Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01760 and PGA1_c01770 are separated by 168 nucleotides PGA1_c01770 and PGA1_c01780 are separated by 12 nucleotides PGA1_c01780 and PGA1_c01790 are separated by 12 nucleotides PGA1_c01790 and PGA1_c01800 are separated by 0 nucleotides PGA1_c01800 and PGA1_c01810 are separated by 208 nucleotides
PGA1_c01760: PGA1_c01760 - 50S ribosomal protein L18, at 162,966 to 163,325
_c01760
PGA1_c01770: PGA1_c01770 - 30S ribosomal protein S5, at 163,494 to 164,060
_c01770
PGA1_c01780: PGA1_c01780 - 50S ribosomal protein L30, at 164,073 to 164,261
_c01780
PGA1_c01790: PGA1_c01790 - hypothetical protein, at 164,274 to 164,468
_c01790
PGA1_c01800: PGA1_c01800 - hypothetical protein, at 164,469 to 164,687
_c01800
PGA1_c01810: PGA1_c01810 - putative transcriptional regulator, GntR family, at 164,896 to 166,308
_c01810
Position (kb) 164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 164.341 kb on - strand, within PGA1_c01790 at 164.439 kb on + strand, within PGA1_c01790 at 164.442 kb on - strand, within PGA1_c01790 at 164.442 kb on - strand, within PGA1_c01790 at 164.447 kb on - strand, within PGA1_c01790 at 164.447 kb on - strand, within PGA1_c01790 at 164.457 kb on - strand at 164.489 kb on + strand at 164.497 kb on - strand, within PGA1_c01800 at 164.502 kb on - strand, within PGA1_c01800 at 164.504 kb on + strand, within PGA1_c01800 at 164.504 kb on + strand, within PGA1_c01800 at 164.504 kb on + strand, within PGA1_c01800 at 164.504 kb on + strand, within PGA1_c01800 at 164.512 kb on - strand, within PGA1_c01800 at 164.512 kb on - strand, within PGA1_c01800 at 164.512 kb on - strand, within PGA1_c01800 at 164.512 kb on - strand, within PGA1_c01800 at 164.567 kb on + strand, within PGA1_c01800 at 164.608 kb on + strand, within PGA1_c01800 at 164.626 kb on - strand, within PGA1_c01800 at 164.648 kb on + strand, within PGA1_c01800 at 164.671 kb on + strand at 164.671 kb on + strand at 164.761 kb on + strand at 164.785 kb on - strand at 164.798 kb on + strand at 164.806 kb on - strand at 164.853 kb on + strand at 164.859 kb on - strand at 164.889 kb on + strand at 164.899 kb on + strand at 164.902 kb on - strand at 164.907 kb on - strand at 164.918 kb on - strand at 164.948 kb on + strand at 164.958 kb on - strand at 165.015 kb on + strand at 165.055 kb on + strand, within PGA1_c01810 at 165.070 kb on - strand, within PGA1_c01810 at 165.072 kb on + strand, within PGA1_c01810 at 165.124 kb on + strand, within PGA1_c01810 at 165.132 kb on - strand, within PGA1_c01810 at 165.137 kb on - strand, within PGA1_c01810 at 165.137 kb on - strand, within PGA1_c01810 at 165.189 kb on - strand, within PGA1_c01810 at 165.194 kb on - strand, within PGA1_c01810 at 165.199 kb on - strand, within PGA1_c01810 at 165.221 kb on - strand, within PGA1_c01810
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 164,341 - PGA1_c01790 0.34 +1.4 164,439 + PGA1_c01790 0.85 -0.2 164,442 - PGA1_c01790 0.86 +0.9 164,442 - PGA1_c01790 0.86 -0.3 164,447 - PGA1_c01790 0.89 +4.8 164,447 - PGA1_c01790 0.89 -0.7 164,457 - +0.7 164,489 + +1.1 164,497 - PGA1_c01800 0.13 +0.9 164,502 - PGA1_c01800 0.15 +0.7 164,504 + PGA1_c01800 0.16 +3.1 164,504 + PGA1_c01800 0.16 +0.7 164,504 + PGA1_c01800 0.16 +1.1 164,504 + PGA1_c01800 0.16 +0.1 164,512 - PGA1_c01800 0.20 +0.6 164,512 - PGA1_c01800 0.20 +0.4 164,512 - PGA1_c01800 0.20 +0.2 164,512 - PGA1_c01800 0.20 +0.8 164,567 + PGA1_c01800 0.45 -0.9 164,608 + PGA1_c01800 0.63 +0.5 164,626 - PGA1_c01800 0.72 +0.4 164,648 + PGA1_c01800 0.82 +0.5 164,671 + +0.7 164,671 + +0.4 164,761 + -0.5 164,785 - -2.8 164,798 + +0.5 164,806 - +0.3 164,853 + +1.6 164,859 - +1.1 164,889 + -0.6 164,899 + -0.2 164,902 - +0.5 164,907 - -0.7 164,918 - +0.9 164,948 + -0.5 164,958 - -1.2 165,015 + -1.0 165,055 + PGA1_c01810 0.11 -1.0 165,070 - PGA1_c01810 0.12 +0.0 165,072 + PGA1_c01810 0.12 +1.0 165,124 + PGA1_c01810 0.16 -0.1 165,132 - PGA1_c01810 0.17 -0.9 165,137 - PGA1_c01810 0.17 +0.3 165,137 - PGA1_c01810 0.17 +1.2 165,189 - PGA1_c01810 0.21 +1.5 165,194 - PGA1_c01810 0.21 +0.1 165,199 - PGA1_c01810 0.21 -2.3 165,221 - PGA1_c01810 0.23 -1.3
Or see this region's nucleotide sequence