Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02580 and PGA1_c02590 are separated by 237 nucleotides PGA1_c02590 and PGA1_c02600 are separated by 4 nucleotides
PGA1_c02580: PGA1_c02580 - putative HTH-type transcriptional regulator pcaQ, at 241,999 to 242,916
_c02580
PGA1_c02590: PGA1_c02590 - putative high-affinity branched-chain amino acid transport system permease protein LivH, at 243,154 to 244,029
_c02590
PGA1_c02600: PGA1_c02600 - putative high-affinity branched-chain amino acid transport system permease protein LivM, at 244,034 to 245,119
_c02600
Position (kb) 243
244
245 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 242.177 kb on + strand, within PGA1_c02580 at 242.185 kb on - strand, within PGA1_c02580 at 242.205 kb on - strand, within PGA1_c02580 at 242.236 kb on - strand, within PGA1_c02580 at 242.285 kb on + strand, within PGA1_c02580 at 242.351 kb on + strand, within PGA1_c02580 at 242.351 kb on + strand, within PGA1_c02580 at 242.429 kb on + strand, within PGA1_c02580 at 242.434 kb on + strand, within PGA1_c02580 at 242.442 kb on - strand, within PGA1_c02580 at 242.513 kb on + strand, within PGA1_c02580 at 242.519 kb on + strand, within PGA1_c02580 at 242.651 kb on + strand, within PGA1_c02580 at 242.718 kb on + strand, within PGA1_c02580 at 242.761 kb on - strand, within PGA1_c02580 at 242.764 kb on + strand, within PGA1_c02580 at 242.830 kb on - strand at 242.852 kb on + strand at 242.854 kb on + strand at 242.865 kb on + strand at 242.924 kb on + strand at 242.924 kb on + strand at 242.953 kb on + strand at 243.024 kb on + strand at 243.040 kb on + strand at 243.055 kb on + strand at 243.062 kb on - strand at 243.064 kb on + strand at 243.067 kb on - strand at 243.067 kb on - strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.097 kb on + strand at 243.105 kb on - strand at 243.150 kb on - strand at 243.161 kb on + strand at 243.169 kb on - strand at 243.182 kb on - strand at 243.221 kb on + strand at 243.221 kb on + strand at 243.226 kb on + strand at 243.226 kb on + strand at 243.229 kb on - strand at 243.282 kb on + strand, within PGA1_c02590 at 243.298 kb on - strand, within PGA1_c02590 at 243.299 kb on + strand, within PGA1_c02590 at 243.307 kb on - strand, within PGA1_c02590 at 243.377 kb on + strand, within PGA1_c02590 at 243.397 kb on + strand, within PGA1_c02590 at 243.453 kb on - strand, within PGA1_c02590 at 243.453 kb on - strand, within PGA1_c02590 at 243.508 kb on - strand, within PGA1_c02590 at 243.604 kb on + strand, within PGA1_c02590 at 243.686 kb on - strand, within PGA1_c02590 at 243.715 kb on + strand, within PGA1_c02590 at 243.724 kb on + strand, within PGA1_c02590 at 243.724 kb on + strand, within PGA1_c02590 at 243.813 kb on + strand, within PGA1_c02590 at 243.819 kb on + strand, within PGA1_c02590 at 243.826 kb on + strand, within PGA1_c02590 at 243.849 kb on - strand, within PGA1_c02590 at 243.864 kb on + strand, within PGA1_c02590 at 243.901 kb on + strand, within PGA1_c02590 at 243.953 kb on + strand at 243.973 kb on + strand at 243.989 kb on + strand at 243.989 kb on + strand at 244.005 kb on - strand at 244.023 kb on + strand at 244.023 kb on + strand at 244.023 kb on + strand at 244.023 kb on + strand at 244.031 kb on - strand at 244.089 kb on + strand at 244.102 kb on + strand at 244.110 kb on - strand at 244.164 kb on - strand, within PGA1_c02600 at 244.164 kb on - strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.189 kb on - strand, within PGA1_c02600 at 244.211 kb on - strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.248 kb on - strand, within PGA1_c02600 at 244.251 kb on + strand, within PGA1_c02600 at 244.282 kb on + strand, within PGA1_c02600 at 244.295 kb on - strand, within PGA1_c02600 at 244.305 kb on - strand, within PGA1_c02600 at 244.306 kb on + strand, within PGA1_c02600 at 244.306 kb on + strand, within PGA1_c02600 at 244.322 kb on - strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.401 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.419 kb on + strand, within PGA1_c02600 at 244.465 kb on + strand, within PGA1_c02600 at 244.465 kb on + strand, within PGA1_c02600 at 244.473 kb on - strand, within PGA1_c02600 at 244.473 kb on - strand, within PGA1_c02600 at 244.513 kb on - strand, within PGA1_c02600 at 244.544 kb on - strand, within PGA1_c02600 at 244.567 kb on + strand, within PGA1_c02600 at 244.577 kb on + strand, within PGA1_c02600 at 244.577 kb on + strand, within PGA1_c02600 at 244.577 kb on + strand, within PGA1_c02600 at 244.619 kb on + strand, within PGA1_c02600 at 244.657 kb on + strand, within PGA1_c02600 at 244.688 kb on + strand, within PGA1_c02600 at 244.725 kb on - strand, within PGA1_c02600 at 244.733 kb on + strand, within PGA1_c02600 at 244.737 kb on + strand, within PGA1_c02600 at 244.737 kb on + strand, within PGA1_c02600 at 244.737 kb on + strand, within PGA1_c02600 at 244.784 kb on + strand, within PGA1_c02600 at 244.803 kb on + strand, within PGA1_c02600 at 244.816 kb on + strand, within PGA1_c02600 at 244.913 kb on + strand, within PGA1_c02600 at 244.919 kb on + strand, within PGA1_c02600 at 244.919 kb on + strand, within PGA1_c02600 at 244.919 kb on + strand, within PGA1_c02600 at 244.924 kb on + strand, within PGA1_c02600 at 244.924 kb on + strand, within PGA1_c02600 at 244.927 kb on - strand, within PGA1_c02600 at 244.982 kb on - strand, within PGA1_c02600 at 244.982 kb on - strand, within PGA1_c02600
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 242,177 + PGA1_c02580 0.19 -0.4 242,185 - PGA1_c02580 0.20 -2.6 242,205 - PGA1_c02580 0.22 -0.8 242,236 - PGA1_c02580 0.26 -2.6 242,285 + PGA1_c02580 0.31 -1.4 242,351 + PGA1_c02580 0.38 -0.9 242,351 + PGA1_c02580 0.38 +0.1 242,429 + PGA1_c02580 0.47 +1.2 242,434 + PGA1_c02580 0.47 +0.4 242,442 - PGA1_c02580 0.48 +0.4 242,513 + PGA1_c02580 0.56 -1.1 242,519 + PGA1_c02580 0.57 -0.3 242,651 + PGA1_c02580 0.71 +0.9 242,718 + PGA1_c02580 0.78 +0.1 242,761 - PGA1_c02580 0.83 +0.6 242,764 + PGA1_c02580 0.83 +0.9 242,830 - +0.2 242,852 + +0.1 242,854 + +0.2 242,865 + +0.1 242,924 + +0.4 242,924 + -0.2 242,953 + -1.5 243,024 + +0.6 243,040 + +0.1 243,055 + -0.7 243,062 - -2.2 243,064 + +0.4 243,067 - -0.5 243,067 - -1.2 243,087 + +1.1 243,087 + +0.1 243,087 + -1.5 243,087 + -0.3 243,087 + -0.3 243,087 + +0.7 243,087 + +0.1 243,087 + -0.3 243,087 + +0.8 243,087 + +0.1 243,087 + +0.8 243,087 + -0.9 243,087 + -0.3 243,087 + -2.0 243,087 + -0.1 243,087 + +0.1 243,087 + +0.5 243,087 + -0.5 243,087 + +0.8 243,087 + -0.2 243,087 + +1.0 243,087 + +0.1 243,087 + +1.3 243,087 + +3.7 243,087 + +0.7 243,087 + -1.4 243,087 + -0.7 243,087 + +0.6 243,087 + -0.6 243,087 + -0.5 243,087 + -1.1 243,087 + -0.9 243,087 + +1.3 243,087 + -1.8 243,095 - -0.2 243,095 - +0.7 243,095 - -0.7 243,095 - +0.3 243,095 - +0.9 243,095 - +0.6 243,095 - +0.8 243,095 - -1.2 243,095 - +0.1 243,095 - -0.1 243,095 - -0.4 243,095 - +1.5 243,095 - -0.4 243,095 - -0.7 243,095 - +0.7 243,097 + +1.2 243,105 - -2.3 243,150 - +0.3 243,161 + -0.4 243,169 - +0.1 243,182 - +0.9 243,221 + +1.4 243,221 + -0.6 243,226 + +1.0 243,226 + -0.1 243,229 - +0.3 243,282 + PGA1_c02590 0.15 -0.6 243,298 - PGA1_c02590 0.16 -3.0 243,299 + PGA1_c02590 0.17 -0.6 243,307 - PGA1_c02590 0.17 -2.3 243,377 + PGA1_c02590 0.25 -1.9 243,397 + PGA1_c02590 0.28 -1.0 243,453 - PGA1_c02590 0.34 +0.1 243,453 - PGA1_c02590 0.34 -0.4 243,508 - PGA1_c02590 0.40 -0.4 243,604 + PGA1_c02590 0.51 -0.6 243,686 - PGA1_c02590 0.61 +0.6 243,715 + PGA1_c02590 0.64 +0.5 243,724 + PGA1_c02590 0.65 -1.2 243,724 + PGA1_c02590 0.65 -3.6 243,813 + PGA1_c02590 0.75 -0.2 243,819 + PGA1_c02590 0.76 -2.3 243,826 + PGA1_c02590 0.77 -0.5 243,849 - PGA1_c02590 0.79 +0.4 243,864 + PGA1_c02590 0.81 -0.7 243,901 + PGA1_c02590 0.85 +2.0 243,953 + +0.3 243,973 + -0.8 243,989 + +0.7 243,989 + +0.4 244,005 - +0.4 244,023 + +1.2 244,023 + +2.4 244,023 + +0.4 244,023 + -0.8 244,031 - -1.2 244,089 + -1.2 244,102 + -0.2 244,110 - -0.5 244,164 - PGA1_c02600 0.12 -0.1 244,164 - PGA1_c02600 0.12 -1.2 244,181 + PGA1_c02600 0.14 +1.8 244,181 + PGA1_c02600 0.14 +0.8 244,181 + PGA1_c02600 0.14 +1.1 244,181 + PGA1_c02600 0.14 -1.1 244,181 + PGA1_c02600 0.14 -0.8 244,189 - PGA1_c02600 0.14 -0.2 244,211 - PGA1_c02600 0.16 +1.1 244,240 + PGA1_c02600 0.19 +0.8 244,240 + PGA1_c02600 0.19 -0.9 244,240 + PGA1_c02600 0.19 -0.7 244,240 + PGA1_c02600 0.19 -0.8 244,240 + PGA1_c02600 0.19 +0.4 244,240 + PGA1_c02600 0.19 +2.1 244,248 - PGA1_c02600 0.20 -0.7 244,251 + PGA1_c02600 0.20 +0.2 244,282 + PGA1_c02600 0.23 -1.8 244,295 - PGA1_c02600 0.24 -0.0 244,305 - PGA1_c02600 0.25 +0.1 244,306 + PGA1_c02600 0.25 +0.5 244,306 + PGA1_c02600 0.25 +1.8 244,322 - PGA1_c02600 0.27 +1.1 244,398 + PGA1_c02600 0.34 -0.7 244,398 + PGA1_c02600 0.34 +0.5 244,398 + PGA1_c02600 0.34 -0.3 244,398 + PGA1_c02600 0.34 -0.9 244,398 + PGA1_c02600 0.34 +3.1 244,398 + PGA1_c02600 0.34 -0.7 244,398 + PGA1_c02600 0.34 +1.3 244,398 + PGA1_c02600 0.34 +2.0 244,398 + PGA1_c02600 0.34 -1.3 244,398 + PGA1_c02600 0.34 -0.4 244,398 + PGA1_c02600 0.34 -2.5 244,398 + PGA1_c02600 0.34 +0.6 244,398 + PGA1_c02600 0.34 +0.1 244,398 + PGA1_c02600 0.34 +0.6 244,398 + PGA1_c02600 0.34 -0.0 244,401 - PGA1_c02600 0.34 +0.3 244,406 - PGA1_c02600 0.34 +0.4 244,406 - PGA1_c02600 0.34 +0.2 244,406 - PGA1_c02600 0.34 -0.2 244,406 - PGA1_c02600 0.34 +1.5 244,406 - PGA1_c02600 0.34 -1.7 244,419 + PGA1_c02600 0.35 -0.9 244,465 + PGA1_c02600 0.40 -0.2 244,465 + PGA1_c02600 0.40 -0.2 244,473 - PGA1_c02600 0.40 -1.1 244,473 - PGA1_c02600 0.40 -0.9 244,513 - PGA1_c02600 0.44 -0.7 244,544 - PGA1_c02600 0.47 -0.6 244,567 + PGA1_c02600 0.49 -0.4 244,577 + PGA1_c02600 0.50 -0.2 244,577 + PGA1_c02600 0.50 -0.4 244,577 + PGA1_c02600 0.50 +0.1 244,619 + PGA1_c02600 0.54 -0.6 244,657 + PGA1_c02600 0.57 +0.9 244,688 + PGA1_c02600 0.60 +1.0 244,725 - PGA1_c02600 0.64 +0.4 244,733 + PGA1_c02600 0.64 -0.1 244,737 + PGA1_c02600 0.65 +0.4 244,737 + PGA1_c02600 0.65 +0.3 244,737 + PGA1_c02600 0.65 +0.0 244,784 + PGA1_c02600 0.69 +0.9 244,803 + PGA1_c02600 0.71 -0.0 244,816 + PGA1_c02600 0.72 +0.3 244,913 + PGA1_c02600 0.81 -0.5 244,919 + PGA1_c02600 0.81 +1.2 244,919 + PGA1_c02600 0.81 +2.1 244,919 + PGA1_c02600 0.81 +0.4 244,924 + PGA1_c02600 0.82 -1.0 244,924 + PGA1_c02600 0.82 +0.8 244,927 - PGA1_c02600 0.82 -0.8 244,982 - PGA1_c02600 0.87 -0.7 244,982 - PGA1_c02600 0.87 -1.9
Or see this region's nucleotide sequence