Experiment: m.b. Sisomicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15470 and PGA1_c15480 are separated by 11 nucleotides PGA1_c15480 and PGA1_c15490 are separated by 194 nucleotides PGA1_c15490 and PGA1_c15500 are separated by 110 nucleotides
PGA1_c15470: PGA1_c15470 - 50S ribosomal protein L21, at 1,610,483 to 1,611,073
_c15470
PGA1_c15480: PGA1_c15480 - 50S ribosomal protein L27, at 1,611,085 to 1,611,354
_c15480
PGA1_c15490: PGA1_c15490 - putative N-acetyltransferase, at 1,611,549 to 1,612,088
_c15490
PGA1_c15500: PGA1_c15500 - GTP-binding protein, at 1,612,199 to 1,613,233
_c15500
Position (kb)
1611
1612
1613 Strain fitness (log2 ratio)
-1
0
1
2 at 1611.453 kb on + strand at 1611.461 kb on - strand at 1611.469 kb on + strand at 1611.471 kb on + strand at 1611.539 kb on + strand at 1611.546 kb on + strand at 1611.553 kb on - strand at 1611.576 kb on - strand at 1611.622 kb on + strand, within PGA1_c15490 at 1611.682 kb on - strand, within PGA1_c15490 at 1611.687 kb on + strand, within PGA1_c15490 at 1611.764 kb on - strand, within PGA1_c15490 at 1611.798 kb on + strand, within PGA1_c15490 at 1611.806 kb on - strand, within PGA1_c15490 at 1611.814 kb on - strand, within PGA1_c15490 at 1611.827 kb on + strand, within PGA1_c15490 at 1611.892 kb on + strand, within PGA1_c15490 at 1611.892 kb on + strand, within PGA1_c15490 at 1611.900 kb on - strand, within PGA1_c15490 at 1611.900 kb on - strand, within PGA1_c15490 at 1611.953 kb on - strand, within PGA1_c15490 at 1611.990 kb on - strand, within PGA1_c15490 at 1611.995 kb on - strand, within PGA1_c15490 at 1611.995 kb on - strand, within PGA1_c15490 at 1612.023 kb on + strand, within PGA1_c15490 at 1612.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml remove 1,611,453 + +0.4 1,611,461 - +0.9 1,611,469 + -0.3 1,611,471 + +1.4 1,611,539 + +0.2 1,611,546 + -0.2 1,611,553 - +0.5 1,611,576 - -0.0 1,611,622 + PGA1_c15490 0.14 +0.3 1,611,682 - PGA1_c15490 0.25 -1.0 1,611,687 + PGA1_c15490 0.26 -0.2 1,611,764 - PGA1_c15490 0.40 +2.4 1,611,798 + PGA1_c15490 0.46 +1.0 1,611,806 - PGA1_c15490 0.48 +1.0 1,611,814 - PGA1_c15490 0.49 -0.4 1,611,827 + PGA1_c15490 0.51 +1.4 1,611,892 + PGA1_c15490 0.64 +0.4 1,611,892 + PGA1_c15490 0.64 +1.0 1,611,900 - PGA1_c15490 0.65 +0.0 1,611,900 - PGA1_c15490 0.65 +1.2 1,611,953 - PGA1_c15490 0.75 +1.3 1,611,990 - PGA1_c15490 0.82 +1.4 1,611,995 - PGA1_c15490 0.83 +1.5 1,611,995 - PGA1_c15490 0.83 +0.6 1,612,023 + PGA1_c15490 0.88 +1.8 1,612,070 - +0.8
Or see this region's nucleotide sequence