Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19240

Experiment: m.b. Sisomicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Sisomicin 0.005 mg/ml
1,996,244	+		PGA1_c19230	0.15	-0.6
1,996,365	+		PGA1_c19230	0.27	+2.1
1,996,433	+		PGA1_c19230	0.34	+0.4
1,996,437	-		PGA1_c19230	0.35	+1.5
1,996,441	-		PGA1_c19230	0.35	+1.9
1,996,602	-		PGA1_c19230	0.51	+2.0
1,996,678	-		PGA1_c19230	0.59	+1.1
1,996,688	-		PGA1_c19230	0.60	+2.6
1,996,761	+		PGA1_c19230	0.67	+2.1
1,996,762	+		PGA1_c19230	0.67	+3.9
1,996,770	-		PGA1_c19230	0.68	+2.5
1,996,781	-		PGA1_c19230	0.69	+0.4
1,996,862	+		PGA1_c19230	0.77	+0.9
1,996,862	+		PGA1_c19230	0.77	+1.3
1,996,870	-		PGA1_c19230	0.78	+1.0
1,996,870	-		PGA1_c19230	0.78	+0.6
1,996,937	+		PGA1_c19230	0.84	+2.0
1,996,976	+		PGA1_c19230	0.88	+2.6
1,997,008	+				+2.2
1,997,197	+				-0.2
1,997,242	-				+1.0
1,997,254	-				+1.2
1,997,254	-				+0.3
1,997,269	-				-0.4
1,997,280	+				-2.0
1,997,309	-				+0.0
1,997,309	-				+0.4
1,997,369	+		PGA1_c19240	0.14	+1.1
1,997,377	+		PGA1_c19240	0.15	+2.0
1,997,421	+		PGA1_c19240	0.19	+1.4
1,997,423	-		PGA1_c19240	0.19	+1.8
1,997,509	-		PGA1_c19240	0.26	-0.1
1,997,523	+		PGA1_c19240	0.27	+0.3
1,997,523	+		PGA1_c19240	0.27	+0.6
1,997,546	-		PGA1_c19240	0.29	-0.6
1,997,551	-		PGA1_c19240	0.30	+0.7
1,997,582	+		PGA1_c19240	0.32	-0.3
1,997,587	-		PGA1_c19240	0.33	+0.6
1,997,595	-		PGA1_c19240	0.34	+0.7
1,997,597	+		PGA1_c19240	0.34	+1.3
1,997,598	-		PGA1_c19240	0.34	-0.6
1,997,605	-		PGA1_c19240	0.34	-2.8
1,997,605	-		PGA1_c19240	0.34	-0.4
1,997,605	-		PGA1_c19240	0.34	-0.1
1,997,605	-		PGA1_c19240	0.34	-0.7
1,997,605	-		PGA1_c19240	0.34	+2.1
1,997,607	+		PGA1_c19240	0.35	+1.7
1,997,607	+		PGA1_c19240	0.35	+0.5
1,997,615	-		PGA1_c19240	0.35	+0.2
1,997,637	+		PGA1_c19240	0.37	+1.6
1,997,637	+		PGA1_c19240	0.37	+0.4
1,997,645	-		PGA1_c19240	0.38	+2.0
1,997,656	-		PGA1_c19240	0.39	-1.2
1,997,656	-		PGA1_c19240	0.39	+0.8
1,997,692	-		PGA1_c19240	0.42	-0.3
1,997,693	-		PGA1_c19240	0.42	-1.6
1,997,720	+		PGA1_c19240	0.44	-0.3
1,997,792	+		PGA1_c19240	0.51	-1.6
1,997,830	-		PGA1_c19240	0.54	-0.1
1,997,876	+		PGA1_c19240	0.58	-1.6
1,997,880	+		PGA1_c19240	0.58	+0.5
1,997,921	-		PGA1_c19240	0.62	+1.4
1,997,973	+		PGA1_c19240	0.66	-1.0
1,997,980	+		PGA1_c19240	0.67	+1.9
1,997,988	-		PGA1_c19240	0.67	-0.7
1,997,989	+		PGA1_c19240	0.68	+2.2
1,998,011	+		PGA1_c19240	0.69	-1.2
1,998,068	-		PGA1_c19240	0.74	+1.8
1,998,075	+		PGA1_c19240	0.75	+0.3
1,998,078	-		PGA1_c19240	0.75	-0.4
1,998,083	-		PGA1_c19240	0.76	+0.5
1,998,129	-		PGA1_c19240	0.80	+0.0
1,998,129	-		PGA1_c19240	0.80	+0.3
1,998,196	-		PGA1_c19240	0.85	-0.3
1,998,214	-		PGA1_c19240	0.87	+0.5
1,998,229	+		PGA1_c19240	0.88	-1.1
1,998,237	-		PGA1_c19240	0.89	+1.9
1,998,247	-		PGA1_c19240	0.90	-0.0
1,998,304	+				-0.7
1,998,312	-				+0.1
1,998,329	+				+1.8
1,998,374	+				-1.6
1,998,410	+				+0.7
1,998,410	+				+1.2
1,998,410	+				-1.8
1,998,410	+				+0.7
1,998,418	-				-0.2
1,998,427	+				+0.2
1,998,434	-				-0.2
1,998,436	+				-0.5
1,998,436	+				-1.6
1,998,467	-				+0.7
1,998,486	+				-0.7
1,998,486	+				+0.8
1,998,486	+				-1.7
1,998,486	+				+2.1
1,998,486	+				-0.6
1,998,486	+				+1.6
1,998,486	+				+0.2
1,998,486	+				+0.3
1,998,486	+				+0.4
1,998,486	+				-0.5
1,998,486	+				+1.2
1,998,494	-				+0.1
1,998,494	-				+1.0
1,998,494	-				+0.8
1,998,494	-				-0.5
1,998,494	-				+0.2
1,998,494	-				-1.8
1,998,494	-				-1.0
1,998,572	-				-1.6
1,998,580	+				-0.4
1,998,580	+				+1.0
1,998,581	+				-1.0
1,998,581	+				-0.5
1,998,581	+				+1.0
1,998,582	+				+0.8
1,998,589	-				-0.9
1,998,591	+				-1.5
1,998,610	-				+1.6
1,998,625	-				+0.5
1,998,636	+				-2.1
1,998,646	+				+0.0
1,998,646	+				+1.7
1,998,646	+				-0.2
1,998,646	+				-0.8
1,998,646	+				-0.3
1,998,646	+				+0.0
1,998,647	+				+0.0
1,998,654	-				-2.7
1,998,654	-				+0.1
1,998,656	+				+0.2
1,998,664	-				+0.9
1,998,664	-				-0.1
1,998,664	-				+0.3
1,998,748	-		PGA1_c19260	0.26	+1.7
1,998,755	+		PGA1_c19260	0.28	+2.0
1,998,755	+		PGA1_c19260	0.28	+0.4
1,998,770	+		PGA1_c19260	0.31	+0.2
1,998,777	+		PGA1_c19260	0.32	-0.1
1,998,805	+		PGA1_c19260	0.38	-2.8
1,998,813	-		PGA1_c19260	0.40	+0.8
1,998,813	-		PGA1_c19260	0.40	-0.2
1,998,813	-		PGA1_c19260	0.40	-0.6
1,998,813	-		PGA1_c19260	0.40	+1.4
1,998,815	+		PGA1_c19260	0.40	-0.6
1,998,815	+		PGA1_c19260	0.40	+1.4
1,998,815	+		PGA1_c19260	0.40	+0.2
1,998,823	-		PGA1_c19260	0.42	+0.2
1,998,823	-		PGA1_c19260	0.42	+0.5
1,998,827	+		PGA1_c19260	0.43	+0.3
1,998,851	+		PGA1_c19260	0.48	+0.5
1,998,851	+		PGA1_c19260	0.48	-0.7
1,998,851	+		PGA1_c19260	0.48	-2.7
1,998,851	+		PGA1_c19260	0.48	-1.1
1,998,851	+		PGA1_c19260	0.48	-0.7
1,998,859	-		PGA1_c19260	0.50	+0.2
1,998,859	-		PGA1_c19260	0.50	+0.0
1,998,859	-		PGA1_c19260	0.50	+0.4
1,998,859	-		PGA1_c19260	0.50	+1.3
1,998,879	-		PGA1_c19260	0.54	-2.1
1,998,883	-		PGA1_c19260	0.55	-1.6
1,998,883	-		PGA1_c19260	0.55	+0.3
1,998,893	-		PGA1_c19260	0.57	+0.1
1,998,894	+		PGA1_c19260	0.57	-1.6
1,998,897	-		PGA1_c19260	0.58	-1.0
1,998,910	+		PGA1_c19260	0.60	-2.4
1,998,910	+		PGA1_c19260	0.60	-2.0
1,998,910	+		PGA1_c19260	0.60	+0.3
1,998,910	+		PGA1_c19260	0.60	+1.6
1,998,910	+		PGA1_c19260	0.60	+0.6
1,998,910	+		PGA1_c19260	0.60	+1.8
1,998,910	+		PGA1_c19260	0.60	+2.7
1,998,910	+		PGA1_c19260	0.60	+2.1
1,998,910	+		PGA1_c19260	0.60	-2.7
1,998,910	+		PGA1_c19260	0.60	+1.5
1,998,910	+		PGA1_c19260	0.60	-0.9
1,998,910	+		PGA1_c19260	0.60	+2.4
1,998,910	+		PGA1_c19260	0.60	-0.3
1,998,910	+		PGA1_c19260	0.60	-0.8
1,998,917	-		PGA1_c19260	0.62	-1.2
1,998,918	-		PGA1_c19260	0.62	+1.5
1,998,920	+		PGA1_c19260	0.62	-1.0
1,998,920	+		PGA1_c19260	0.62	-1.4
1,998,920	+		PGA1_c19260	0.62	-0.3
1,998,920	+		PGA1_c19260	0.62	-1.9
1,998,920	+		PGA1_c19260	0.62	+1.4
1,998,929	+		PGA1_c19260	0.64	-1.5
1,998,983	+		PGA1_c19260	0.76	-0.1
1,998,985	+		PGA1_c19260	0.76	+2.2
1,998,991	-		PGA1_c19260	0.77	+0.0
1,998,993	-		PGA1_c19260	0.78	+0.7
1,998,998	+		PGA1_c19260	0.79	-0.8
1,998,998	+		PGA1_c19260	0.79	-2.0
1,998,998	+		PGA1_c19260	0.79	+1.0
1,999,006	-		PGA1_c19260	0.81	-2.3
1,999,008	+		PGA1_c19260	0.81	+0.9
1,999,016	-		PGA1_c19260	0.83	-0.2
1,999,037	-		PGA1_c19260	0.87	+0.3
1,999,037	-		PGA1_c19260	0.87	-1.7
1,999,037	-		PGA1_c19260	0.87	+0.9
1,999,048	+		PGA1_c19260	0.89	+0.1
1,999,056	-				+0.1
1,999,057	+				-1.4
1,999,065	-				-0.3
1,999,091	+				-0.6
1,999,092	-				+0.3
1,999,093	-				+0.7
1,999,093	-				-0.9
1,999,104	+				-0.7
1,999,109	+				+0.9
1,999,109	+				+0.2
1,999,109	+				-0.3
1,999,109	+				+1.0
1,999,109	+				+0.4
1,999,109	+				-0.5
1,999,112	-				+0.2
1,999,112	-				+0.9
1,999,117	-				-1.0
1,999,117	-				+0.4
1,999,117	-				+0.4
1,999,117	-				+0.3
1,999,117	-				+0.4
1,999,117	-				+1.4
1,999,117	-				-3.1
1,999,117	-				-1.0
1,999,117	-				+0.9
1,999,117	-				-2.1
1,999,117	-				-0.1
1,999,117	-				-1.1
1,999,117	-				+0.6
1,999,132	-				+0.5
1,999,143	+				-1.4
1,999,151	-				+0.6
1,999,170	+				-0.6
1,999,176	+				+0.1
1,999,183	+				-0.8
1,999,205	-				+0.5
1,999,214	+				-1.7
1,999,214	+				+0.5
1,999,215	+				+1.9
1,999,220	-				+1.0
1,999,225	+				-0.3
1,999,237	-				+1.1
1,999,277	+				+1.7
1,999,285	-				+2.0
1,999,298	+				+1.7
1,999,299	+				+1.6
1,999,299	+				-2.8
1,999,299	+				+1.8
1,999,299	+				-1.4
1,999,299	+				-0.2
1,999,299	+				+0.3
1,999,306	-				+0.2
1,999,307	-				+0.9
1,999,307	-				+2.5
1,999,307	-				-0.4
1,999,307	-				-0.4
1,999,307	-				+0.4
1,999,340	-				-2.1
1,999,340	-				-1.8
1,999,342	+				+0.3
1,999,346	+				-0.4
1,999,350	+				+0.3
1,999,357	-				-1.6
1,999,358	-				-0.2
1,999,358	-				+1.3
1,999,358	-				-1.0