Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2697 and HP15_2698 are separated by 17 nucleotides HP15_2698 and HP15_2699 are separated by 12 nucleotides HP15_2699 and HP15_2700 overlap by 17 nucleotides HP15_2700 and HP15_2701 are separated by 13 nucleotides
HP15_2697: HP15_2697 - phenylacetate-CoA oxygenase, PaaG subunit, at 2,850,022 to 2,851,014
_2697
HP15_2698: HP15_2698 - phenylacetate-CoA oxygenase, PaaH subunit, at 2,851,032 to 2,851,313
_2698
HP15_2699: HP15_2699 - phenylacetate-CoA oxygenase, PaaI subunit, at 2,851,326 to 2,852,090
_2699
HP15_2700: HP15_2700 - phenylacetate-CoA oxygenase, PaaJ subunit, at 2,852,074 to 2,852,643
_2700
HP15_2701: HP15_2701 - phenylacetic acid degradation oxidoreductase PaaK, at 2,852,657 to 2,853,736
_2701
Position (kb)
2851
2852
2853 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2850.923 kb on - strand at 2850.967 kb on + strand at 2851.100 kb on - strand, within HP15_2698 at 2851.178 kb on - strand, within HP15_2698 at 2851.307 kb on + strand at 2851.315 kb on - strand at 2851.315 kb on - strand at 2851.356 kb on + strand at 2851.453 kb on + strand, within HP15_2699 at 2851.592 kb on + strand, within HP15_2699 at 2851.939 kb on - strand, within HP15_2699 at 2851.959 kb on - strand, within HP15_2699 at 2851.988 kb on + strand, within HP15_2699 at 2852.037 kb on - strand at 2852.207 kb on - strand, within HP15_2700 at 2852.231 kb on - strand, within HP15_2700 at 2852.301 kb on - strand, within HP15_2700 at 2852.590 kb on - strand at 2852.850 kb on + strand, within HP15_2701 at 2853.032 kb on - strand, within HP15_2701
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 2,850,923 - -0.6 2,850,967 + -1.0 2,851,100 - HP15_2698 0.24 -2.3 2,851,178 - HP15_2698 0.52 -0.3 2,851,307 + -0.4 2,851,315 - -0.4 2,851,315 - +0.7 2,851,356 + -2.0 2,851,453 + HP15_2699 0.17 -0.5 2,851,592 + HP15_2699 0.35 -2.2 2,851,939 - HP15_2699 0.80 -1.6 2,851,959 - HP15_2699 0.83 -0.7 2,851,988 + HP15_2699 0.87 -1.0 2,852,037 - -3.3 2,852,207 - HP15_2700 0.23 -1.7 2,852,231 - HP15_2700 0.28 +0.1 2,852,301 - HP15_2700 0.40 -1.5 2,852,590 - -1.8 2,852,850 + HP15_2701 0.18 -0.0 2,853,032 - HP15_2701 0.35 -0.7
Or see this region's nucleotide sequence