Experiment: Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0034 and Psest_0035 are separated by 5 nucleotides Psest_0035 and Psest_0036 overlap by 22 nucleotides
Psest_0034: Psest_0034 - Outer membrane receptor proteins, mostly Fe transport, at 33,359 to 35,407
_0034
Psest_0035: Psest_0035 - hypothetical protein, at 35,413 to 36,939
_0035
Psest_0036: Psest_0036 - Predicted membrane protein, at 36,918 to 38,621
_0036
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 34.413 kb on - strand, within Psest_0034 at 34.413 kb on - strand, within Psest_0034 at 34.527 kb on - strand, within Psest_0034 at 34.527 kb on - strand, within Psest_0034 at 34.535 kb on + strand, within Psest_0034 at 34.536 kb on - strand, within Psest_0034 at 34.544 kb on + strand, within Psest_0034 at 34.545 kb on - strand, within Psest_0034 at 34.649 kb on + strand, within Psest_0034 at 34.700 kb on + strand, within Psest_0034 at 34.700 kb on + strand, within Psest_0034 at 34.700 kb on + strand, within Psest_0034 at 34.700 kb on + strand, within Psest_0034 at 34.701 kb on - strand, within Psest_0034 at 34.701 kb on - strand, within Psest_0034 at 34.701 kb on - strand, within Psest_0034 at 34.701 kb on - strand, within Psest_0034 at 34.701 kb on - strand, within Psest_0034 at 34.709 kb on - strand, within Psest_0034 at 34.727 kb on + strand, within Psest_0034 at 34.775 kb on + strand, within Psest_0034 at 34.776 kb on - strand, within Psest_0034 at 35.118 kb on - strand, within Psest_0034 at 35.118 kb on - strand, within Psest_0034 at 35.135 kb on + strand, within Psest_0034 at 35.136 kb on - strand, within Psest_0034 at 35.136 kb on - strand, within Psest_0034 at 35.189 kb on + strand, within Psest_0034 at 35.190 kb on - strand, within Psest_0034 at 35.192 kb on + strand, within Psest_0034 at 35.193 kb on - strand, within Psest_0034 at 35.193 kb on - strand, within Psest_0034 at 35.222 kb on + strand at 35.223 kb on - strand at 35.223 kb on - strand at 35.232 kb on - strand at 35.259 kb on - strand at 35.318 kb on + strand at 35.318 kb on + strand at 35.318 kb on + strand at 35.318 kb on + strand at 35.319 kb on - strand at 35.324 kb on + strand at 35.324 kb on + strand at 35.324 kb on + strand at 35.325 kb on - strand at 35.325 kb on - strand at 35.325 kb on - strand at 35.325 kb on - strand at 35.325 kb on - strand at 35.325 kb on - strand at 35.325 kb on - strand at 35.381 kb on + strand at 35.381 kb on + strand at 35.381 kb on + strand at 35.381 kb on + strand at 35.382 kb on - strand at 35.382 kb on - strand at 35.382 kb on - strand at 35.382 kb on - strand at 35.382 kb on - strand at 35.423 kb on - strand at 35.428 kb on + strand at 35.429 kb on - strand at 35.899 kb on + strand, within Psest_0035 at 35.899 kb on + strand, within Psest_0035 at 35.899 kb on + strand, within Psest_0035 at 35.899 kb on + strand, within Psest_0035 at 35.899 kb on + strand, within Psest_0035 at 35.900 kb on - strand, within Psest_0035 at 35.900 kb on - strand, within Psest_0035 at 35.900 kb on - strand, within Psest_0035 at 36.040 kb on + strand, within Psest_0035 at 36.041 kb on - strand, within Psest_0035 at 36.041 kb on - strand, within Psest_0035 at 36.303 kb on - strand, within Psest_0035 at 36.303 kb on - strand, within Psest_0035 at 36.410 kb on - strand, within Psest_0035 at 36.574 kb on + strand, within Psest_0035 at 36.575 kb on - strand, within Psest_0035 at 36.575 kb on - strand, within Psest_0035 at 36.575 kb on - strand, within Psest_0035 at 36.578 kb on - strand, within Psest_0035 at 36.601 kb on + strand, within Psest_0035 at 36.601 kb on + strand, within Psest_0035 at 36.601 kb on + strand, within Psest_0035 at 36.602 kb on - strand, within Psest_0035 at 37.064 kb on - strand at 37.064 kb on - strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.079 kb on - strand at 37.079 kb on - strand at 37.262 kb on - strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.271 kb on - strand, within Psest_0036 at 37.271 kb on - strand, within Psest_0036 at 37.271 kb on - strand, within Psest_0036 at 37.531 kb on + strand, within Psest_0036 at 37.531 kb on + strand, within Psest_0036 at 37.532 kb on - strand, within Psest_0036 at 37.532 kb on - strand, within Psest_0036 at 37.532 kb on - strand, within Psest_0036 at 37.571 kb on - strand, within Psest_0036 at 37.576 kb on + strand, within Psest_0036 at 37.577 kb on - strand, within Psest_0036 at 37.615 kb on + strand, within Psest_0036 at 37.615 kb on + strand, within Psest_0036 at 37.654 kb on + strand, within Psest_0036 at 37.654 kb on + strand, within Psest_0036 at 37.654 kb on + strand, within Psest_0036 at 37.655 kb on - strand, within Psest_0036 at 37.655 kb on - strand, within Psest_0036 at 37.660 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml remove 34,413 - Psest_0034 0.51 -1.4 34,413 - Psest_0034 0.51 +0.6 34,527 - Psest_0034 0.57 +1.2 34,527 - Psest_0034 0.57 +1.5 34,535 + Psest_0034 0.57 +1.8 34,536 - Psest_0034 0.57 +0.8 34,544 + Psest_0034 0.58 -2.0 34,545 - Psest_0034 0.58 +3.7 34,649 + Psest_0034 0.63 +0.4 34,700 + Psest_0034 0.65 +0.4 34,700 + Psest_0034 0.65 +1.0 34,700 + Psest_0034 0.65 +1.7 34,700 + Psest_0034 0.65 -1.2 34,701 - Psest_0034 0.65 -1.0 34,701 - Psest_0034 0.65 +0.7 34,701 - Psest_0034 0.65 +1.4 34,701 - Psest_0034 0.65 +1.5 34,701 - Psest_0034 0.65 -0.2 34,709 - Psest_0034 0.66 +0.4 34,727 + Psest_0034 0.67 -0.6 34,775 + Psest_0034 0.69 -0.2 34,776 - Psest_0034 0.69 +1.4 35,118 - Psest_0034 0.86 -0.2 35,118 - Psest_0034 0.86 +0.0 35,135 + Psest_0034 0.87 -0.2 35,136 - Psest_0034 0.87 +0.0 35,136 - Psest_0034 0.87 +1.3 35,189 + Psest_0034 0.89 +1.4 35,190 - Psest_0034 0.89 +1.6 35,192 + Psest_0034 0.89 +1.4 35,193 - Psest_0034 0.90 +1.9 35,193 - Psest_0034 0.90 +1.4 35,222 + +1.8 35,223 - +0.4 35,223 - +1.6 35,232 - +0.8 35,259 - -0.4 35,318 + +0.6 35,318 + -1.2 35,318 + +0.4 35,318 + +1.4 35,319 - +1.4 35,324 + +0.4 35,324 + -0.2 35,324 + +1.4 35,325 - -1.0 35,325 - -1.0 35,325 - -0.6 35,325 - +1.8 35,325 - +2.1 35,325 - +2.8 35,325 - -0.1 35,381 + +1.0 35,381 + +0.4 35,381 + +2.4 35,381 + +0.4 35,382 - +2.7 35,382 - -1.0 35,382 - +0.8 35,382 - +1.7 35,382 - +0.4 35,423 - +1.2 35,428 + +2.7 35,429 - +1.6 35,899 + Psest_0035 0.32 +0.3 35,899 + Psest_0035 0.32 +1.8 35,899 + Psest_0035 0.32 -0.2 35,899 + Psest_0035 0.32 +1.2 35,899 + Psest_0035 0.32 +0.7 35,900 - Psest_0035 0.32 +1.4 35,900 - Psest_0035 0.32 -0.6 35,900 - Psest_0035 0.32 -0.2 36,040 + Psest_0035 0.41 +1.4 36,041 - Psest_0035 0.41 +0.8 36,041 - Psest_0035 0.41 -0.2 36,303 - Psest_0035 0.58 +0.6 36,303 - Psest_0035 0.58 +1.2 36,410 - Psest_0035 0.65 -2.0 36,574 + Psest_0035 0.76 +1.4 36,575 - Psest_0035 0.76 +1.4 36,575 - Psest_0035 0.76 +0.4 36,575 - Psest_0035 0.76 +0.4 36,578 - Psest_0035 0.76 +0.4 36,601 + Psest_0035 0.78 +3.1 36,601 + Psest_0035 0.78 -0.0 36,601 + Psest_0035 0.78 -0.2 36,602 - Psest_0035 0.78 -1.0 37,064 - +0.0 37,064 - +1.1 37,078 + +0.1 37,078 + +0.4 37,078 + +0.6 37,078 + +0.1 37,078 + -0.3 37,078 + +0.0 37,078 + +1.0 37,078 + +0.2 37,079 - +1.4 37,079 - -1.0 37,262 - Psest_0036 0.20 +0.4 37,270 + Psest_0036 0.21 -0.6 37,270 + Psest_0036 0.21 +1.6 37,270 + Psest_0036 0.21 +1.2 37,270 + Psest_0036 0.21 -1.4 37,270 + Psest_0036 0.21 +0.4 37,270 + Psest_0036 0.21 -0.4 37,271 - Psest_0036 0.21 +1.4 37,271 - Psest_0036 0.21 +0.8 37,271 - Psest_0036 0.21 +0.4 37,531 + Psest_0036 0.36 -0.6 37,531 + Psest_0036 0.36 +1.4 37,532 - Psest_0036 0.36 +1.4 37,532 - Psest_0036 0.36 +1.1 37,532 - Psest_0036 0.36 +0.4 37,571 - Psest_0036 0.38 +1.0 37,576 + Psest_0036 0.39 -0.4 37,577 - Psest_0036 0.39 +0.4 37,615 + Psest_0036 0.41 -0.0 37,615 + Psest_0036 0.41 +0.0 37,654 + Psest_0036 0.43 -0.8 37,654 + Psest_0036 0.43 -0.3 37,654 + Psest_0036 0.43 -1.2 37,655 - Psest_0036 0.43 +0.9 37,655 - Psest_0036 0.43 +2.7 37,660 + Psest_0036 0.44 -1.4 37,855 + Psest_0036 0.55 -0.6 37,855 + Psest_0036 0.55 +0.4 37,855 + Psest_0036 0.55 +0.0
Or see this region's nucleotide sequence