Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03480 and PGA1_c03490 are separated by 61 nucleotides PGA1_c03490 and PGA1_c03500 are separated by 218 nucleotides PGA1_c03500 and PGA1_c03510 overlap by 4 nucleotides
PGA1_c03480: PGA1_c03480 - hypothetical protein, at 334,018 to 336,831
_c03480
PGA1_c03490: PGA1_c03490 - hypothetical protein, at 336,893 to 337,774
_c03490
PGA1_c03500: PGA1_c03500 - putative cell division ATP-binding protein FtsE, at 337,993 to 338,670
_c03500
PGA1_c03510: PGA1_c03510 - protein insertion permease FtsX-like protein, at 338,667 to 339,566
_c03510
Position (kb) 336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 335.899 kb on + strand, within PGA1_c03480 at 336.022 kb on - strand, within PGA1_c03480 at 336.029 kb on + strand, within PGA1_c03480 at 336.046 kb on + strand, within PGA1_c03480 at 336.046 kb on + strand, within PGA1_c03480 at 336.046 kb on + strand, within PGA1_c03480 at 336.046 kb on + strand, within PGA1_c03480 at 336.046 kb on + strand, within PGA1_c03480 at 336.059 kb on - strand, within PGA1_c03480 at 336.061 kb on + strand, within PGA1_c03480 at 336.090 kb on + strand, within PGA1_c03480 at 336.098 kb on - strand, within PGA1_c03480 at 336.098 kb on - strand, within PGA1_c03480 at 336.294 kb on - strand, within PGA1_c03480 at 336.361 kb on + strand, within PGA1_c03480 at 336.361 kb on + strand, within PGA1_c03480 at 336.362 kb on + strand, within PGA1_c03480 at 336.376 kb on - strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.387 kb on + strand, within PGA1_c03480 at 336.395 kb on - strand, within PGA1_c03480 at 336.402 kb on - strand, within PGA1_c03480 at 336.444 kb on + strand, within PGA1_c03480 at 336.486 kb on + strand, within PGA1_c03480 at 336.550 kb on + strand at 336.550 kb on + strand at 336.608 kb on - strand at 336.618 kb on + strand at 336.715 kb on + strand at 336.715 kb on + strand at 336.715 kb on + strand at 336.715 kb on + strand at 336.779 kb on + strand at 336.811 kb on - strand at 336.832 kb on - strand at 336.869 kb on + strand at 336.904 kb on + strand at 336.912 kb on - strand at 336.912 kb on - strand at 336.912 kb on - strand at 336.978 kb on + strand at 336.984 kb on + strand, within PGA1_c03490 at 336.992 kb on - strand, within PGA1_c03490 at 337.026 kb on + strand, within PGA1_c03490 at 337.194 kb on - strand, within PGA1_c03490 at 337.333 kb on - strand, within PGA1_c03490 at 337.382 kb on + strand, within PGA1_c03490 at 337.719 kb on - strand at 337.776 kb on + strand at 337.783 kb on - strand at 337.876 kb on + strand at 337.893 kb on + strand at 337.893 kb on + strand at 337.901 kb on - strand at 337.901 kb on - strand at 337.914 kb on + strand at 337.922 kb on - strand at 337.928 kb on - strand at 337.937 kb on + strand at 338.043 kb on - strand at 338.097 kb on + strand, within PGA1_c03500 at 338.268 kb on + strand, within PGA1_c03500 at 338.295 kb on + strand, within PGA1_c03500 at 338.309 kb on - strand, within PGA1_c03500 at 338.570 kb on + strand, within PGA1_c03500 at 338.589 kb on - strand, within PGA1_c03500 at 338.594 kb on - strand, within PGA1_c03500 at 338.594 kb on - strand, within PGA1_c03500 at 338.613 kb on + strand at 338.613 kb on + strand at 338.652 kb on + strand at 338.652 kb on + strand at 338.676 kb on + strand at 338.711 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 335,899 + PGA1_c03480 0.67 -2.0 336,022 - PGA1_c03480 0.71 +0.4 336,029 + PGA1_c03480 0.71 -1.4 336,046 + PGA1_c03480 0.72 -0.4 336,046 + PGA1_c03480 0.72 -1.2 336,046 + PGA1_c03480 0.72 +0.6 336,046 + PGA1_c03480 0.72 -2.1 336,046 + PGA1_c03480 0.72 -0.5 336,059 - PGA1_c03480 0.73 -1.0 336,061 + PGA1_c03480 0.73 +1.8 336,090 + PGA1_c03480 0.74 +2.9 336,098 - PGA1_c03480 0.74 -0.6 336,098 - PGA1_c03480 0.74 -0.5 336,294 - PGA1_c03480 0.81 -0.7 336,361 + PGA1_c03480 0.83 +0.0 336,361 + PGA1_c03480 0.83 +0.5 336,362 + PGA1_c03480 0.83 +1.8 336,376 - PGA1_c03480 0.84 -0.6 336,387 + PGA1_c03480 0.84 +0.5 336,387 + PGA1_c03480 0.84 +0.0 336,387 + PGA1_c03480 0.84 -2.9 336,387 + PGA1_c03480 0.84 -1.2 336,387 + PGA1_c03480 0.84 +0.8 336,387 + PGA1_c03480 0.84 +2.2 336,387 + PGA1_c03480 0.84 +1.4 336,395 - PGA1_c03480 0.84 -0.5 336,402 - PGA1_c03480 0.85 +0.5 336,444 + PGA1_c03480 0.86 -0.2 336,486 + PGA1_c03480 0.88 -0.2 336,550 + -1.4 336,550 + -0.0 336,608 - +1.5 336,618 + +0.9 336,715 + -0.2 336,715 + -0.1 336,715 + +0.2 336,715 + +0.3 336,779 + +0.5 336,811 - +0.2 336,832 - +0.4 336,869 + -1.5 336,904 + -0.6 336,912 - +0.8 336,912 - -0.6 336,912 - +1.1 336,978 + -2.3 336,984 + PGA1_c03490 0.10 -1.8 336,992 - PGA1_c03490 0.11 -2.8 337,026 + PGA1_c03490 0.15 -2.8 337,194 - PGA1_c03490 0.34 -0.8 337,333 - PGA1_c03490 0.50 -1.6 337,382 + PGA1_c03490 0.55 +0.2 337,719 - -0.8 337,776 + -1.2 337,783 - -0.7 337,876 + +1.0 337,893 + -0.0 337,893 + +1.2 337,901 - +0.8 337,901 - +0.4 337,914 + +2.4 337,922 - +0.9 337,928 - -0.9 337,937 + -0.2 338,043 - -2.0 338,097 + PGA1_c03500 0.15 +1.8 338,268 + PGA1_c03500 0.41 -1.6 338,295 + PGA1_c03500 0.45 +1.0 338,309 - PGA1_c03500 0.47 -1.4 338,570 + PGA1_c03500 0.85 -0.6 338,589 - PGA1_c03500 0.88 +1.2 338,594 - PGA1_c03500 0.89 -0.2 338,594 - PGA1_c03500 0.89 -2.4 338,613 + -0.2 338,613 + +1.0 338,652 + -2.2 338,652 + -1.4 338,676 + -1.2 338,711 + -1.4
Or see this region's nucleotide sequence