Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3091

Experiment: Cephalothin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3089 and Psest_3090 overlap by 8 nucleotidesPsest_3090 and Psest_3091 are separated by 48 nucleotidesPsest_3091 and Psest_3092 overlap by 8 nucleotidesPsest_3092 and Psest_3093 overlap by 4 nucleotides Psest_3089: Psest_3089 - pyridoxine 5'-phosphate synthase, at 3,268,592 to 3,269,338 _3089 Psest_3090: Psest_3090 - DNA repair protein RecO, at 3,269,331 to 3,270,020 _3090 Psest_3091: Psest_3091 - GTP-binding protein Era, at 3,270,069 to 3,270,980 _3091 Psest_3092: Psest_3092 - ribonuclease III, bacterial, at 3,270,973 to 3,271,662 _3092 Psest_3093: Psest_3093 - hypothetical protein, at 3,271,659 to 3,272,036 _3093 Position (kb) 3270 3271Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3269.589 kb on - strand, within Psest_3090at 3269.592 kb on + strand, within Psest_3090at 3269.592 kb on + strand, within Psest_3090at 3269.592 kb on + strand, within Psest_3090at 3269.592 kb on + strand, within Psest_3090at 3269.592 kb on + strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.701 kb on + strand, within Psest_3090at 3269.701 kb on + strand, within Psest_3090at 3269.702 kb on - strand, within Psest_3090at 3269.767 kb on + strand, within Psest_3090at 3269.767 kb on + strand, within Psest_3090at 3269.767 kb on + strand, within Psest_3090at 3269.767 kb on + strand, within Psest_3090at 3269.767 kb on + strand, within Psest_3090at 3269.768 kb on - strand, within Psest_3090at 3269.768 kb on - strand, within Psest_3090at 3269.768 kb on - strand, within Psest_3090at 3269.983 kb on + strandat 3269.984 kb on - strandat 3271.296 kb on - strand, within Psest_3092at 3271.296 kb on - strand, within Psest_3092at 3271.576 kb on - strand, within Psest_3092at 3271.576 kb on - strand, within Psest_3092at 3271.576 kb on - strand, within Psest_3092at 3271.576 kb on - strand, within Psest_3092at 3271.672 kb on - strandat 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.847 kb on - strand, within Psest_3093at 3271.922 kb on - strand, within Psest_3093at 3271.922 kb on - strand, within Psest_3093at 3271.931 kb on - strand, within Psest_3093

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml
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3,269,589 - Psest_3090 0.37 -1.0
3,269,592 + Psest_3090 0.38 +0.5
3,269,592 + Psest_3090 0.38 -2.4
3,269,592 + Psest_3090 0.38 -1.6
3,269,592 + Psest_3090 0.38 -0.5
3,269,592 + Psest_3090 0.38 -0.3
3,269,593 - Psest_3090 0.38 -1.7
3,269,593 - Psest_3090 0.38 -0.8
3,269,593 - Psest_3090 0.38 -1.1
3,269,593 - Psest_3090 0.38 +0.4
3,269,593 - Psest_3090 0.38 -0.4
3,269,593 - Psest_3090 0.38 -1.8
3,269,593 - Psest_3090 0.38 -1.4
3,269,593 - Psest_3090 0.38 -0.4
3,269,593 - Psest_3090 0.38 +0.4
3,269,593 - Psest_3090 0.38 -0.8
3,269,593 - Psest_3090 0.38 +0.0
3,269,701 + Psest_3090 0.54 +1.1
3,269,701 + Psest_3090 0.54 -1.1
3,269,702 - Psest_3090 0.54 +0.2
3,269,767 + Psest_3090 0.63 -1.7
3,269,767 + Psest_3090 0.63 -1.6
3,269,767 + Psest_3090 0.63 -0.7
3,269,767 + Psest_3090 0.63 -0.8
3,269,767 + Psest_3090 0.63 -0.9
3,269,768 - Psest_3090 0.63 -1.4
3,269,768 - Psest_3090 0.63 -0.7
3,269,768 - Psest_3090 0.63 -1.0
3,269,983 + -0.3
3,269,984 - -1.2
3,271,296 - Psest_3092 0.47 -2.1
3,271,296 - Psest_3092 0.47 -0.8
3,271,576 - Psest_3092 0.87 +0.0
3,271,576 - Psest_3092 0.87 -1.8
3,271,576 - Psest_3092 0.87 -0.6
3,271,576 - Psest_3092 0.87 -0.6
3,271,672 - -1.1
3,271,837 - Psest_3093 0.47 -0.7
3,271,837 - Psest_3093 0.47 +0.5
3,271,837 - Psest_3093 0.47 -0.2
3,271,837 - Psest_3093 0.47 +0.8
3,271,837 - Psest_3093 0.47 +1.6
3,271,837 - Psest_3093 0.47 -1.9
3,271,837 - Psest_3093 0.47 +0.6
3,271,837 - Psest_3093 0.47 +2.1
3,271,837 - Psest_3093 0.47 +1.0
3,271,837 - Psest_3093 0.47 +0.0
3,271,837 - Psest_3093 0.47 +2.4
3,271,837 - Psest_3093 0.47 +0.4
3,271,837 - Psest_3093 0.47 +0.0
3,271,837 - Psest_3093 0.47 -0.1
3,271,847 - Psest_3093 0.50 -0.3
3,271,922 - Psest_3093 0.70 -2.8
3,271,922 - Psest_3093 0.70 +0.9
3,271,931 - Psest_3093 0.72 -0.5

Or see this region's nucleotide sequence