Experiment: Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3089 and Psest_3090 overlap by 8 nucleotides Psest_3090 and Psest_3091 are separated by 48 nucleotides Psest_3091 and Psest_3092 overlap by 8 nucleotides Psest_3092 and Psest_3093 overlap by 4 nucleotides
Psest_3089: Psest_3089 - pyridoxine 5'-phosphate synthase, at 3,268,592 to 3,269,338
_3089
Psest_3090: Psest_3090 - DNA repair protein RecO, at 3,269,331 to 3,270,020
_3090
Psest_3091: Psest_3091 - GTP-binding protein Era, at 3,270,069 to 3,270,980
_3091
Psest_3092: Psest_3092 - ribonuclease III, bacterial, at 3,270,973 to 3,271,662
_3092
Psest_3093: Psest_3093 - hypothetical protein, at 3,271,659 to 3,272,036
_3093
Position (kb)
3270
3271 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3269.589 kb on - strand, within Psest_3090 at 3269.592 kb on + strand, within Psest_3090 at 3269.592 kb on + strand, within Psest_3090 at 3269.592 kb on + strand, within Psest_3090 at 3269.592 kb on + strand, within Psest_3090 at 3269.592 kb on + strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.701 kb on + strand, within Psest_3090 at 3269.701 kb on + strand, within Psest_3090 at 3269.702 kb on - strand, within Psest_3090 at 3269.767 kb on + strand, within Psest_3090 at 3269.767 kb on + strand, within Psest_3090 at 3269.767 kb on + strand, within Psest_3090 at 3269.767 kb on + strand, within Psest_3090 at 3269.767 kb on + strand, within Psest_3090 at 3269.768 kb on - strand, within Psest_3090 at 3269.768 kb on - strand, within Psest_3090 at 3269.768 kb on - strand, within Psest_3090 at 3269.983 kb on + strand at 3269.984 kb on - strand at 3271.296 kb on - strand, within Psest_3092 at 3271.296 kb on - strand, within Psest_3092 at 3271.576 kb on - strand, within Psest_3092 at 3271.576 kb on - strand, within Psest_3092 at 3271.576 kb on - strand, within Psest_3092 at 3271.576 kb on - strand, within Psest_3092 at 3271.672 kb on - strand at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.837 kb on - strand, within Psest_3093 at 3271.847 kb on - strand, within Psest_3093 at 3271.922 kb on - strand, within Psest_3093 at 3271.922 kb on - strand, within Psest_3093 at 3271.931 kb on - strand, within Psest_3093
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml remove 3,269,589 - Psest_3090 0.37 -1.0 3,269,592 + Psest_3090 0.38 +0.5 3,269,592 + Psest_3090 0.38 -2.4 3,269,592 + Psest_3090 0.38 -1.6 3,269,592 + Psest_3090 0.38 -0.5 3,269,592 + Psest_3090 0.38 -0.3 3,269,593 - Psest_3090 0.38 -1.7 3,269,593 - Psest_3090 0.38 -0.8 3,269,593 - Psest_3090 0.38 -1.1 3,269,593 - Psest_3090 0.38 +0.4 3,269,593 - Psest_3090 0.38 -0.4 3,269,593 - Psest_3090 0.38 -1.8 3,269,593 - Psest_3090 0.38 -1.4 3,269,593 - Psest_3090 0.38 -0.4 3,269,593 - Psest_3090 0.38 +0.4 3,269,593 - Psest_3090 0.38 -0.8 3,269,593 - Psest_3090 0.38 +0.0 3,269,701 + Psest_3090 0.54 +1.1 3,269,701 + Psest_3090 0.54 -1.1 3,269,702 - Psest_3090 0.54 +0.2 3,269,767 + Psest_3090 0.63 -1.7 3,269,767 + Psest_3090 0.63 -1.6 3,269,767 + Psest_3090 0.63 -0.7 3,269,767 + Psest_3090 0.63 -0.8 3,269,767 + Psest_3090 0.63 -0.9 3,269,768 - Psest_3090 0.63 -1.4 3,269,768 - Psest_3090 0.63 -0.7 3,269,768 - Psest_3090 0.63 -1.0 3,269,983 + -0.3 3,269,984 - -1.2 3,271,296 - Psest_3092 0.47 -2.1 3,271,296 - Psest_3092 0.47 -0.8 3,271,576 - Psest_3092 0.87 +0.0 3,271,576 - Psest_3092 0.87 -1.8 3,271,576 - Psest_3092 0.87 -0.6 3,271,576 - Psest_3092 0.87 -0.6 3,271,672 - -1.1 3,271,837 - Psest_3093 0.47 -0.7 3,271,837 - Psest_3093 0.47 +0.5 3,271,837 - Psest_3093 0.47 -0.2 3,271,837 - Psest_3093 0.47 +0.8 3,271,837 - Psest_3093 0.47 +1.6 3,271,837 - Psest_3093 0.47 -1.9 3,271,837 - Psest_3093 0.47 +0.6 3,271,837 - Psest_3093 0.47 +2.1 3,271,837 - Psest_3093 0.47 +1.0 3,271,837 - Psest_3093 0.47 +0.0 3,271,837 - Psest_3093 0.47 +2.4 3,271,837 - Psest_3093 0.47 +0.4 3,271,837 - Psest_3093 0.47 +0.0 3,271,837 - Psest_3093 0.47 -0.1 3,271,847 - Psest_3093 0.50 -0.3 3,271,922 - Psest_3093 0.70 -2.8 3,271,922 - Psest_3093 0.70 +0.9 3,271,931 - Psest_3093 0.72 -0.5
Or see this region's nucleotide sequence