Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2418
Experiment: Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Cephalothin 0.04 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,579,821 | + | +0.1 | |||
| 2,579,988 | - | +1.3 | |||
| 2,580,013 | - | +0.8 | |||
| 2,580,013 | - | -1.5 | |||
| 2,580,133 | + | +0.3 | |||
| 2,580,134 | - | +2.2 | |||
| 2,580,295 | - | +0.2 | |||
| 2,580,546 | + | -1.7 | |||
| 2,580,546 | + | -1.3 | |||
| 2,581,408 | + | Psest_2418 | 0.69 | +1.8 | |
| 2,581,717 | + | +0.3 | |||
| 2,581,831 | + | Psest_2419 | 0.13 | +0.7 | |
| 2,581,831 | + | Psest_2419 | 0.13 | -0.2 | |
| 2,581,832 | - | Psest_2419 | 0.13 | +0.3 | |
| 2,581,832 | - | Psest_2419 | 0.13 | -0.7 | |
| 2,582,099 | - | Psest_2419 | 0.39 | +2.7 | |
| 2,582,099 | - | Psest_2419 | 0.39 | +1.9 | |
| 2,582,099 | - | Psest_2419 | 0.39 | +0.8 | |
| 2,582,252 | - | Psest_2419 | 0.54 | +1.5 | |
| 2,582,321 | - | Psest_2419 | 0.60 | +2.6 | |
| 2,582,435 | - | Psest_2419 | 0.71 | +0.7 | |
| 2,582,435 | - | Psest_2419 | 0.71 | +1.3 | |
| 2,582,435 | - | Psest_2419 | 0.71 | +1.0 | |
| 2,582,435 | - | Psest_2419 | 0.71 | +0.5 | |
| 2,582,441 | - | Psest_2419 | 0.72 | +0.3 | |
| 2,582,590 | + | Psest_2419 | 0.86 | +0.3 | |
| 2,582,591 | - | Psest_2419 | 0.86 | -0.3 | |
| 2,582,596 | + | Psest_2419 | 0.87 | -0.0 | |
| 2,582,596 | + | Psest_2419 | 0.87 | +2.3 |
Or see this region's nucleotide sequence