Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00510 and PGA1_262p00520 are separated by 193 nucleotides PGA1_262p00520 and PGA1_262p00530 are separated by 9 nucleotides
PGA1_262p00510: PGA1_262p00510 - Predicted exonuclease of the beta-lactamase fold involved in RNA processing, at 58,625 to 59,638
_262p00510
PGA1_262p00520: PGA1_262p00520 - putative multi antimicrobial extrusion protein, at 59,832 to 61,166
_262p00520
PGA1_262p00530: PGA1_262p00530 - DNA topoisomerase 1B-like protein, at 61,176 to 62,153
_262p00530
Position (kb) 59
60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 58.915 kb on - strand, within PGA1_262p00510 at 58.923 kb on + strand, within PGA1_262p00510 at 59.107 kb on - strand, within PGA1_262p00510 at 59.342 kb on + strand, within PGA1_262p00510 at 59.348 kb on - strand, within PGA1_262p00510 at 59.348 kb on - strand, within PGA1_262p00510 at 59.374 kb on + strand, within PGA1_262p00510 at 59.374 kb on + strand, within PGA1_262p00510 at 59.437 kb on - strand, within PGA1_262p00510 at 59.482 kb on - strand, within PGA1_262p00510 at 59.515 kb on + strand, within PGA1_262p00510 at 59.559 kb on + strand at 59.590 kb on - strand at 59.681 kb on + strand at 59.753 kb on + strand at 59.816 kb on + strand at 59.956 kb on + strand at 59.985 kb on - strand, within PGA1_262p00520 at 59.990 kb on + strand, within PGA1_262p00520 at 59.993 kb on - strand, within PGA1_262p00520 at 59.993 kb on - strand, within PGA1_262p00520 at 59.998 kb on - strand, within PGA1_262p00520 at 60.137 kb on + strand, within PGA1_262p00520 at 60.166 kb on + strand, within PGA1_262p00520 at 60.166 kb on + strand, within PGA1_262p00520 at 60.340 kb on - strand, within PGA1_262p00520 at 60.461 kb on + strand, within PGA1_262p00520 at 60.569 kb on - strand, within PGA1_262p00520 at 60.611 kb on + strand, within PGA1_262p00520 at 60.661 kb on + strand, within PGA1_262p00520 at 60.740 kb on + strand, within PGA1_262p00520 at 60.807 kb on + strand, within PGA1_262p00520 at 60.807 kb on + strand, within PGA1_262p00520 at 60.826 kb on + strand, within PGA1_262p00520 at 61.002 kb on + strand, within PGA1_262p00520 at 61.137 kb on + strand at 61.226 kb on - strand at 61.249 kb on + strand at 61.272 kb on - strand at 61.389 kb on + strand, within PGA1_262p00530 at 61.499 kb on + strand, within PGA1_262p00530 at 61.595 kb on + strand, within PGA1_262p00530 at 61.808 kb on - strand, within PGA1_262p00530 at 61.867 kb on - strand, within PGA1_262p00530 at 61.867 kb on - strand, within PGA1_262p00530 at 62.111 kb on + strand at 62.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 58,915 - PGA1_262p00510 0.29 +0.4 58,923 + PGA1_262p00510 0.29 +0.8 59,107 - PGA1_262p00510 0.48 -1.0 59,342 + PGA1_262p00510 0.71 -0.6 59,348 - PGA1_262p00510 0.71 +0.2 59,348 - PGA1_262p00510 0.71 -1.4 59,374 + PGA1_262p00510 0.74 -0.6 59,374 + PGA1_262p00510 0.74 +1.2 59,437 - PGA1_262p00510 0.80 -1.2 59,482 - PGA1_262p00510 0.85 -0.1 59,515 + PGA1_262p00510 0.88 +0.7 59,559 + -1.8 59,590 - -0.6 59,681 + -1.2 59,753 + +2.7 59,816 + +0.7 59,956 + -2.1 59,985 - PGA1_262p00520 0.11 -1.0 59,990 + PGA1_262p00520 0.12 -0.5 59,993 - PGA1_262p00520 0.12 -0.7 59,993 - PGA1_262p00520 0.12 -2.0 59,998 - PGA1_262p00520 0.12 -1.4 60,137 + PGA1_262p00520 0.23 -0.0 60,166 + PGA1_262p00520 0.25 -0.1 60,166 + PGA1_262p00520 0.25 +0.1 60,340 - PGA1_262p00520 0.38 -0.7 60,461 + PGA1_262p00520 0.47 -0.4 60,569 - PGA1_262p00520 0.55 -0.6 60,611 + PGA1_262p00520 0.58 +1.4 60,661 + PGA1_262p00520 0.62 -1.2 60,740 + PGA1_262p00520 0.68 +0.1 60,807 + PGA1_262p00520 0.73 +0.3 60,807 + PGA1_262p00520 0.73 +0.0 60,826 + PGA1_262p00520 0.74 -0.6 61,002 + PGA1_262p00520 0.88 -1.2 61,137 + +0.6 61,226 - +0.3 61,249 + -0.3 61,272 - -3.3 61,389 + PGA1_262p00530 0.22 +1.8 61,499 + PGA1_262p00530 0.33 +0.1 61,595 + PGA1_262p00530 0.43 +0.1 61,808 - PGA1_262p00530 0.65 +0.4 61,867 - PGA1_262p00530 0.71 -1.0 61,867 - PGA1_262p00530 0.71 -0.5 62,111 + +1.4 62,129 - -0.3
Or see this region's nucleotide sequence