Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03730

Experiment: m.b. Sisomicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03710 and PGA1_c03720 are separated by 23 nucleotidesPGA1_c03720 and PGA1_c03730 are separated by 32 nucleotidesPGA1_c03730 and PGA1_c03740 are separated by 192 nucleotidesPGA1_c03740 and PGA1_c03750 are separated by 18 nucleotidesPGA1_c03750 and PGA1_c03760 are separated by 15 nucleotides PGA1_c03710: PGA1_c03710 - Acyl dehydratase, at 356,777 to 357,808 _c03710 PGA1_c03720: PGA1_c03720 - phosphoglycerate mutase-like protein, at 357,832 to 358,461 _c03720 PGA1_c03730: PGA1_c03730 - Protein of unknown function (DUF1194)., at 358,494 to 359,183 _c03730 PGA1_c03740: PGA1_c03740 - succinate dehydrogenase cytochrome b556 subunit, at 359,376 to 359,759 _c03740 PGA1_c03750: PGA1_c03750 - succinate dehydrogenase hydrophobic membrane anchor subunit, at 359,778 to 360,149 _c03750 PGA1_c03760: PGA1_c03760 - succinate dehydrogenase flavoprotein subunit, at 360,165 to 361,970 _c03760 Position (kb) 358 359 360Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 357.495 kb on - strand, within PGA1_c03710at 357.500 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.513 kb on - strand, within PGA1_c03710at 357.513 kb on - strand, within PGA1_c03710at 357.521 kb on - strand, within PGA1_c03710at 357.533 kb on - strand, within PGA1_c03710at 357.589 kb on - strand, within PGA1_c03710at 357.600 kb on + strand, within PGA1_c03710at 357.607 kb on + strand, within PGA1_c03710at 357.615 kb on - strand, within PGA1_c03710at 357.620 kb on + strand, within PGA1_c03710at 357.647 kb on + strand, within PGA1_c03710at 357.647 kb on - strand, within PGA1_c03710at 357.652 kb on + strand, within PGA1_c03710at 357.655 kb on - strand, within PGA1_c03710at 357.659 kb on + strand, within PGA1_c03710at 357.659 kb on + strand, within PGA1_c03710at 357.659 kb on + strand, within PGA1_c03710at 357.667 kb on - strand, within PGA1_c03710at 357.667 kb on - strand, within PGA1_c03710at 357.667 kb on - strand, within PGA1_c03710at 357.722 kb on - strandat 357.722 kb on - strandat 357.851 kb on + strandat 357.871 kb on + strandat 357.916 kb on - strand, within PGA1_c03720at 357.967 kb on + strand, within PGA1_c03720at 357.972 kb on + strand, within PGA1_c03720at 357.972 kb on + strand, within PGA1_c03720at 357.972 kb on + strand, within PGA1_c03720at 357.980 kb on - strand, within PGA1_c03720at 358.004 kb on - strand, within PGA1_c03720at 358.009 kb on - strand, within PGA1_c03720at 358.011 kb on + strand, within PGA1_c03720at 358.019 kb on - strand, within PGA1_c03720at 358.036 kb on + strand, within PGA1_c03720at 358.083 kb on - strand, within PGA1_c03720at 358.103 kb on + strand, within PGA1_c03720at 358.108 kb on + strand, within PGA1_c03720at 358.112 kb on - strand, within PGA1_c03720at 358.135 kb on - strand, within PGA1_c03720at 358.160 kb on + strand, within PGA1_c03720at 358.174 kb on + strand, within PGA1_c03720at 358.174 kb on + strand, within PGA1_c03720at 358.174 kb on + strand, within PGA1_c03720at 358.174 kb on + strand, within PGA1_c03720at 358.174 kb on + strand, within PGA1_c03720at 358.181 kb on + strand, within PGA1_c03720at 358.182 kb on - strand, within PGA1_c03720at 358.182 kb on - strand, within PGA1_c03720at 358.182 kb on - strand, within PGA1_c03720at 358.182 kb on - strand, within PGA1_c03720at 358.182 kb on - strand, within PGA1_c03720at 358.206 kb on + strand, within PGA1_c03720at 358.214 kb on - strand, within PGA1_c03720at 358.227 kb on + strand, within PGA1_c03720at 358.267 kb on + strand, within PGA1_c03720at 358.271 kb on - strand, within PGA1_c03720at 358.291 kb on + strand, within PGA1_c03720at 358.296 kb on + strand, within PGA1_c03720at 358.296 kb on + strand, within PGA1_c03720at 358.296 kb on + strand, within PGA1_c03720at 358.296 kb on + strand, within PGA1_c03720at 358.301 kb on + strand, within PGA1_c03720at 358.301 kb on + strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.304 kb on - strand, within PGA1_c03720at 358.307 kb on - strand, within PGA1_c03720at 358.309 kb on - strand, within PGA1_c03720at 358.334 kb on + strand, within PGA1_c03720at 358.345 kb on - strand, within PGA1_c03720at 358.355 kb on - strand, within PGA1_c03720at 358.377 kb on - strand, within PGA1_c03720at 358.387 kb on - strand, within PGA1_c03720at 358.388 kb on + strand, within PGA1_c03720at 358.388 kb on + strand, within PGA1_c03720at 358.396 kb on + strand, within PGA1_c03720at 358.398 kb on + strand, within PGA1_c03720at 358.406 kb on - strandat 358.406 kb on - strandat 358.440 kb on - strandat 358.456 kb on + strandat 358.456 kb on + strandat 358.456 kb on + strandat 358.461 kb on + strandat 358.464 kb on - strandat 358.464 kb on - strandat 358.530 kb on + strandat 358.546 kb on - strandat 358.555 kb on + strandat 358.555 kb on + strandat 358.555 kb on + strandat 358.555 kb on + strandat 358.563 kb on - strand, within PGA1_c03730at 358.568 kb on - strand, within PGA1_c03730at 358.586 kb on + strand, within PGA1_c03730at 358.589 kb on - strand, within PGA1_c03730at 358.613 kb on + strand, within PGA1_c03730at 358.623 kb on - strand, within PGA1_c03730at 358.625 kb on + strand, within PGA1_c03730at 358.625 kb on + strand, within PGA1_c03730at 358.632 kb on + strand, within PGA1_c03730at 358.633 kb on - strand, within PGA1_c03730at 358.633 kb on - strand, within PGA1_c03730at 358.633 kb on - strand, within PGA1_c03730at 358.652 kb on + strand, within PGA1_c03730at 358.665 kb on + strand, within PGA1_c03730at 358.671 kb on + strand, within PGA1_c03730at 358.671 kb on + strand, within PGA1_c03730at 358.679 kb on - strand, within PGA1_c03730at 358.679 kb on - strand, within PGA1_c03730at 358.679 kb on - strand, within PGA1_c03730at 358.763 kb on + strand, within PGA1_c03730at 358.770 kb on + strand, within PGA1_c03730at 358.778 kb on - strand, within PGA1_c03730at 358.825 kb on - strand, within PGA1_c03730at 358.834 kb on + strand, within PGA1_c03730at 358.840 kb on - strand, within PGA1_c03730at 358.842 kb on - strand, within PGA1_c03730at 358.853 kb on + strand, within PGA1_c03730at 358.866 kb on - strand, within PGA1_c03730at 358.876 kb on - strand, within PGA1_c03730at 358.881 kb on + strand, within PGA1_c03730at 358.897 kb on - strand, within PGA1_c03730at 358.943 kb on - strand, within PGA1_c03730at 358.944 kb on - strand, within PGA1_c03730at 358.944 kb on - strand, within PGA1_c03730at 358.999 kb on + strand, within PGA1_c03730at 358.999 kb on + strand, within PGA1_c03730at 358.999 kb on + strand, within PGA1_c03730at 359.017 kb on - strand, within PGA1_c03730at 359.053 kb on - strand, within PGA1_c03730at 359.065 kb on + strand, within PGA1_c03730at 359.065 kb on + strand, within PGA1_c03730at 359.070 kb on - strand, within PGA1_c03730at 359.073 kb on - strand, within PGA1_c03730at 359.086 kb on + strand, within PGA1_c03730at 359.094 kb on - strand, within PGA1_c03730at 359.094 kb on - strand, within PGA1_c03730at 359.106 kb on - strand, within PGA1_c03730at 359.139 kb on - strandat 359.159 kb on - strandat 359.161 kb on + strandat 359.161 kb on + strandat 359.161 kb on + strandat 359.169 kb on - strandat 359.169 kb on - strandat 359.169 kb on - strandat 359.203 kb on - strandat 359.758 kb on + strandat 360.126 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml
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357,495 - PGA1_c03710 0.70 +0.5
357,500 + PGA1_c03710 0.70 -1.2
357,505 + PGA1_c03710 0.71 -0.8
357,505 + PGA1_c03710 0.71 +0.8
357,505 + PGA1_c03710 0.71 +0.7
357,505 + PGA1_c03710 0.71 +0.7
357,505 + PGA1_c03710 0.71 +0.6
357,505 + PGA1_c03710 0.71 -1.0
357,505 + PGA1_c03710 0.71 -1.0
357,505 + PGA1_c03710 0.71 +0.6
357,513 - PGA1_c03710 0.71 +0.7
357,513 - PGA1_c03710 0.71 -0.7
357,521 - PGA1_c03710 0.72 -1.3
357,533 - PGA1_c03710 0.73 -0.3
357,589 - PGA1_c03710 0.79 +2.2
357,600 + PGA1_c03710 0.80 +0.3
357,607 + PGA1_c03710 0.80 -1.4
357,615 - PGA1_c03710 0.81 +0.5
357,620 + PGA1_c03710 0.82 -0.7
357,647 + PGA1_c03710 0.84 +1.4
357,647 - PGA1_c03710 0.84 -1.3
357,652 + PGA1_c03710 0.85 -0.0
357,655 - PGA1_c03710 0.85 -0.6
357,659 + PGA1_c03710 0.85 +0.0
357,659 + PGA1_c03710 0.85 -0.7
357,659 + PGA1_c03710 0.85 -0.5
357,667 - PGA1_c03710 0.86 +0.2
357,667 - PGA1_c03710 0.86 -0.2
357,667 - PGA1_c03710 0.86 +0.8
357,722 - +1.0
357,722 - +0.7
357,851 + -1.3
357,871 + -0.9
357,916 - PGA1_c03720 0.13 +0.2
357,967 + PGA1_c03720 0.21 -1.8
357,972 + PGA1_c03720 0.22 -0.1
357,972 + PGA1_c03720 0.22 +1.3
357,972 + PGA1_c03720 0.22 -1.3
357,980 - PGA1_c03720 0.23 +0.1
358,004 - PGA1_c03720 0.27 -1.9
358,009 - PGA1_c03720 0.28 -0.9
358,011 + PGA1_c03720 0.28 +0.5
358,019 - PGA1_c03720 0.30 -2.7
358,036 + PGA1_c03720 0.32 +0.9
358,083 - PGA1_c03720 0.40 +1.5
358,103 + PGA1_c03720 0.43 -0.7
358,108 + PGA1_c03720 0.44 -2.4
358,112 - PGA1_c03720 0.44 +0.4
358,135 - PGA1_c03720 0.48 -0.7
358,160 + PGA1_c03720 0.52 +0.7
358,174 + PGA1_c03720 0.54 -0.2
358,174 + PGA1_c03720 0.54 -0.5
358,174 + PGA1_c03720 0.54 -1.3
358,174 + PGA1_c03720 0.54 +0.4
358,174 + PGA1_c03720 0.54 -1.0
358,181 + PGA1_c03720 0.55 -1.4
358,182 - PGA1_c03720 0.56 +0.7
358,182 - PGA1_c03720 0.56 +0.5
358,182 - PGA1_c03720 0.56 +0.7
358,182 - PGA1_c03720 0.56 +0.3
358,182 - PGA1_c03720 0.56 -0.2
358,206 + PGA1_c03720 0.59 +0.7
358,214 - PGA1_c03720 0.61 -0.0
358,227 + PGA1_c03720 0.63 -0.3
358,267 + PGA1_c03720 0.69 +0.5
358,271 - PGA1_c03720 0.70 +0.4
358,291 + PGA1_c03720 0.73 +1.3
358,296 + PGA1_c03720 0.74 +0.6
358,296 + PGA1_c03720 0.74 +0.3
358,296 + PGA1_c03720 0.74 +1.2
358,296 + PGA1_c03720 0.74 +0.1
358,301 + PGA1_c03720 0.74 +0.6
358,301 + PGA1_c03720 0.74 +1.0
358,304 - PGA1_c03720 0.75 +1.6
358,304 - PGA1_c03720 0.75 +1.2
358,304 - PGA1_c03720 0.75 -1.2
358,304 - PGA1_c03720 0.75 -0.9
358,304 - PGA1_c03720 0.75 +0.7
358,304 - PGA1_c03720 0.75 -1.0
358,304 - PGA1_c03720 0.75 +0.0
358,304 - PGA1_c03720 0.75 -1.3
358,304 - PGA1_c03720 0.75 +0.5
358,304 - PGA1_c03720 0.75 +1.2
358,304 - PGA1_c03720 0.75 -1.2
358,304 - PGA1_c03720 0.75 -0.0
358,304 - PGA1_c03720 0.75 +0.5
358,304 - PGA1_c03720 0.75 +0.4
358,307 - PGA1_c03720 0.75 -1.7
358,309 - PGA1_c03720 0.76 -1.5
358,334 + PGA1_c03720 0.80 +1.3
358,345 - PGA1_c03720 0.81 -2.5
358,355 - PGA1_c03720 0.83 -2.0
358,377 - PGA1_c03720 0.87 -0.7
358,387 - PGA1_c03720 0.88 -0.6
358,388 + PGA1_c03720 0.88 +1.4
358,388 + PGA1_c03720 0.88 -0.1
358,396 + PGA1_c03720 0.90 -0.9
358,398 + PGA1_c03720 0.90 -0.8
358,406 - +0.2
358,406 - -0.4
358,440 - +1.6
358,456 + -0.3
358,456 + -1.4
358,456 + +0.1
358,461 + -2.4
358,464 - -1.6
358,464 - -0.8
358,530 + -0.3
358,546 - -0.4
358,555 + -3.1
358,555 + -0.3
358,555 + -0.5
358,555 + +0.7
358,563 - PGA1_c03730 0.10 -0.5
358,568 - PGA1_c03730 0.11 -2.6
358,586 + PGA1_c03730 0.13 -0.6
358,589 - PGA1_c03730 0.14 -1.8
358,613 + PGA1_c03730 0.17 +2.0
358,623 - PGA1_c03730 0.19 -1.2
358,625 + PGA1_c03730 0.19 -0.6
358,625 + PGA1_c03730 0.19 -0.6
358,632 + PGA1_c03730 0.20 -1.6
358,633 - PGA1_c03730 0.20 +1.4
358,633 - PGA1_c03730 0.20 -0.2
358,633 - PGA1_c03730 0.20 +0.8
358,652 + PGA1_c03730 0.23 -0.7
358,665 + PGA1_c03730 0.25 -0.2
358,671 + PGA1_c03730 0.26 -0.4
358,671 + PGA1_c03730 0.26 -0.8
358,679 - PGA1_c03730 0.27 -1.9
358,679 - PGA1_c03730 0.27 +0.3
358,679 - PGA1_c03730 0.27 +0.9
358,763 + PGA1_c03730 0.39 -1.9
358,770 + PGA1_c03730 0.40 -0.7
358,778 - PGA1_c03730 0.41 -0.2
358,825 - PGA1_c03730 0.48 -1.2
358,834 + PGA1_c03730 0.49 +1.0
358,840 - PGA1_c03730 0.50 +0.4
358,842 - PGA1_c03730 0.50 -0.3
358,853 + PGA1_c03730 0.52 -1.3
358,866 - PGA1_c03730 0.54 -0.8
358,876 - PGA1_c03730 0.55 -1.9
358,881 + PGA1_c03730 0.56 -0.6
358,897 - PGA1_c03730 0.58 +0.3
358,943 - PGA1_c03730 0.65 -1.2
358,944 - PGA1_c03730 0.65 +1.5
358,944 - PGA1_c03730 0.65 +0.5
358,999 + PGA1_c03730 0.73 +0.2
358,999 + PGA1_c03730 0.73 -0.6
358,999 + PGA1_c03730 0.73 -0.3
359,017 - PGA1_c03730 0.76 -0.1
359,053 - PGA1_c03730 0.81 -2.8
359,065 + PGA1_c03730 0.83 -1.0
359,065 + PGA1_c03730 0.83 -1.5
359,070 - PGA1_c03730 0.83 +0.7
359,073 - PGA1_c03730 0.84 +0.3
359,086 + PGA1_c03730 0.86 +0.3
359,094 - PGA1_c03730 0.87 +0.5
359,094 - PGA1_c03730 0.87 +1.2
359,106 - PGA1_c03730 0.89 -1.1
359,139 - -2.6
359,159 - -0.7
359,161 + +1.5
359,161 + +0.5
359,161 + +0.7
359,169 - +1.4
359,169 - -0.2
359,169 - -0.4
359,203 - +1.2
359,758 + -0.3
360,126 + -3.4

Or see this region's nucleotide sequence