Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c31910 and PGA1_c31920 are separated by 133 nucleotides PGA1_c31920 and PGA1_c31930 are separated by 74 nucleotides PGA1_c31930 and PGA1_c31940 overlap by 4 nucleotides PGA1_c31940 and PGA1_c31950 overlap by 28 nucleotides
PGA1_c31910: PGA1_c31910 - YGGT family., at 3,346,452 to 3,346,739
_c31910
PGA1_c31920: PGA1_c31920 - thioeseterase-like protein, at 3,346,873 to 3,347,460
_c31920
PGA1_c31930: PGA1_c31930 - putative transporter, MFS family, at 3,347,535 to 3,348,899
_c31930
PGA1_c31940: PGA1_c31940 - penicillin-insensitive murein endopeptidase MepA, at 3,348,896 to 3,349,819
_c31940
PGA1_c31950: PGA1_c31950 - Uncharacterized protein conserved in bacteria, at 3,349,792 to 3,350,721
_c31950
Position (kb) 3347
3348
3349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 3346.570 kb on + strand, within PGA1_c31910 at 3346.593 kb on + strand, within PGA1_c31910 at 3346.598 kb on + strand, within PGA1_c31910 at 3346.598 kb on + strand, within PGA1_c31910 at 3346.601 kb on - strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.603 kb on + strand, within PGA1_c31910 at 3346.606 kb on - strand, within PGA1_c31910 at 3346.611 kb on - strand, within PGA1_c31910 at 3346.611 kb on - strand, within PGA1_c31910 at 3346.611 kb on - strand, within PGA1_c31910 at 3346.611 kb on - strand, within PGA1_c31910 at 3346.611 kb on - strand, within PGA1_c31910 at 3346.611 kb on - strand, within PGA1_c31910 at 3346.611 kb on - strand, within PGA1_c31910 at 3346.728 kb on - strand at 3346.773 kb on - strand at 3346.803 kb on + strand at 3346.823 kb on - strand at 3346.853 kb on + strand at 3346.853 kb on + strand at 3346.853 kb on + strand at 3346.855 kb on + strand at 3346.861 kb on - strand at 3346.861 kb on - strand at 3346.863 kb on - strand at 3346.893 kb on + strand at 3346.994 kb on - strand, within PGA1_c31920 at 3346.996 kb on + strand, within PGA1_c31920 at 3347.004 kb on - strand, within PGA1_c31920 at 3347.004 kb on - strand, within PGA1_c31920 at 3347.029 kb on + strand, within PGA1_c31920 at 3347.042 kb on - strand, within PGA1_c31920 at 3347.075 kb on - strand, within PGA1_c31920 at 3347.095 kb on + strand, within PGA1_c31920 at 3347.103 kb on - strand, within PGA1_c31920 at 3347.114 kb on + strand, within PGA1_c31920 at 3347.166 kb on - strand, within PGA1_c31920 at 3347.176 kb on - strand, within PGA1_c31920 at 3347.178 kb on + strand, within PGA1_c31920 at 3347.201 kb on + strand, within PGA1_c31920 at 3347.363 kb on - strand, within PGA1_c31920 at 3347.460 kb on + strand at 3347.460 kb on + strand at 3347.463 kb on - strand at 3347.480 kb on + strand at 3347.518 kb on - strand at 3347.569 kb on - strand at 3347.610 kb on + strand at 3347.610 kb on - strand at 3347.669 kb on + strand at 3347.678 kb on - strand, within PGA1_c31930 at 3347.679 kb on - strand, within PGA1_c31930 at 3347.685 kb on + strand, within PGA1_c31930 at 3347.705 kb on + strand, within PGA1_c31930 at 3347.705 kb on + strand, within PGA1_c31930 at 3347.705 kb on + strand, within PGA1_c31930 at 3347.705 kb on + strand, within PGA1_c31930 at 3347.705 kb on + strand, within PGA1_c31930 at 3347.713 kb on - strand, within PGA1_c31930 at 3347.713 kb on - strand, within PGA1_c31930 at 3347.727 kb on + strand, within PGA1_c31930 at 3347.727 kb on - strand, within PGA1_c31930 at 3347.737 kb on + strand, within PGA1_c31930 at 3347.750 kb on - strand, within PGA1_c31930 at 3347.878 kb on + strand, within PGA1_c31930 at 3347.886 kb on - strand, within PGA1_c31930 at 3347.890 kb on + strand, within PGA1_c31930 at 3347.891 kb on - strand, within PGA1_c31930 at 3347.971 kb on - strand, within PGA1_c31930 at 3348.075 kb on - strand, within PGA1_c31930 at 3348.085 kb on + strand, within PGA1_c31930 at 3348.124 kb on + strand, within PGA1_c31930 at 3348.143 kb on + strand, within PGA1_c31930 at 3348.145 kb on + strand, within PGA1_c31930 at 3348.153 kb on - strand, within PGA1_c31930 at 3348.156 kb on + strand at 3348.230 kb on - strand, within PGA1_c31930 at 3348.251 kb on - strand, within PGA1_c31930 at 3348.265 kb on + strand, within PGA1_c31930 at 3348.267 kb on + strand, within PGA1_c31930 at 3348.275 kb on - strand, within PGA1_c31930 at 3348.332 kb on + strand, within PGA1_c31930 at 3348.335 kb on + strand, within PGA1_c31930 at 3348.338 kb on - strand, within PGA1_c31930 at 3348.340 kb on + strand, within PGA1_c31930 at 3348.390 kb on + strand, within PGA1_c31930 at 3348.390 kb on + strand, within PGA1_c31930 at 3348.390 kb on + strand, within PGA1_c31930 at 3348.398 kb on - strand, within PGA1_c31930 at 3348.398 kb on - strand, within PGA1_c31930 at 3348.398 kb on - strand, within PGA1_c31930 at 3348.403 kb on - strand, within PGA1_c31930 at 3348.463 kb on - strand, within PGA1_c31930 at 3348.463 kb on - strand, within PGA1_c31930 at 3348.471 kb on - strand, within PGA1_c31930 at 3348.519 kb on + strand, within PGA1_c31930 at 3348.557 kb on - strand, within PGA1_c31930 at 3348.580 kb on - strand, within PGA1_c31930 at 3348.605 kb on - strand, within PGA1_c31930 at 3348.606 kb on - strand, within PGA1_c31930 at 3348.606 kb on - strand, within PGA1_c31930 at 3348.608 kb on + strand, within PGA1_c31930 at 3348.639 kb on - strand, within PGA1_c31930 at 3348.644 kb on - strand, within PGA1_c31930 at 3348.644 kb on - strand, within PGA1_c31930 at 3348.682 kb on + strand, within PGA1_c31930 at 3348.682 kb on + strand, within PGA1_c31930 at 3348.682 kb on + strand, within PGA1_c31930 at 3348.682 kb on + strand, within PGA1_c31930 at 3348.682 kb on + strand, within PGA1_c31930 at 3348.682 kb on + strand, within PGA1_c31930 at 3348.690 kb on - strand, within PGA1_c31930 at 3348.690 kb on - strand, within PGA1_c31930 at 3348.690 kb on - strand, within PGA1_c31930 at 3348.692 kb on + strand, within PGA1_c31930 at 3348.723 kb on - strand, within PGA1_c31930 at 3348.731 kb on + strand, within PGA1_c31930 at 3348.732 kb on - strand, within PGA1_c31930 at 3348.741 kb on + strand, within PGA1_c31930 at 3348.749 kb on - strand, within PGA1_c31930 at 3348.765 kb on - strand at 3348.800 kb on + strand at 3348.808 kb on + strand at 3348.808 kb on - strand at 3348.869 kb on - strand at 3348.874 kb on - strand at 3348.874 kb on - strand at 3348.877 kb on + strand at 3348.880 kb on - strand at 3348.901 kb on - strand at 3348.910 kb on + strand at 3348.912 kb on + strand at 3348.931 kb on + strand at 3348.931 kb on + strand at 3348.939 kb on - strand at 3348.939 kb on - strand at 3348.939 kb on - strand at 3348.977 kb on - strand at 3349.001 kb on + strand, within PGA1_c31940 at 3349.078 kb on - strand, within PGA1_c31940 at 3349.117 kb on + strand, within PGA1_c31940 at 3349.125 kb on - strand, within PGA1_c31940 at 3349.125 kb on - strand, within PGA1_c31940 at 3349.135 kb on - strand, within PGA1_c31940 at 3349.164 kb on - strand, within PGA1_c31940 at 3349.177 kb on + strand, within PGA1_c31940 at 3349.202 kb on + strand, within PGA1_c31940 at 3349.202 kb on + strand, within PGA1_c31940 at 3349.202 kb on + strand, within PGA1_c31940 at 3349.202 kb on + strand, within PGA1_c31940 at 3349.202 kb on + strand, within PGA1_c31940 at 3349.202 kb on + strand, within PGA1_c31940 at 3349.210 kb on - strand, within PGA1_c31940 at 3349.360 kb on + strand, within PGA1_c31940 at 3349.368 kb on - strand, within PGA1_c31940 at 3349.405 kb on + strand, within PGA1_c31940 at 3349.405 kb on + strand, within PGA1_c31940 at 3349.428 kb on - strand, within PGA1_c31940 at 3349.444 kb on + strand, within PGA1_c31940 at 3349.452 kb on - strand, within PGA1_c31940 at 3349.515 kb on + strand, within PGA1_c31940 at 3349.525 kb on - strand, within PGA1_c31940 at 3349.583 kb on - strand, within PGA1_c31940 at 3349.585 kb on + strand, within PGA1_c31940 at 3349.633 kb on - strand, within PGA1_c31940 at 3349.653 kb on - strand, within PGA1_c31940 at 3349.668 kb on + strand, within PGA1_c31940 at 3349.698 kb on - strand, within PGA1_c31940 at 3349.732 kb on + strand at 3349.739 kb on - strand at 3349.740 kb on - strand at 3349.755 kb on - strand at 3349.755 kb on - strand at 3349.786 kb on - strand at 3349.838 kb on + strand at 3349.846 kb on - strand at 3349.846 kb on - strand at 3349.846 kb on - strand at 3349.846 kb on - strand at 3349.856 kb on - strand at 3349.877 kb on - strand at 3349.896 kb on + strand, within PGA1_c31950 at 3349.896 kb on + strand, within PGA1_c31950
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 3,346,570 + PGA1_c31910 0.41 -3.1 3,346,593 + PGA1_c31910 0.49 -2.3 3,346,598 + PGA1_c31910 0.51 -1.9 3,346,598 + PGA1_c31910 0.51 -2.0 3,346,601 - PGA1_c31910 0.52 -0.4 3,346,603 + PGA1_c31910 0.52 -2.0 3,346,603 + PGA1_c31910 0.52 -2.6 3,346,603 + PGA1_c31910 0.52 -3.4 3,346,603 + PGA1_c31910 0.52 -3.6 3,346,603 + PGA1_c31910 0.52 +0.1 3,346,603 + PGA1_c31910 0.52 -0.4 3,346,603 + PGA1_c31910 0.52 -2.9 3,346,603 + PGA1_c31910 0.52 -2.0 3,346,603 + PGA1_c31910 0.52 -3.0 3,346,603 + PGA1_c31910 0.52 -1.7 3,346,603 + PGA1_c31910 0.52 -3.3 3,346,603 + PGA1_c31910 0.52 -2.2 3,346,603 + PGA1_c31910 0.52 -1.2 3,346,603 + PGA1_c31910 0.52 +0.1 3,346,606 - PGA1_c31910 0.53 -2.2 3,346,611 - PGA1_c31910 0.55 -2.9 3,346,611 - PGA1_c31910 0.55 -3.7 3,346,611 - PGA1_c31910 0.55 -2.4 3,346,611 - PGA1_c31910 0.55 -1.8 3,346,611 - PGA1_c31910 0.55 -0.4 3,346,611 - PGA1_c31910 0.55 -1.9 3,346,611 - PGA1_c31910 0.55 -1.7 3,346,728 - -3.7 3,346,773 - -1.0 3,346,803 + -1.1 3,346,823 - +0.1 3,346,853 + -0.9 3,346,853 + -0.6 3,346,853 + -1.5 3,346,855 + +0.3 3,346,861 - -1.2 3,346,861 - -0.8 3,346,863 - +1.0 3,346,893 + -0.4 3,346,994 - PGA1_c31920 0.21 +0.7 3,346,996 + PGA1_c31920 0.21 -0.4 3,347,004 - PGA1_c31920 0.22 +0.8 3,347,004 - PGA1_c31920 0.22 -0.9 3,347,029 + PGA1_c31920 0.27 +0.1 3,347,042 - PGA1_c31920 0.29 -1.8 3,347,075 - PGA1_c31920 0.34 +1.5 3,347,095 + PGA1_c31920 0.38 -0.7 3,347,103 - PGA1_c31920 0.39 +0.5 3,347,114 + PGA1_c31920 0.41 +0.8 3,347,166 - PGA1_c31920 0.50 -0.8 3,347,176 - PGA1_c31920 0.52 -1.9 3,347,178 + PGA1_c31920 0.52 +0.4 3,347,201 + PGA1_c31920 0.56 -0.7 3,347,363 - PGA1_c31920 0.83 -0.3 3,347,460 + +0.6 3,347,460 + +0.1 3,347,463 - +1.0 3,347,480 + -1.1 3,347,518 - -0.4 3,347,569 - +3.0 3,347,610 + +3.7 3,347,610 - +3.9 3,347,669 + +3.3 3,347,678 - PGA1_c31930 0.10 -0.4 3,347,679 - PGA1_c31930 0.11 +2.5 3,347,685 + PGA1_c31930 0.11 +1.6 3,347,705 + PGA1_c31930 0.12 +3.0 3,347,705 + PGA1_c31930 0.12 +2.5 3,347,705 + PGA1_c31930 0.12 +2.3 3,347,705 + PGA1_c31930 0.12 +4.0 3,347,705 + PGA1_c31930 0.12 +2.3 3,347,713 - PGA1_c31930 0.13 +2.0 3,347,713 - PGA1_c31930 0.13 +3.4 3,347,727 + PGA1_c31930 0.14 +3.4 3,347,727 - PGA1_c31930 0.14 +2.7 3,347,737 + PGA1_c31930 0.15 +3.3 3,347,750 - PGA1_c31930 0.16 +3.3 3,347,878 + PGA1_c31930 0.25 +3.7 3,347,886 - PGA1_c31930 0.26 +2.7 3,347,890 + PGA1_c31930 0.26 +2.1 3,347,891 - PGA1_c31930 0.26 +3.9 3,347,971 - PGA1_c31930 0.32 +2.4 3,348,075 - PGA1_c31930 0.40 +4.1 3,348,085 + PGA1_c31930 0.40 +3.3 3,348,124 + PGA1_c31930 0.43 +2.5 3,348,143 + PGA1_c31930 0.45 +3.4 3,348,145 + PGA1_c31930 0.45 +2.9 3,348,153 - PGA1_c31930 0.45 +3.0 3,348,156 + +3.2 3,348,230 - PGA1_c31930 0.51 +1.9 3,348,251 - PGA1_c31930 0.52 +3.6 3,348,265 + PGA1_c31930 0.53 +2.5 3,348,267 + PGA1_c31930 0.54 +3.1 3,348,275 - PGA1_c31930 0.54 +3.3 3,348,332 + PGA1_c31930 0.58 +3.6 3,348,335 + PGA1_c31930 0.59 +3.9 3,348,338 - PGA1_c31930 0.59 +3.8 3,348,340 + PGA1_c31930 0.59 +3.1 3,348,390 + PGA1_c31930 0.63 +3.3 3,348,390 + PGA1_c31930 0.63 +2.2 3,348,390 + PGA1_c31930 0.63 +2.4 3,348,398 - PGA1_c31930 0.63 +2.3 3,348,398 - PGA1_c31930 0.63 +2.9 3,348,398 - PGA1_c31930 0.63 +3.5 3,348,403 - PGA1_c31930 0.64 +3.6 3,348,463 - PGA1_c31930 0.68 +3.6 3,348,463 - PGA1_c31930 0.68 +2.2 3,348,471 - PGA1_c31930 0.69 +3.7 3,348,519 + PGA1_c31930 0.72 +2.1 3,348,557 - PGA1_c31930 0.75 +3.0 3,348,580 - PGA1_c31930 0.77 +4.4 3,348,605 - PGA1_c31930 0.78 +4.1 3,348,606 - PGA1_c31930 0.78 +3.4 3,348,606 - PGA1_c31930 0.78 +3.1 3,348,608 + PGA1_c31930 0.79 +3.6 3,348,639 - PGA1_c31930 0.81 +2.2 3,348,644 - PGA1_c31930 0.81 +4.4 3,348,644 - PGA1_c31930 0.81 +3.6 3,348,682 + PGA1_c31930 0.84 +1.1 3,348,682 + PGA1_c31930 0.84 +3.8 3,348,682 + PGA1_c31930 0.84 +3.1 3,348,682 + PGA1_c31930 0.84 +3.3 3,348,682 + PGA1_c31930 0.84 +3.0 3,348,682 + PGA1_c31930 0.84 +2.0 3,348,690 - PGA1_c31930 0.85 +4.7 3,348,690 - PGA1_c31930 0.85 +2.7 3,348,690 - PGA1_c31930 0.85 +3.1 3,348,692 + PGA1_c31930 0.85 +3.1 3,348,723 - PGA1_c31930 0.87 +3.2 3,348,731 + PGA1_c31930 0.88 +2.2 3,348,732 - PGA1_c31930 0.88 +2.9 3,348,741 + PGA1_c31930 0.88 +4.1 3,348,749 - PGA1_c31930 0.89 -1.8 3,348,765 - +3.0 3,348,800 + +4.7 3,348,808 + +2.6 3,348,808 - +3.5 3,348,869 - +2.9 3,348,874 - +2.5 3,348,874 - +3.5 3,348,877 + +4.9 3,348,880 - +4.2 3,348,901 - -0.0 3,348,910 + -0.3 3,348,912 + -0.4 3,348,931 + +0.2 3,348,931 + +0.6 3,348,939 - +0.1 3,348,939 - -1.3 3,348,939 - -2.5 3,348,977 - -0.6 3,349,001 + PGA1_c31940 0.11 +1.5 3,349,078 - PGA1_c31940 0.20 +1.9 3,349,117 + PGA1_c31940 0.24 +0.1 3,349,125 - PGA1_c31940 0.25 -1.5 3,349,125 - PGA1_c31940 0.25 +0.5 3,349,135 - PGA1_c31940 0.26 +0.2 3,349,164 - PGA1_c31940 0.29 +2.7 3,349,177 + PGA1_c31940 0.30 +0.5 3,349,202 + PGA1_c31940 0.33 +0.5 3,349,202 + PGA1_c31940 0.33 +0.8 3,349,202 + PGA1_c31940 0.33 +0.6 3,349,202 + PGA1_c31940 0.33 +0.3 3,349,202 + PGA1_c31940 0.33 -2.5 3,349,202 + PGA1_c31940 0.33 +0.4 3,349,210 - PGA1_c31940 0.34 +1.3 3,349,360 + PGA1_c31940 0.50 +0.6 3,349,368 - PGA1_c31940 0.51 +0.9 3,349,405 + PGA1_c31940 0.55 +1.2 3,349,405 + PGA1_c31940 0.55 -2.3 3,349,428 - PGA1_c31940 0.58 -0.2 3,349,444 + PGA1_c31940 0.59 +0.6 3,349,452 - PGA1_c31940 0.60 -0.2 3,349,515 + PGA1_c31940 0.67 +1.7 3,349,525 - PGA1_c31940 0.68 -0.8 3,349,583 - PGA1_c31940 0.74 +0.2 3,349,585 + PGA1_c31940 0.75 +0.1 3,349,633 - PGA1_c31940 0.80 -1.0 3,349,653 - PGA1_c31940 0.82 -0.0 3,349,668 + PGA1_c31940 0.84 +1.8 3,349,698 - PGA1_c31940 0.87 +0.3 3,349,732 + +0.9 3,349,739 - -0.0 3,349,740 - +0.7 3,349,755 - +1.3 3,349,755 - -0.8 3,349,786 - +0.1 3,349,838 + +1.3 3,349,846 - -1.1 3,349,846 - -1.2 3,349,846 - +0.5 3,349,846 - -0.8 3,349,856 - +1.2 3,349,877 - -1.0 3,349,896 + PGA1_c31950 0.11 +1.6 3,349,896 + PGA1_c31950 0.11 +1.3
Or see this region's nucleotide sequence