Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30010

Experiment: m.b. Sisomicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Sisomicin 0.005 mg/ml
3,136,414	+		PGA1_c29990	0.52	+0.6
3,136,449	-		PGA1_c29990	0.55	+1.4
3,136,449	-		PGA1_c29990	0.55	-1.5
3,136,449	-		PGA1_c29990	0.55	+1.2
3,136,464	-		PGA1_c29990	0.57	+1.1
3,136,471	-		PGA1_c29990	0.58	-0.1
3,136,471	-		PGA1_c29990	0.58	+0.7
3,136,505	+		PGA1_c29990	0.61	+2.2
3,136,505	-		PGA1_c29990	0.61	+1.7
3,136,600	-		PGA1_c29990	0.70	+1.2
3,136,603	+		PGA1_c29990	0.71	-0.8
3,136,608	+		PGA1_c29990	0.71	+1.8
3,136,662	+		PGA1_c29990	0.77	+0.5
3,136,738	+		PGA1_c29990	0.84	+0.5
3,136,764	+		PGA1_c29990	0.87	+1.4
3,136,805	-				+1.2
3,136,805	-				+2.0
3,136,823	+				+1.2
3,136,823	+				+1.6
3,136,823	+				+2.1
3,136,823	+				+0.5
3,136,831	-				+0.8
3,136,831	-				+1.8
3,136,831	-				+1.5
3,136,831	-				+1.3
3,136,870	+				+0.4
3,137,007	+		PGA1_c30000	0.29	+0.5
3,137,063	+		PGA1_c30000	0.46	+0.5
3,137,095	-		PGA1_c30000	0.55	-1.3
3,137,101	-		PGA1_c30000	0.57	+3.0
3,137,124	-		PGA1_c30000	0.63	-0.9
3,137,151	-		PGA1_c30000	0.71	-0.8
3,137,183	+		PGA1_c30000	0.81	-1.2
3,137,235	+				-0.0
3,137,241	+				+0.2
3,137,243	-				-1.5
3,137,243	-				-0.7
3,137,245	+				+0.3
3,137,282	-				-1.2
3,137,288	+				+0.2
3,137,299	-				-1.7
3,137,299	-				+1.1
3,137,299	-				-1.3
3,137,299	-				+1.3
3,137,299	-				-0.3
3,137,311	+				+0.9
3,137,312	+				+0.3
3,137,321	+				-2.1
3,137,330	+				-1.0
3,137,373	+				-1.7
3,137,373	+				-1.4
3,137,373	+				+0.9
3,137,373	+				-0.9
3,137,373	+				+0.1
3,137,373	+				-0.2
3,137,381	-				+1.2
3,137,381	-				-1.2
3,137,412	+		PGA1_c30010	0.11	-0.9
3,137,420	-		PGA1_c30010	0.12	-2.3
3,137,449	-		PGA1_c30010	0.16	-0.6
3,137,472	+		PGA1_c30010	0.19	+0.2
3,137,511	-		PGA1_c30010	0.24	-0.6
3,137,526	-		PGA1_c30010	0.26	-2.0
3,137,539	+		PGA1_c30010	0.28	-1.7
3,137,539	+		PGA1_c30010	0.28	-0.3
3,137,547	-		PGA1_c30010	0.29	-1.6
3,137,555	-		PGA1_c30010	0.31	-0.6
3,137,581	-		PGA1_c30010	0.34	-1.3
3,137,599	+		PGA1_c30010	0.37	-0.2
3,137,625	+		PGA1_c30010	0.40	+1.3
3,137,625	+		PGA1_c30010	0.40	+0.0
3,137,625	+		PGA1_c30010	0.40	-0.4
3,137,625	+		PGA1_c30010	0.40	+0.7
3,137,633	-		PGA1_c30010	0.41	-0.1
3,137,633	-		PGA1_c30010	0.41	+0.1
3,137,634	+		PGA1_c30010	0.42	-0.7
3,137,639	+		PGA1_c30010	0.42	-3.8
3,137,639	+		PGA1_c30010	0.42	-0.9
3,137,642	-		PGA1_c30010	0.43	-2.3
3,137,642	-		PGA1_c30010	0.43	-0.9
3,137,663	-		PGA1_c30010	0.46	-1.4
3,137,674	+		PGA1_c30010	0.47	+0.3
3,137,679	+		PGA1_c30010	0.48	+0.1
3,137,679	+		PGA1_c30010	0.48	-2.1
3,137,679	+		PGA1_c30010	0.48	-0.3
3,137,682	-		PGA1_c30010	0.48	-0.0
3,137,682	-		PGA1_c30010	0.48	-0.3
3,137,723	+		PGA1_c30010	0.54	+1.2
3,137,780	-		PGA1_c30010	0.62	+0.2
3,137,794	-		PGA1_c30010	0.64	-1.3
3,137,816	+		PGA1_c30010	0.67	-1.9
3,137,819	-		PGA1_c30010	0.68	-0.8
3,137,819	-		PGA1_c30010	0.68	-0.4
3,137,819	-		PGA1_c30010	0.68	-2.4
3,137,824	-		PGA1_c30010	0.68	+0.7
3,137,824	-		PGA1_c30010	0.68	+0.4
3,137,824	-		PGA1_c30010	0.68	-0.2
3,137,824	-		PGA1_c30010	0.68	+1.2
3,137,913	-		PGA1_c30010	0.81	-0.1
3,137,929	+		PGA1_c30010	0.83	-0.2
3,137,937	-		PGA1_c30010	0.84	+0.3
3,137,962	+		PGA1_c30010	0.88	-0.9
3,138,028	+				-1.5
3,138,031	-				-0.9
3,138,041	+				+2.0
3,138,046	+				+1.1
3,138,053	-				-3.7
3,138,055	+				+1.4
3,138,055	+				+0.7
3,138,055	+				+1.0
3,138,055	+				-1.1
3,138,055	+				-2.5
3,138,055	+				+0.3
3,138,055	+				-0.5
3,138,055	+				+2.3
3,138,055	+				-0.5
3,138,055	+				-0.4
3,138,063	-				-2.3
3,138,063	-				-0.5
3,138,063	-				+0.2
3,138,063	-				-0.6
3,138,063	-				+0.3
3,138,063	-				+0.0
3,138,063	-				+1.2
3,138,063	-				-0.8
3,138,063	-				+1.1
3,138,063	-				+0.2
3,138,074	+				-0.2
3,138,081	+				+0.3
3,138,081	+				+0.8
3,138,081	+				-0.4
3,138,082	-				+0.1
3,138,086	+				-0.2
3,138,089	-				+1.1
3,138,094	-				-0.5
3,138,101	-				-0.6
3,138,140	+		PGA1_c30020	0.14	+0.1
3,138,142	-		PGA1_c30020	0.15	+1.0
3,138,186	+		PGA1_c30020	0.28	+0.4
3,138,198	-		PGA1_c30020	0.32	+1.4
3,138,225	-		PGA1_c30020	0.40	-0.3
3,138,232	+		PGA1_c30020	0.42	+1.1
3,138,279	+		PGA1_c30020	0.55	+0.7
3,138,279	+		PGA1_c30020	0.55	+0.4
3,138,287	-		PGA1_c30020	0.58	+0.5
3,138,361	-		PGA1_c30020	0.80	-2.1
3,138,376	-		PGA1_c30020	0.84	+0.3
3,138,384	+		PGA1_c30020	0.86	+2.4
3,138,384	+		PGA1_c30020	0.86	+1.3
3,138,384	+		PGA1_c30020	0.86	-1.9
3,138,384	+		PGA1_c30020	0.86	+0.3
3,138,389	+		PGA1_c30020	0.88	+1.7
3,138,392	-		PGA1_c30020	0.89	-1.7
3,138,392	-		PGA1_c30020	0.89	-0.2
3,138,392	-		PGA1_c30020	0.89	-0.9
3,138,392	-		PGA1_c30020	0.89	-0.1
3,138,392	-		PGA1_c30020	0.89	-1.3
3,138,392	-		PGA1_c30020	0.89	-0.8
3,138,392	-		PGA1_c30020	0.89	-0.1
3,138,397	-				-3.4
3,138,423	+				-0.4
3,138,425	-				-0.1
3,138,431	-				-0.0
3,138,498	+				-1.6
3,138,512	-				-0.6
3,138,523	-				-0.7
3,138,533	+				-0.3
3,138,533	+				+0.1
3,138,543	+				+1.3
3,138,549	+				-3.9
3,138,549	-				-2.5
3,138,550	+				-1.5
3,138,550	+				-2.8
3,138,550	+				-0.5
3,138,550	+				+0.8
3,138,557	-				-0.8
3,138,558	-				-0.9
3,138,558	-				-0.7
3,138,558	-				-3.3
3,138,558	-				-1.4
3,138,583	+				-0.3
3,138,608	+				-1.2
3,138,641	+				-2.3
3,138,649	-				-2.5
3,138,694	+				-2.1
3,138,695	+				-1.0
3,138,700	+				-1.0
3,138,700	+				-0.7
3,138,700	+				+0.6
3,138,700	+				-3.7
3,138,702	-				-2.4
3,138,708	-				-2.3
3,138,708	-				-1.5
3,138,708	-				-1.3
3,138,708	-				-2.6