Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02490 and PGA1_c02500 are separated by 7 nucleotides PGA1_c02500 and PGA1_c02510 are separated by 163 nucleotides
PGA1_c02490: PGA1_c02490 - sporulation protein R-like protein, at 232,303 to 233,781
_c02490
PGA1_c02500: PGA1_c02500 - transcriptional regulator, GntR family, at 233,789 to 234,454
_c02500
PGA1_c02510: PGA1_c02510 - S-(hydroxymethyl)glutathione dehydrogenase FrmA, at 234,618 to 235,733
_c02510
Position (kb) 233
234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 232.814 kb on - strand, within PGA1_c02490 at 232.850 kb on + strand, within PGA1_c02490 at 232.944 kb on - strand, within PGA1_c02490 at 232.946 kb on + strand, within PGA1_c02490 at 232.946 kb on + strand, within PGA1_c02490 at 232.946 kb on + strand, within PGA1_c02490 at 232.954 kb on - strand, within PGA1_c02490 at 232.954 kb on - strand, within PGA1_c02490 at 232.956 kb on + strand, within PGA1_c02490 at 232.956 kb on + strand, within PGA1_c02490 at 232.956 kb on + strand, within PGA1_c02490 at 232.956 kb on + strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.964 kb on - strand, within PGA1_c02490 at 232.968 kb on + strand, within PGA1_c02490 at 232.976 kb on - strand, within PGA1_c02490 at 232.976 kb on - strand, within PGA1_c02490 at 232.976 kb on - strand, within PGA1_c02490 at 232.976 kb on - strand, within PGA1_c02490 at 233.046 kb on + strand, within PGA1_c02490 at 233.047 kb on - strand, within PGA1_c02490 at 233.054 kb on - strand, within PGA1_c02490 at 233.054 kb on - strand, within PGA1_c02490 at 233.054 kb on - strand, within PGA1_c02490 at 233.070 kb on - strand, within PGA1_c02490 at 233.078 kb on - strand, within PGA1_c02490 at 233.093 kb on - strand, within PGA1_c02490 at 233.139 kb on - strand, within PGA1_c02490 at 233.186 kb on - strand, within PGA1_c02490 at 233.192 kb on + strand, within PGA1_c02490 at 233.196 kb on + strand, within PGA1_c02490 at 233.228 kb on + strand, within PGA1_c02490 at 233.235 kb on - strand, within PGA1_c02490 at 233.235 kb on - strand, within PGA1_c02490 at 233.242 kb on - strand, within PGA1_c02490 at 233.244 kb on + strand, within PGA1_c02490 at 233.325 kb on + strand, within PGA1_c02490 at 233.353 kb on + strand, within PGA1_c02490 at 233.426 kb on + strand, within PGA1_c02490 at 233.459 kb on - strand, within PGA1_c02490 at 233.495 kb on - strand, within PGA1_c02490 at 233.572 kb on + strand, within PGA1_c02490 at 233.603 kb on - strand, within PGA1_c02490 at 233.634 kb on + strand at 233.634 kb on + strand at 233.634 kb on + strand at 233.634 kb on + strand at 233.642 kb on - strand at 233.642 kb on - strand at 233.669 kb on - strand at 233.681 kb on + strand at 233.732 kb on + strand at 233.732 kb on + strand at 233.732 kb on + strand at 233.732 kb on + strand at 233.732 kb on + strand at 233.732 kb on + strand at 233.732 kb on + strand at 233.740 kb on - strand at 233.740 kb on - strand at 233.740 kb on - strand at 233.740 kb on - strand at 233.761 kb on - strand at 233.795 kb on + strand at 233.812 kb on - strand at 233.911 kb on + strand, within PGA1_c02500 at 234.014 kb on - strand, within PGA1_c02500 at 234.019 kb on + strand, within PGA1_c02500 at 234.034 kb on - strand, within PGA1_c02500 at 234.133 kb on + strand, within PGA1_c02500 at 234.146 kb on - strand, within PGA1_c02500 at 234.237 kb on + strand, within PGA1_c02500 at 234.245 kb on - strand, within PGA1_c02500 at 234.245 kb on - strand, within PGA1_c02500 at 234.255 kb on - strand, within PGA1_c02500 at 234.266 kb on + strand, within PGA1_c02500 at 234.271 kb on + strand, within PGA1_c02500 at 234.304 kb on + strand, within PGA1_c02500 at 234.423 kb on + strand at 234.484 kb on - strand at 234.590 kb on + strand at 234.600 kb on - strand at 234.662 kb on + strand at 234.695 kb on + strand at 234.695 kb on + strand at 234.703 kb on - strand at 234.703 kb on - strand at 234.703 kb on - strand at 234.734 kb on + strand, within PGA1_c02510 at 234.742 kb on - strand, within PGA1_c02510 at 234.742 kb on - strand, within PGA1_c02510 at 234.742 kb on - strand, within PGA1_c02510 at 234.759 kb on - strand, within PGA1_c02510 at 234.764 kb on - strand, within PGA1_c02510 at 234.819 kb on - strand, within PGA1_c02510 at 234.865 kb on - strand, within PGA1_c02510 at 234.883 kb on + strand, within PGA1_c02510 at 234.891 kb on + strand, within PGA1_c02510 at 234.949 kb on - strand, within PGA1_c02510 at 234.956 kb on - strand, within PGA1_c02510 at 234.972 kb on - strand, within PGA1_c02510 at 234.972 kb on - strand, within PGA1_c02510 at 234.972 kb on - strand, within PGA1_c02510 at 235.008 kb on - strand, within PGA1_c02510 at 235.008 kb on - strand, within PGA1_c02510 at 235.066 kb on + strand, within PGA1_c02510 at 235.074 kb on - strand, within PGA1_c02510 at 235.091 kb on + strand, within PGA1_c02510 at 235.091 kb on + strand, within PGA1_c02510 at 235.110 kb on - strand, within PGA1_c02510 at 235.186 kb on + strand, within PGA1_c02510 at 235.188 kb on + strand, within PGA1_c02510 at 235.188 kb on + strand, within PGA1_c02510 at 235.231 kb on + strand, within PGA1_c02510 at 235.242 kb on + strand, within PGA1_c02510 at 235.351 kb on + strand, within PGA1_c02510 at 235.353 kb on + strand, within PGA1_c02510 at 235.369 kb on - strand, within PGA1_c02510 at 235.369 kb on - strand, within PGA1_c02510 at 235.369 kb on - strand, within PGA1_c02510 at 235.369 kb on - strand, within PGA1_c02510 at 235.382 kb on + strand, within PGA1_c02510 at 235.390 kb on - strand, within PGA1_c02510
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 232,814 - PGA1_c02490 0.35 +0.7 232,850 + PGA1_c02490 0.37 +0.4 232,944 - PGA1_c02490 0.43 +1.2 232,946 + PGA1_c02490 0.43 -1.0 232,946 + PGA1_c02490 0.43 +2.2 232,946 + PGA1_c02490 0.43 +0.6 232,954 - PGA1_c02490 0.44 +0.3 232,954 - PGA1_c02490 0.44 -1.1 232,956 + PGA1_c02490 0.44 -0.9 232,956 + PGA1_c02490 0.44 +0.3 232,956 + PGA1_c02490 0.44 -0.1 232,956 + PGA1_c02490 0.44 +1.6 232,964 - PGA1_c02490 0.45 -0.8 232,964 - PGA1_c02490 0.45 +0.7 232,964 - PGA1_c02490 0.45 +0.6 232,964 - PGA1_c02490 0.45 -2.0 232,964 - PGA1_c02490 0.45 +0.7 232,964 - PGA1_c02490 0.45 +1.2 232,964 - PGA1_c02490 0.45 -0.8 232,964 - PGA1_c02490 0.45 -0.4 232,964 - PGA1_c02490 0.45 -2.9 232,968 + PGA1_c02490 0.45 -0.3 232,976 - PGA1_c02490 0.46 -0.8 232,976 - PGA1_c02490 0.46 +1.3 232,976 - PGA1_c02490 0.46 +0.2 232,976 - PGA1_c02490 0.46 -0.7 233,046 + PGA1_c02490 0.50 +0.9 233,047 - PGA1_c02490 0.50 +0.7 233,054 - PGA1_c02490 0.51 +1.4 233,054 - PGA1_c02490 0.51 -0.6 233,054 - PGA1_c02490 0.51 +0.9 233,070 - PGA1_c02490 0.52 +0.9 233,078 - PGA1_c02490 0.52 -1.0 233,093 - PGA1_c02490 0.53 +1.2 233,139 - PGA1_c02490 0.57 +0.5 233,186 - PGA1_c02490 0.60 -0.2 233,192 + PGA1_c02490 0.60 +0.9 233,196 + PGA1_c02490 0.60 -0.9 233,228 + PGA1_c02490 0.63 -0.8 233,235 - PGA1_c02490 0.63 +0.9 233,235 - PGA1_c02490 0.63 -1.1 233,242 - PGA1_c02490 0.63 -0.9 233,244 + PGA1_c02490 0.64 -0.8 233,325 + PGA1_c02490 0.69 -0.1 233,353 + PGA1_c02490 0.71 +1.4 233,426 + PGA1_c02490 0.76 -0.8 233,459 - PGA1_c02490 0.78 +0.2 233,495 - PGA1_c02490 0.81 +0.2 233,572 + PGA1_c02490 0.86 -0.8 233,603 - PGA1_c02490 0.88 +1.0 233,634 + +1.4 233,634 + +1.6 233,634 + +2.3 233,634 + -1.3 233,642 - -1.2 233,642 - -0.3 233,669 - +0.2 233,681 + +0.9 233,732 + +0.5 233,732 + +2.1 233,732 + -1.7 233,732 + -2.4 233,732 + +0.0 233,732 + -1.3 233,732 + +1.4 233,740 - -1.8 233,740 - +0.6 233,740 - -0.3 233,740 - -1.7 233,761 - +1.7 233,795 + -1.4 233,812 - +1.2 233,911 + PGA1_c02500 0.18 -0.3 234,014 - PGA1_c02500 0.34 -0.9 234,019 + PGA1_c02500 0.35 +0.5 234,034 - PGA1_c02500 0.37 -1.5 234,133 + PGA1_c02500 0.52 -1.5 234,146 - PGA1_c02500 0.54 -0.7 234,237 + PGA1_c02500 0.67 +0.3 234,245 - PGA1_c02500 0.68 -0.7 234,245 - PGA1_c02500 0.68 +1.4 234,255 - PGA1_c02500 0.70 -2.5 234,266 + PGA1_c02500 0.72 -1.2 234,271 + PGA1_c02500 0.72 -0.9 234,304 + PGA1_c02500 0.77 +0.2 234,423 + +1.6 234,484 - -0.7 234,590 + -1.9 234,600 - -0.7 234,662 + -1.7 234,695 + +1.8 234,695 + -2.9 234,703 - +1.2 234,703 - +0.9 234,703 - -0.1 234,734 + PGA1_c02510 0.10 -0.1 234,742 - PGA1_c02510 0.11 -0.6 234,742 - PGA1_c02510 0.11 +0.3 234,742 - PGA1_c02510 0.11 -0.4 234,759 - PGA1_c02510 0.13 +0.3 234,764 - PGA1_c02510 0.13 +0.5 234,819 - PGA1_c02510 0.18 -0.7 234,865 - PGA1_c02510 0.22 +2.2 234,883 + PGA1_c02510 0.24 -0.8 234,891 + PGA1_c02510 0.24 +0.0 234,949 - PGA1_c02510 0.30 +3.1 234,956 - PGA1_c02510 0.30 +1.0 234,972 - PGA1_c02510 0.32 +0.5 234,972 - PGA1_c02510 0.32 -0.7 234,972 - PGA1_c02510 0.32 -0.2 235,008 - PGA1_c02510 0.35 +0.3 235,008 - PGA1_c02510 0.35 +2.2 235,066 + PGA1_c02510 0.40 -2.2 235,074 - PGA1_c02510 0.41 +1.1 235,091 + PGA1_c02510 0.42 +0.3 235,091 + PGA1_c02510 0.42 -0.3 235,110 - PGA1_c02510 0.44 -0.2 235,186 + PGA1_c02510 0.51 -1.2 235,188 + PGA1_c02510 0.51 +0.6 235,188 + PGA1_c02510 0.51 -0.8 235,231 + PGA1_c02510 0.55 +1.0 235,242 + PGA1_c02510 0.56 +0.2 235,351 + PGA1_c02510 0.66 +1.4 235,353 + PGA1_c02510 0.66 +1.2 235,369 - PGA1_c02510 0.67 -0.9 235,369 - PGA1_c02510 0.67 -0.2 235,369 - PGA1_c02510 0.67 -0.3 235,369 - PGA1_c02510 0.67 -1.7 235,382 + PGA1_c02510 0.68 +0.4 235,390 - PGA1_c02510 0.69 +0.1
Or see this region's nucleotide sequence