at 393.509 kb on + strand at 393.519 kb on + strand at 393.527 kb on - strand at 393.569 kb on + strand at 393.577 kb on - strand at 393.588 kb on + strand at 393.596 kb on + strand at 393.719 kb on + strand, within PGA1_c04090 at 393.724 kb on + strand, within PGA1_c04090 at 393.759 kb on - strand, within PGA1_c04090 at 393.856 kb on - strand, within PGA1_c04090 at 393.863 kb on + strand, within PGA1_c04090 at 393.863 kb on + strand, within PGA1_c04090 at 393.863 kb on + strand, within PGA1_c04090 at 393.871 kb on - strand, within PGA1_c04090 at 393.871 kb on - strand, within PGA1_c04090 at 393.913 kb on + strand, within PGA1_c04090 at 393.921 kb on - strand, within PGA1_c04090 at 393.956 kb on + strand, within PGA1_c04090 at 394.011 kb on - strand, within PGA1_c04090 at 394.076 kb on - strand, within PGA1_c04090 at 394.133 kb on - strand, within PGA1_c04090 at 394.143 kb on + strand, within PGA1_c04090 at 394.143 kb on + strand, within PGA1_c04090 at 394.151 kb on - strand, within PGA1_c04090 at 394.153 kb on + strand, within PGA1_c04090 at 394.193 kb on + strand, within PGA1_c04090 at 394.230 kb on - strand, within PGA1_c04090 at 394.262 kb on + strand, within PGA1_c04090 at 394.280 kb on + strand, within PGA1_c04090 at 394.280 kb on + strand, within PGA1_c04090 at 394.361 kb on + strand, within PGA1_c04090 at 394.361 kb on + strand, within PGA1_c04090 at 394.361 kb on + strand, within PGA1_c04090 at 394.369 kb on - strand, within PGA1_c04090 at 394.382 kb on + strand, within PGA1_c04090 at 394.396 kb on - strand, within PGA1_c04090 at 394.417 kb on - strand, within PGA1_c04090 at 394.424 kb on + strand, within PGA1_c04090 at 394.465 kb on + strand, within PGA1_c04090 at 394.548 kb on + strand, within PGA1_c04090
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 391,580 - PGA1_c04060 0.17 +3.0 391,592 + PGA1_c04060 0.18 +0.4 391,642 + PGA1_c04060 0.25 +0.3 391,692 + PGA1_c04060 0.31 -0.8 391,719 + PGA1_c04060 0.35 +0.8 391,767 - PGA1_c04060 0.41 +1.5 391,808 - PGA1_c04060 0.46 +0.2 391,858 - PGA1_c04060 0.53 +1.8 391,866 - PGA1_c04060 0.54 +2.7 392,028 - PGA1_c04060 0.75 +2.6 392,028 - PGA1_c04060 0.75 +1.2 392,028 - PGA1_c04060 0.75 +1.6 392,073 - PGA1_c04060 0.81 +0.2 392,073 - PGA1_c04060 0.81 +3.0 392,080 + PGA1_c04060 0.82 +1.5 392,080 + PGA1_c04060 0.82 -1.2 392,080 + PGA1_c04060 0.82 -3.8 392,080 + PGA1_c04060 0.82 +0.4 392,080 + PGA1_c04060 0.82 +0.2 392,080 + PGA1_c04060 0.82 +0.5 392,088 - PGA1_c04060 0.83 +2.1 392,088 - PGA1_c04060 0.83 +1.9 392,088 - PGA1_c04060 0.83 +1.2 392,088 - PGA1_c04060 0.83 +2.1 392,088 - PGA1_c04060 0.83 +1.3 392,121 + PGA1_c04060 0.87 +1.0 392,151 + -2.1 392,178 - -0.7 392,217 + +0.0 392,217 + +1.1 392,268 + PGA1_c04070 0.16 +0.1 392,275 + PGA1_c04070 0.19 -1.1 392,276 - PGA1_c04070 0.19 +1.5 392,282 - PGA1_c04070 0.21 +1.2 392,283 - PGA1_c04070 0.21 +0.5 392,329 - PGA1_c04070 0.38 +2.1 392,378 + PGA1_c04070 0.55 -1.3 392,386 + PGA1_c04070 0.58 +0.5 392,433 + PGA1_c04070 0.74 +1.0 392,439 + PGA1_c04070 0.76 +0.3 392,441 - PGA1_c04070 0.77 +2.6 392,457 - PGA1_c04070 0.82 +1.2 392,457 - PGA1_c04070 0.82 +2.0 392,522 + +1.1 392,530 - +0.6 392,537 + +0.8 392,577 + +1.7 392,577 + +0.4 392,580 - -1.8 392,656 + +1.5 392,663 - +2.8 392,664 - +1.9 392,675 + +0.4 392,677 + +0.6 392,685 - PGA1_c04080 0.11 +0.8 392,701 + PGA1_c04080 0.12 +2.1 392,715 - PGA1_c04080 0.14 +1.3 392,804 + PGA1_c04080 0.23 +0.4 392,810 + PGA1_c04080 0.24 -1.4 392,852 - PGA1_c04080 0.28 +1.5 392,874 - PGA1_c04080 0.30 +2.0 392,902 + PGA1_c04080 0.33 -1.7 392,924 - PGA1_c04080 0.35 +3.5 393,008 - PGA1_c04080 0.44 +1.6 393,025 + PGA1_c04080 0.46 -0.4 393,096 - PGA1_c04080 0.53 +1.5 393,136 + PGA1_c04080 0.57 -0.2 393,169 + PGA1_c04080 0.60 +0.9 393,262 - PGA1_c04080 0.70 +1.5 393,271 + PGA1_c04080 0.71 -0.4 393,271 + PGA1_c04080 0.71 -1.2 393,271 + PGA1_c04080 0.71 +1.5 393,271 + PGA1_c04080 0.71 +0.8 393,279 - PGA1_c04080 0.71 -0.1 393,281 + PGA1_c04080 0.72 +0.7 393,282 + PGA1_c04080 0.72 +0.1 393,289 - PGA1_c04080 0.72 +1.5 393,298 + PGA1_c04080 0.73 -0.3 393,306 - PGA1_c04080 0.74 +1.1 393,306 - PGA1_c04080 0.74 +2.7 393,366 + PGA1_c04080 0.80 -0.9 393,375 - PGA1_c04080 0.81 +1.5 393,420 + PGA1_c04080 0.86 +0.0 393,420 + PGA1_c04080 0.86 -2.6 393,468 + +1.9 393,476 - +0.8 393,509 + -0.8 393,519 + +1.0 393,527 - +2.0 393,569 + +0.3 393,577 - -0.3 393,588 + +0.5 393,596 + -0.3 393,719 + PGA1_c04090 0.11 -0.4 393,724 + PGA1_c04090 0.12 -2.1 393,759 - PGA1_c04090 0.15 -0.6 393,856 - PGA1_c04090 0.23 +0.2 393,863 + PGA1_c04090 0.23 -0.9 393,863 + PGA1_c04090 0.23 -1.0 393,863 + PGA1_c04090 0.23 -0.0 393,871 - PGA1_c04090 0.24 -2.5 393,871 - PGA1_c04090 0.24 -2.2 393,913 + PGA1_c04090 0.28 +0.3 393,921 - PGA1_c04090 0.28 +1.6 393,956 + PGA1_c04090 0.31 -2.6 394,011 - PGA1_c04090 0.36 -0.9 394,076 - PGA1_c04090 0.41 -0.8 394,133 - PGA1_c04090 0.46 -1.1 394,143 + PGA1_c04090 0.47 -1.3 394,143 + PGA1_c04090 0.47 -0.3 394,151 - PGA1_c04090 0.47 -1.5 394,153 + PGA1_c04090 0.48 +1.5 394,193 + PGA1_c04090 0.51 -0.3 394,230 - PGA1_c04090 0.54 -2.6 394,262 + PGA1_c04090 0.57 -0.8 394,280 + PGA1_c04090 0.58 -1.5 394,280 + PGA1_c04090 0.58 -1.1 394,361 + PGA1_c04090 0.65 -1.4 394,361 + PGA1_c04090 0.65 -0.8 394,361 + PGA1_c04090 0.65 +0.2 394,369 - PGA1_c04090 0.66 -1.7 394,382 + PGA1_c04090 0.67 +0.5 394,396 - PGA1_c04090 0.68 -3.1 394,417 - PGA1_c04090 0.69 -1.2 394,424 + PGA1_c04090 0.70 -1.1 394,465 + PGA1_c04090 0.73 +0.7 394,548 + PGA1_c04090 0.80 +0.8
Or see this region's nucleotide sequence