Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0247

Experiment: Cephalothin 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0245 and Psest_0246 are separated by 15 nucleotidesPsest_0246 and Psest_0247 are separated by 14 nucleotidesPsest_0247 and Psest_0248 are separated by 129 nucleotidesPsest_0248 and Psest_0249 are separated by 175 nucleotides Psest_0245: Psest_0245 - Choline dehydrogenase and related flavoproteins, at 255,560 to 257,155 _0245 Psest_0246: Psest_0246 - hypothetical protein, at 257,171 to 257,701 _0246 Psest_0247: Psest_0247 - NAD-dependent aldehyde dehydrogenases, at 257,716 to 259,128 _0247 Psest_0248: Psest_0248 - Transcriptional regulator, at 259,258 to 259,902 _0248 Psest_0249: Psest_0249 - UDP-N-acetylglucosamine 2-epimerase, at 260,078 to 261,268 _0249 Position (kb) 257 258 259 260Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 256.981 kb on + strand, within Psest_0245at 256.995 kb on + strand, within Psest_0245at 257.735 kb on + strandat 257.735 kb on + strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.736 kb on - strandat 257.762 kb on + strandat 257.772 kb on - strandat 257.996 kb on + strand, within Psest_0247at 257.996 kb on + strand, within Psest_0247at 257.997 kb on - strand, within Psest_0247at 257.999 kb on + strand, within Psest_0247at 257.999 kb on + strand, within Psest_0247at 257.999 kb on + strand, within Psest_0247at 257.999 kb on + strand, within Psest_0247at 258.000 kb on - strand, within Psest_0247at 258.000 kb on - strand, within Psest_0247at 258.000 kb on - strand, within Psest_0247at 258.000 kb on - strand, within Psest_0247at 258.032 kb on + strand, within Psest_0247at 258.032 kb on + strand, within Psest_0247at 258.032 kb on + strand, within Psest_0247at 258.032 kb on + strand, within Psest_0247at 258.033 kb on - strand, within Psest_0247at 258.060 kb on - strand, within Psest_0247at 258.215 kb on + strand, within Psest_0247at 258.215 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.605 kb on - strand, within Psest_0247at 258.631 kb on + strand, within Psest_0247at 258.631 kb on + strand, within Psest_0247at 258.632 kb on - strand, within Psest_0247at 258.632 kb on - strand, within Psest_0247at 258.746 kb on + strand, within Psest_0247at 258.747 kb on - strand, within Psest_0247at 258.747 kb on - strand, within Psest_0247at 258.747 kb on - strand, within Psest_0247at 258.747 kb on - strand, within Psest_0247at 258.755 kb on + strand, within Psest_0247at 258.756 kb on - strand, within Psest_0247at 258.797 kb on + strand, within Psest_0247at 258.798 kb on - strand, within Psest_0247at 258.798 kb on - strand, within Psest_0247at 259.163 kb on - strandat 259.198 kb on + strandat 259.198 kb on + strandat 259.198 kb on + strandat 259.198 kb on + strandat 259.216 kb on + strandat 259.216 kb on + strandat 259.217 kb on - strandat 259.217 kb on - strandat 259.387 kb on + strand, within Psest_0248at 259.387 kb on + strand, within Psest_0248at 259.387 kb on + strand, within Psest_0248at 259.390 kb on + strand, within Psest_0248at 259.390 kb on + strand, within Psest_0248at 259.390 kb on + strand, within Psest_0248at 259.390 kb on + strand, within Psest_0248at 259.390 kb on + strand, within Psest_0248at 259.391 kb on - strand, within Psest_0248at 259.438 kb on + strand, within Psest_0248at 259.510 kb on + strand, within Psest_0248at 259.510 kb on + strand, within Psest_0248at 259.511 kb on - strand, within Psest_0248at 259.511 kb on - strand, within Psest_0248at 259.651 kb on + strand, within Psest_0248at 259.651 kb on + strand, within Psest_0248at 259.651 kb on + strand, within Psest_0248at 259.651 kb on + strand, within Psest_0248at 259.651 kb on + strand, within Psest_0248at 259.652 kb on - strand, within Psest_0248at 259.715 kb on + strand, within Psest_0248at 259.715 kb on + strand, within Psest_0248at 259.715 kb on + strand, within Psest_0248at 259.716 kb on - strand, within Psest_0248at 259.807 kb on + strand, within Psest_0248at 259.807 kb on + strand, within Psest_0248at 259.807 kb on + strand, within Psest_0248at 259.808 kb on - strand, within Psest_0248at 259.862 kb on + strandat 259.863 kb on - strandat 259.863 kb on - strandat 259.863 kb on - strandat 259.863 kb on - strandat 259.868 kb on + strandat 259.869 kb on - strandat 259.869 kb on - strandat 259.869 kb on - strandat 259.936 kb on - strandat 260.105 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml
remove
256,981 + Psest_0245 0.89 +2.1
256,995 + Psest_0245 0.90 +1.0
257,735 + +0.6
257,735 + +0.6
257,736 - -1.3
257,736 - -0.0
257,736 - +0.5
257,736 - -1.5
257,736 - -2.2
257,736 - +0.1
257,736 - +0.4
257,736 - -2.7
257,762 + +0.4
257,772 - -0.5
257,996 + Psest_0247 0.20 -1.6
257,996 + Psest_0247 0.20 +0.9
257,997 - Psest_0247 0.20 -0.3
257,999 + Psest_0247 0.20 -1.5
257,999 + Psest_0247 0.20 -1.2
257,999 + Psest_0247 0.20 +1.2
257,999 + Psest_0247 0.20 +0.3
258,000 - Psest_0247 0.20 +0.1
258,000 - Psest_0247 0.20 -1.2
258,000 - Psest_0247 0.20 -0.6
258,000 - Psest_0247 0.20 +1.4
258,032 + Psest_0247 0.22 +0.3
258,032 + Psest_0247 0.22 +0.9
258,032 + Psest_0247 0.22 +0.6
258,032 + Psest_0247 0.22 +0.5
258,033 - Psest_0247 0.22 +1.2
258,060 - Psest_0247 0.24 -1.7
258,215 + Psest_0247 0.35 +1.2
258,215 + Psest_0247 0.35 +0.3
258,356 + Psest_0247 0.45 +0.6
258,356 + Psest_0247 0.45 +0.4
258,356 + Psest_0247 0.45 -0.4
258,356 + Psest_0247 0.45 -0.6
258,356 + Psest_0247 0.45 +0.4
258,356 + Psest_0247 0.45 +2.4
258,356 + Psest_0247 0.45 +2.6
258,356 + Psest_0247 0.45 +0.4
258,356 + Psest_0247 0.45 +1.2
258,356 + Psest_0247 0.45 +0.8
258,356 + Psest_0247 0.45 +1.2
258,356 + Psest_0247 0.45 +1.8
258,356 + Psest_0247 0.45 +2.0
258,356 + Psest_0247 0.45 +1.3
258,357 - Psest_0247 0.45 +1.4
258,357 - Psest_0247 0.45 -0.4
258,357 - Psest_0247 0.45 -1.0
258,357 - Psest_0247 0.45 -0.9
258,357 - Psest_0247 0.45 +1.4
258,357 - Psest_0247 0.45 +0.8
258,357 - Psest_0247 0.45 -0.2
258,592 + Psest_0247 0.62 +1.3
258,592 + Psest_0247 0.62 +0.8
258,592 + Psest_0247 0.62 -1.7
258,592 + Psest_0247 0.62 +1.1
258,592 + Psest_0247 0.62 +0.6
258,592 + Psest_0247 0.62 +2.0
258,592 + Psest_0247 0.62 +1.5
258,593 - Psest_0247 0.62 -0.5
258,593 - Psest_0247 0.62 +1.0
258,593 - Psest_0247 0.62 +0.9
258,593 - Psest_0247 0.62 +1.0
258,593 - Psest_0247 0.62 +1.2
258,593 - Psest_0247 0.62 +0.8
258,593 - Psest_0247 0.62 +1.0
258,593 - Psest_0247 0.62 +1.2
258,605 - Psest_0247 0.63 +0.3
258,631 + Psest_0247 0.65 +0.6
258,631 + Psest_0247 0.65 +2.0
258,632 - Psest_0247 0.65 +1.7
258,632 - Psest_0247 0.65 +1.1
258,746 + Psest_0247 0.73 +0.8
258,747 - Psest_0247 0.73 +1.2
258,747 - Psest_0247 0.73 +1.2
258,747 - Psest_0247 0.73 +1.4
258,747 - Psest_0247 0.73 +0.8
258,755 + Psest_0247 0.74 +1.8
258,756 - Psest_0247 0.74 +1.4
258,797 + Psest_0247 0.77 +1.9
258,798 - Psest_0247 0.77 +1.4
258,798 - Psest_0247 0.77 +0.9
259,163 - -1.4
259,198 + +0.9
259,198 + -1.4
259,198 + +0.0
259,198 + -0.8
259,216 + -2.0
259,216 + -2.5
259,217 - -2.5
259,217 - -0.1
259,387 + Psest_0248 0.20 -0.1
259,387 + Psest_0248 0.20 -0.7
259,387 + Psest_0248 0.20 +2.0
259,390 + Psest_0248 0.20 -0.5
259,390 + Psest_0248 0.20 -1.2
259,390 + Psest_0248 0.20 -2.3
259,390 + Psest_0248 0.20 +1.2
259,390 + Psest_0248 0.20 -0.6
259,391 - Psest_0248 0.21 +0.8
259,438 + Psest_0248 0.28 +1.6
259,510 + Psest_0248 0.39 +0.4
259,510 + Psest_0248 0.39 +0.4
259,511 - Psest_0248 0.39 +0.5
259,511 - Psest_0248 0.39 -0.1
259,651 + Psest_0248 0.61 -1.1
259,651 + Psest_0248 0.61 -1.0
259,651 + Psest_0248 0.61 -2.1
259,651 + Psest_0248 0.61 +0.6
259,651 + Psest_0248 0.61 -2.3
259,652 - Psest_0248 0.61 +0.3
259,715 + Psest_0248 0.71 -0.4
259,715 + Psest_0248 0.71 -0.8
259,715 + Psest_0248 0.71 -3.3
259,716 - Psest_0248 0.71 +0.1
259,807 + Psest_0248 0.85 -2.4
259,807 + Psest_0248 0.85 -0.6
259,807 + Psest_0248 0.85 +3.5
259,808 - Psest_0248 0.85 -2.6
259,862 + -1.2
259,863 - -0.8
259,863 - -2.5
259,863 - -1.4
259,863 - -1.5
259,868 + -0.4
259,869 - -2.7
259,869 - -3.0
259,869 - -0.9
259,936 - -1.4
260,105 - -0.4

Or see this region's nucleotide sequence