Experiment: Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3911 and Psest_3912 overlap by 8 nucleotides Psest_3912 and Psest_3913 are separated by 149 nucleotides Psest_3913 and Psest_3914 are separated by 307 nucleotides
Psest_3911: Psest_3911 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 4,079,714 to 4,081,102
_3911
Psest_3912: Psest_3912 - His Kinase A (phosphoacceptor) domain./HAMP domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 4,081,095 to 4,082,576
_3912
Psest_3913: Psest_3913 - hypothetical protein, at 4,082,726 to 4,083,118
_3913
Psest_3914: Psest_3914 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 4,083,426 to 4,084,319
_3914
Position (kb)
4081
4082
4083 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4080.263 kb on + strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.263 kb on + strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.264 kb on - strand, within Psest_3911 at 4080.434 kb on - strand, within Psest_3911 at 4080.434 kb on - strand, within Psest_3911 at 4081.296 kb on + strand, within Psest_3912 at 4081.489 kb on - strand, within Psest_3912 at 4082.158 kb on + strand, within Psest_3912 at 4082.158 kb on + strand, within Psest_3912 at 4082.159 kb on - strand, within Psest_3912 at 4082.159 kb on - strand, within Psest_3912 at 4082.164 kb on + strand, within Psest_3912 at 4082.164 kb on + strand, within Psest_3912 at 4082.191 kb on + strand, within Psest_3912 at 4082.192 kb on - strand, within Psest_3912 at 4082.192 kb on - strand, within Psest_3912 at 4082.270 kb on - strand, within Psest_3912 at 4082.296 kb on + strand, within Psest_3912 at 4082.296 kb on + strand, within Psest_3912 at 4082.296 kb on + strand, within Psest_3912 at 4082.296 kb on + strand, within Psest_3912 at 4082.296 kb on + strand, within Psest_3912 at 4082.297 kb on - strand, within Psest_3912 at 4082.297 kb on - strand, within Psest_3912 at 4082.297 kb on - strand, within Psest_3912 at 4082.297 kb on - strand, within Psest_3912 at 4082.302 kb on + strand, within Psest_3912 at 4082.302 kb on + strand, within Psest_3912 at 4082.302 kb on + strand, within Psest_3912 at 4082.303 kb on - strand, within Psest_3912 at 4082.303 kb on - strand, within Psest_3912 at 4082.303 kb on - strand, within Psest_3912 at 4082.312 kb on - strand, within Psest_3912 at 4082.400 kb on + strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.538 kb on + strand at 4082.539 kb on - strand at 4082.565 kb on + strand at 4082.566 kb on - strand at 4082.566 kb on - strand at 4082.566 kb on - strand at 4082.578 kb on + strand at 4082.579 kb on - strand at 4082.579 kb on - strand at 4082.579 kb on - strand at 4082.579 kb on - strand at 4082.587 kb on + strand at 4082.588 kb on - strand at 4082.656 kb on - strand at 4083.044 kb on + strand, within Psest_3913 at 4083.044 kb on + strand, within Psest_3913 at 4083.044 kb on + strand, within Psest_3913 at 4083.045 kb on - strand, within Psest_3913 at 4083.045 kb on - strand, within Psest_3913 at 4083.045 kb on - strand, within Psest_3913 at 4083.341 kb on + strand at 4083.341 kb on + strand at 4083.342 kb on - strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.473 kb on - strand at 4083.473 kb on - strand at 4083.473 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml remove 4,080,263 + Psest_3911 0.40 -0.7 4,080,263 + Psest_3911 0.40 +0.7 4,080,263 + Psest_3911 0.40 +2.5 4,080,263 + Psest_3911 0.40 +1.1 4,080,263 + Psest_3911 0.40 +1.0 4,080,264 - Psest_3911 0.40 +1.2 4,080,264 - Psest_3911 0.40 -0.9 4,080,264 - Psest_3911 0.40 -0.9 4,080,264 - Psest_3911 0.40 -0.1 4,080,264 - Psest_3911 0.40 -2.0 4,080,434 - Psest_3911 0.52 -0.9 4,080,434 - Psest_3911 0.52 +1.1 4,081,296 + Psest_3912 0.14 -0.1 4,081,489 - Psest_3912 0.27 +2.5 4,082,158 + Psest_3912 0.72 -0.9 4,082,158 + Psest_3912 0.72 -2.4 4,082,159 - Psest_3912 0.72 +1.1 4,082,159 - Psest_3912 0.72 +0.5 4,082,164 + Psest_3912 0.72 -0.4 4,082,164 + Psest_3912 0.72 -0.5 4,082,191 + Psest_3912 0.74 -2.0 4,082,192 - Psest_3912 0.74 +2.8 4,082,192 - Psest_3912 0.74 -0.1 4,082,270 - Psest_3912 0.79 +2.1 4,082,296 + Psest_3912 0.81 -1.4 4,082,296 + Psest_3912 0.81 -3.1 4,082,296 + Psest_3912 0.81 -2.4 4,082,296 + Psest_3912 0.81 -0.9 4,082,296 + Psest_3912 0.81 -0.4 4,082,297 - Psest_3912 0.81 +0.1 4,082,297 - Psest_3912 0.81 -0.1 4,082,297 - Psest_3912 0.81 +1.5 4,082,297 - Psest_3912 0.81 +1.9 4,082,302 + Psest_3912 0.81 -2.1 4,082,302 + Psest_3912 0.81 -0.9 4,082,302 + Psest_3912 0.81 -1.7 4,082,303 - Psest_3912 0.82 -0.0 4,082,303 - Psest_3912 0.82 +0.7 4,082,303 - Psest_3912 0.82 -0.1 4,082,312 - Psest_3912 0.82 +0.1 4,082,400 + Psest_3912 0.88 -0.1 4,082,401 - Psest_3912 0.88 +0.5 4,082,401 - Psest_3912 0.88 +1.5 4,082,401 - Psest_3912 0.88 -0.5 4,082,401 - Psest_3912 0.88 -0.1 4,082,401 - Psest_3912 0.88 -0.2 4,082,401 - Psest_3912 0.88 -0.1 4,082,401 - Psest_3912 0.88 +0.1 4,082,401 - Psest_3912 0.88 -0.1 4,082,538 + -1.1 4,082,539 - +0.6 4,082,565 + -4.0 4,082,566 - -0.1 4,082,566 - +0.9 4,082,566 - -0.9 4,082,578 + -0.5 4,082,579 - +1.5 4,082,579 - -0.5 4,082,579 - -1.1 4,082,579 - -0.1 4,082,587 + -1.7 4,082,588 - -0.1 4,082,656 - +2.5 4,083,044 + Psest_3913 0.81 +1.0 4,083,044 + Psest_3913 0.81 +1.7 4,083,044 + Psest_3913 0.81 -0.4 4,083,045 - Psest_3913 0.81 +0.5 4,083,045 - Psest_3913 0.81 -2.2 4,083,045 - Psest_3913 0.81 -0.9 4,083,341 + -0.4 4,083,341 + -1.7 4,083,342 - +0.5 4,083,472 + -1.1 4,083,472 + +0.3 4,083,472 + +2.1 4,083,472 + +0.3 4,083,472 + -0.1 4,083,472 + -0.7 4,083,473 - +1.0 4,083,473 - +2.2 4,083,473 - +2.3
Or see this region's nucleotide sequence