Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3920

Experiment: Cephalothin 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.04 mg/ml
4,087,122	+		Psest_3919	0.15	+1.1
4,087,123	-		Psest_3919	0.15	-0.5
4,087,185	-		Psest_3919	0.22	+0.2
4,087,260	-		Psest_3919	0.30	+1.2
4,087,260	-		Psest_3919	0.30	+0.7
4,087,346	+		Psest_3919	0.40	-1.1
4,087,346	+		Psest_3919	0.40	-1.8
4,087,404	+		Psest_3919	0.46	-1.5
4,087,405	-		Psest_3919	0.46	+0.1
4,087,405	-		Psest_3919	0.46	-0.3
4,087,405	-		Psest_3919	0.46	-1.3
4,087,432	-		Psest_3919	0.49	-3.8
4,087,432	-		Psest_3919	0.49	+2.2
4,087,442	+		Psest_3919	0.50	-1.2
4,087,559	+		Psest_3919	0.63	-1.1
4,087,572	+		Psest_3919	0.65	+0.3
4,087,572	+		Psest_3919	0.65	-0.9
4,087,572	+		Psest_3919	0.65	-1.3
4,087,678	-		Psest_3919	0.76	-1.3
4,087,678	-		Psest_3919	0.76	+0.1
4,087,847	+				-1.9
4,087,896	-				-1.0
4,087,926	+				+1.0
4,087,957	-				-0.1
4,087,957	-				-0.4
4,087,990	+				-1.1
4,087,990	+				-0.8
4,088,162	+		Psest_3920	0.16	-1.3
4,088,162	+		Psest_3920	0.16	-1.2
4,088,162	+		Psest_3920	0.16	-0.3
4,088,163	-		Psest_3920	0.16	-0.3
4,088,163	-		Psest_3920	0.16	-0.7
4,088,163	-		Psest_3920	0.16	-1.4
4,088,178	-		Psest_3920	0.17	-0.5
4,088,231	+		Psest_3920	0.22	-0.4
4,088,232	-		Psest_3920	0.22	-0.5
4,088,232	-		Psest_3920	0.22	-0.5
4,088,286	-		Psest_3920	0.26	-0.7
4,088,286	-		Psest_3920	0.26	-0.9
4,088,286	-		Psest_3920	0.26	+0.1
4,088,286	-		Psest_3920	0.26	-0.8
4,088,342	+		Psest_3920	0.31	-0.1
4,088,342	+		Psest_3920	0.31	-0.9
4,088,342	+		Psest_3920	0.31	-0.8
4,088,342	+		Psest_3920	0.31	-1.5
4,088,342	+		Psest_3920	0.31	-1.2
4,088,342	+		Psest_3920	0.31	-3.2
4,088,343	-		Psest_3920	0.31	+0.8
4,088,343	-		Psest_3920	0.31	-1.4
4,088,343	-		Psest_3920	0.31	+0.0
4,088,432	+		Psest_3920	0.39	-0.9
4,088,600	+		Psest_3920	0.53	-2.0
4,088,601	-		Psest_3920	0.54	-2.0
4,088,601	-		Psest_3920	0.54	+1.3
4,088,601	-		Psest_3920	0.54	-0.3
4,088,612	+		Psest_3920	0.55	+0.5
4,088,612	+		Psest_3920	0.55	+0.1
4,088,612	+		Psest_3920	0.55	-0.9
4,088,656	+		Psest_3920	0.58	-1.1
4,088,657	-		Psest_3920	0.58	-1.5
4,088,657	-		Psest_3920	0.58	-0.1
4,088,657	-		Psest_3920	0.58	-2.9
4,088,658	+		Psest_3920	0.58	-2.0
4,088,658	+		Psest_3920	0.58	-0.5
4,088,658	+		Psest_3920	0.58	-2.1
4,088,658	+		Psest_3920	0.58	-2.2
4,088,658	+		Psest_3920	0.58	+0.1
4,088,658	+		Psest_3920	0.58	-0.4
4,088,658	+		Psest_3920	0.58	-1.3
4,088,659	-		Psest_3920	0.59	-1.0
4,088,659	-		Psest_3920	0.59	-1.3
4,088,659	-		Psest_3920	0.59	-1.1
4,088,744	+		Psest_3920	0.66	-0.8
4,088,801	+		Psest_3920	0.71	-1.2
4,088,801	+		Psest_3920	0.71	+0.7
4,088,822	+		Psest_3920	0.73	-1.0
4,088,823	-		Psest_3920	0.73	-1.3
4,088,823	-		Psest_3920	0.73	+0.7
4,088,823	-		Psest_3920	0.73	-0.5
4,088,846	+		Psest_3920	0.75	-1.3
4,088,888	+		Psest_3920	0.78	-1.0
4,088,888	+		Psest_3920	0.78	+1.3
4,088,889	-		Psest_3920	0.78	+0.5
4,088,889	-		Psest_3920	0.78	-2.6
4,088,912	+		Psest_3920	0.80	-1.5
4,088,912	+		Psest_3920	0.80	-0.4
4,088,912	+		Psest_3920	0.80	+0.8
4,088,912	+		Psest_3920	0.80	-0.7
4,088,912	+		Psest_3920	0.80	+0.9
4,088,913	-		Psest_3920	0.80	-1.7
4,088,913	-		Psest_3920	0.80	-1.2
4,088,913	-		Psest_3920	0.80	-1.8
4,088,913	-		Psest_3920	0.80	+2.5
4,088,913	-		Psest_3920	0.80	+0.9
4,088,913	-		Psest_3920	0.80	+0.4
4,088,913	-		Psest_3920	0.80	-1.3
4,088,964	-		Psest_3920	0.85	-0.1
4,089,111	+				-0.7
4,089,112	-				-2.7
4,089,225	+				-0.5
4,089,225	+				-0.9
4,089,360	+				-0.4
4,089,361	-				+0.0
4,089,361	-				+1.5
4,089,370	+				-2.6
4,089,370	+				+0.1
4,089,370	+				+0.5
4,089,370	+				-0.1
4,089,370	+				-0.1
4,089,370	+				+1.8
4,089,370	+				-0.1
4,089,370	+				-0.9
4,089,370	+				-0.4
4,089,370	+				-0.3
4,089,370	+				-1.5
4,089,370	+				-2.5
4,089,370	+				-0.5
4,089,370	+				-1.2
4,089,371	-				+0.4
4,089,371	-				-0.9
4,089,371	-				+0.8
4,089,371	-				-0.0
4,089,371	-				+0.1
4,089,371	-				-0.3
4,089,371	-				-1.0
4,089,371	-				-1.8
4,089,371	-				-1.4
4,089,371	-				-0.7
4,089,371	-				-1.0
4,089,371	-				-0.4
4,089,371	-				-1.0
4,089,371	-				-0.9
4,089,371	-				-0.7
4,089,371	-				-0.5
4,089,371	-				-0.5
4,089,371	-				-0.4
4,089,371	-				+0.1
4,089,372	+				-0.5
4,089,372	+				+2.0
4,089,372	+				-0.4
4,089,372	+				+0.9
4,089,372	+				-2.2
4,089,372	+				+0.0
4,089,373	-				-0.3
4,089,373	-				-1.3
4,089,373	-				+0.1
4,089,373	-				+0.9
4,089,373	-				+0.3
4,089,415	+				-0.8
4,089,415	+				-2.2
4,089,415	+				-0.1
4,089,415	+				+1.2
4,089,415	+				+0.7
4,089,416	-				-0.4
4,089,416	-				-1.5
4,089,416	-				+0.3
4,089,416	-				-0.1
4,089,416	-				+0.1
4,089,416	-				+0.0
4,089,416	-				-0.7
4,089,416	-				-0.7
4,089,416	-				-3.4
4,089,417	+				-0.9
4,089,417	+				+0.9
4,089,429	+				+0.9
4,089,430	-				-0.9
4,089,430	-				-0.0
4,089,861	+		Psest_3921	0.89	-1.3
4,089,862	-		Psest_3921	0.89	+0.4
4,089,862	-		Psest_3921	0.89	-0.8
4,089,910	-				-1.9
4,089,966	-				-0.8
4,090,104	-		Psest_3922	0.14	-1.8
4,090,123	+		Psest_3922	0.17	+0.4
4,090,124	-		Psest_3922	0.17	+0.7
4,090,124	-		Psest_3922	0.17	+0.1
4,090,124	-		Psest_3922	0.17	+0.8