Strain Fitness in Marinobacter adhaerens HP15 around HP15_2699

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2697 and HP15_2698 are separated by 17 nucleotidesHP15_2698 and HP15_2699 are separated by 12 nucleotidesHP15_2699 and HP15_2700 overlap by 17 nucleotidesHP15_2700 and HP15_2701 are separated by 13 nucleotides HP15_2697: HP15_2697 - phenylacetate-CoA oxygenase, PaaG subunit, at 2,850,022 to 2,851,014 _2697 HP15_2698: HP15_2698 - phenylacetate-CoA oxygenase, PaaH subunit, at 2,851,032 to 2,851,313 _2698 HP15_2699: HP15_2699 - phenylacetate-CoA oxygenase, PaaI subunit, at 2,851,326 to 2,852,090 _2699 HP15_2700: HP15_2700 - phenylacetate-CoA oxygenase, PaaJ subunit, at 2,852,074 to 2,852,643 _2700 HP15_2701: HP15_2701 - phenylacetic acid degradation oxidoreductase PaaK, at 2,852,657 to 2,853,736 _2701 Position (kb) 2851 2852 2853Strain fitness (log2 ratio) -3 -2 -1 0 1at 2850.923 kb on - strandat 2850.967 kb on + strandat 2851.100 kb on - strand, within HP15_2698at 2851.178 kb on - strand, within HP15_2698at 2851.307 kb on + strandat 2851.315 kb on - strandat 2851.315 kb on - strandat 2851.356 kb on + strandat 2851.453 kb on + strand, within HP15_2699at 2851.592 kb on + strand, within HP15_2699at 2851.939 kb on - strand, within HP15_2699at 2851.959 kb on - strand, within HP15_2699at 2851.988 kb on + strand, within HP15_2699at 2852.037 kb on - strandat 2852.207 kb on - strand, within HP15_2700at 2852.231 kb on - strand, within HP15_2700at 2852.301 kb on - strand, within HP15_2700at 2852.590 kb on - strandat 2852.850 kb on + strand, within HP15_2701at 2853.032 kb on - strand, within HP15_2701

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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2,850,923 - -0.6
2,850,967 + -1.0
2,851,100 - HP15_2698 0.24 -2.3
2,851,178 - HP15_2698 0.52 -0.3
2,851,307 + -0.4
2,851,315 - -0.4
2,851,315 - +0.7
2,851,356 + -2.0
2,851,453 + HP15_2699 0.17 -0.5
2,851,592 + HP15_2699 0.35 -2.2
2,851,939 - HP15_2699 0.80 -1.6
2,851,959 - HP15_2699 0.83 -0.7
2,851,988 + HP15_2699 0.87 -1.0
2,852,037 - -3.3
2,852,207 - HP15_2700 0.23 -1.7
2,852,231 - HP15_2700 0.28 +0.1
2,852,301 - HP15_2700 0.40 -1.5
2,852,590 - -1.8
2,852,850 + HP15_2701 0.18 -0.0
2,853,032 - HP15_2701 0.35 -0.7

Or see this region's nucleotide sequence