Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35150 and PGA1_c35160 overlap by 4 nucleotides PGA1_c35160 and PGA1_c35170 overlap by 8 nucleotides PGA1_c35170 and PGA1_c35180 are separated by 75 nucleotides PGA1_c35180 and PGA1_c35190 are separated by 78 nucleotides
PGA1_c35150: PGA1_c35150 - shikimate dehydrogenase AroE, at 3,687,966 to 3,688,799
_c35150
PGA1_c35160: PGA1_c35160 - dephospho-CoA kinase CoaE, at 3,688,796 to 3,689,389
_c35160
PGA1_c35170: PGA1_c35170 - DNA polymerase III subunit epsilon, at 3,689,382 to 3,690,119
_c35170
PGA1_c35180: PGA1_c35180 - protein-export protein SecB, at 3,690,195 to 3,690,689
_c35180
PGA1_c35190: PGA1_c35190 - putative protein FxsA, at 3,690,768 to 3,691,274
_c35190
Position (kb)
3689
3690
3691 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3688.793 kb on + strand at 3688.793 kb on + strand at 3688.793 kb on + strand at 3689.458 kb on + strand, within PGA1_c35170 at 3689.505 kb on + strand, within PGA1_c35170 at 3689.568 kb on - strand, within PGA1_c35170 at 3689.724 kb on - strand, within PGA1_c35170 at 3689.989 kb on + strand, within PGA1_c35170 at 3690.007 kb on + strand, within PGA1_c35170 at 3690.093 kb on + strand at 3690.096 kb on + strand at 3690.096 kb on + strand at 3690.096 kb on + strand at 3690.098 kb on + strand at 3690.104 kb on - strand at 3690.161 kb on - strand at 3690.186 kb on + strand at 3690.186 kb on + strand at 3690.186 kb on + strand at 3690.194 kb on - strand at 3690.194 kb on - strand at 3690.194 kb on - strand at 3690.204 kb on + strand at 3690.225 kb on - strand at 3690.225 kb on - strand at 3690.225 kb on - strand at 3690.225 kb on - strand at 3690.766 kb on + strand at 3690.771 kb on + strand at 3690.779 kb on + strand at 3690.860 kb on - strand, within PGA1_c35190 at 3690.860 kb on - strand, within PGA1_c35190 at 3690.880 kb on + strand, within PGA1_c35190 at 3690.923 kb on + strand, within PGA1_c35190 at 3690.987 kb on + strand, within PGA1_c35190 at 3690.987 kb on + strand, within PGA1_c35190 at 3690.995 kb on - strand, within PGA1_c35190 at 3691.029 kb on - strand, within PGA1_c35190 at 3691.036 kb on - strand, within PGA1_c35190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 3,688,793 + -1.5 3,688,793 + +0.6 3,688,793 + +1.3 3,689,458 + PGA1_c35170 0.10 -0.5 3,689,505 + PGA1_c35170 0.17 -0.2 3,689,568 - PGA1_c35170 0.25 +1.3 3,689,724 - PGA1_c35170 0.46 +0.5 3,689,989 + PGA1_c35170 0.82 +0.6 3,690,007 + PGA1_c35170 0.85 -0.9 3,690,093 + -0.3 3,690,096 + -2.0 3,690,096 + -0.8 3,690,096 + +0.9 3,690,098 + +0.7 3,690,104 - -0.7 3,690,161 - -0.6 3,690,186 + +0.3 3,690,186 + +1.7 3,690,186 + -0.3 3,690,194 - +2.0 3,690,194 - +1.2 3,690,194 - +2.0 3,690,204 + +1.4 3,690,225 - +0.9 3,690,225 - +1.4 3,690,225 - +2.8 3,690,225 - +0.1 3,690,766 + -1.4 3,690,771 + -0.3 3,690,779 + -1.7 3,690,860 - PGA1_c35190 0.18 -1.9 3,690,860 - PGA1_c35190 0.18 -3.3 3,690,880 + PGA1_c35190 0.22 -2.1 3,690,923 + PGA1_c35190 0.31 -1.9 3,690,987 + PGA1_c35190 0.43 -1.8 3,690,987 + PGA1_c35190 0.43 -1.2 3,690,995 - PGA1_c35190 0.45 -2.8 3,691,029 - PGA1_c35190 0.51 -1.2 3,691,036 - PGA1_c35190 0.53 -1.1
Or see this region's nucleotide sequence