Experiment: Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1441 and Psest_1442 are separated by 47 nucleotides Psest_1442 and Psest_1443 are separated by 230 nucleotides
Psest_1441: Psest_1441 - Curlin associated repeat., at 1,551,536 to 1,552,822
_1441
Psest_1442: Psest_1442 - Curlin associated repeat., at 1,552,870 to 1,553,367
_1442
Psest_1443: Psest_1443 - Uncharacterized protein involved in formation of curli polymers, at 1,553,598 to 1,554,428
_1443
Position (kb)
1552
1553
1554 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1551.894 kb on + strand, within Psest_1441 at 1551.894 kb on + strand, within Psest_1441 at 1551.894 kb on + strand, within Psest_1441 at 1551.894 kb on + strand, within Psest_1441 at 1552.104 kb on + strand, within Psest_1441 at 1552.104 kb on + strand, within Psest_1441 at 1552.104 kb on + strand, within Psest_1441 at 1552.104 kb on + strand, within Psest_1441 at 1552.105 kb on - strand, within Psest_1441 at 1552.105 kb on - strand, within Psest_1441 at 1552.105 kb on - strand, within Psest_1441 at 1552.105 kb on - strand, within Psest_1441 at 1552.125 kb on + strand, within Psest_1441 at 1552.125 kb on + strand, within Psest_1441 at 1552.125 kb on + strand, within Psest_1441 at 1552.125 kb on + strand, within Psest_1441 at 1552.125 kb on + strand, within Psest_1441 at 1552.125 kb on + strand, within Psest_1441 at 1552.125 kb on + strand, within Psest_1441 at 1552.125 kb on + strand, within Psest_1441 at 1552.125 kb on + strand, within Psest_1441 at 1552.125 kb on + strand, within Psest_1441 at 1552.126 kb on - strand, within Psest_1441 at 1552.126 kb on - strand, within Psest_1441 at 1552.126 kb on - strand, within Psest_1441 at 1552.126 kb on - strand, within Psest_1441 at 1552.126 kb on - strand, within Psest_1441 at 1552.344 kb on + strand, within Psest_1441 at 1552.371 kb on + strand, within Psest_1441 at 1552.371 kb on + strand, within Psest_1441 at 1552.371 kb on + strand, within Psest_1441 at 1552.372 kb on - strand, within Psest_1441 at 1552.372 kb on - strand, within Psest_1441 at 1552.482 kb on + strand, within Psest_1441 at 1552.482 kb on + strand, within Psest_1441 at 1552.482 kb on + strand, within Psest_1441 at 1552.482 kb on + strand, within Psest_1441 at 1552.482 kb on + strand, within Psest_1441 at 1552.482 kb on + strand, within Psest_1441 at 1552.482 kb on + strand, within Psest_1441 at 1552.482 kb on + strand, within Psest_1441 at 1552.483 kb on - strand, within Psest_1441 at 1552.483 kb on - strand, within Psest_1441 at 1552.483 kb on - strand, within Psest_1441 at 1552.499 kb on + strand, within Psest_1441 at 1552.799 kb on + strand at 1552.800 kb on - strand at 1552.800 kb on - strand at 1552.845 kb on + strand at 1552.845 kb on + strand at 1552.845 kb on + strand at 1552.845 kb on + strand at 1552.846 kb on - strand at 1552.846 kb on - strand at 1552.846 kb on - strand at 1552.846 kb on - strand at 1552.846 kb on - strand at 1552.846 kb on - strand at 1552.846 kb on - strand at 1552.849 kb on + strand at 1552.849 kb on + strand at 1552.849 kb on + strand at 1552.857 kb on + strand at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.120 kb on + strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.121 kb on - strand, within Psest_1442 at 1553.245 kb on + strand, within Psest_1442 at 1553.245 kb on + strand, within Psest_1442 at 1553.245 kb on + strand, within Psest_1442 at 1553.246 kb on - strand, within Psest_1442 at 1553.246 kb on - strand, within Psest_1442 at 1553.246 kb on - strand, within Psest_1442 at 1553.297 kb on + strand, within Psest_1442 at 1553.319 kb on + strand at 1553.342 kb on + strand at 1553.342 kb on + strand at 1553.343 kb on - strand at 1553.343 kb on - strand at 1553.343 kb on - strand at 1553.383 kb on + strand at 1553.401 kb on + strand at 1553.401 kb on + strand at 1553.401 kb on + strand at 1553.401 kb on + strand at 1553.401 kb on + strand at 1553.401 kb on + strand at 1553.401 kb on + strand at 1553.401 kb on + strand at 1553.401 kb on + strand at 1553.401 kb on + strand at 1553.402 kb on - strand at 1553.402 kb on - strand at 1553.402 kb on - strand at 1553.402 kb on - strand at 1553.402 kb on - strand at 1553.402 kb on - strand at 1553.402 kb on - strand at 1553.402 kb on - strand at 1553.402 kb on - strand at 1553.618 kb on - strand at 1553.618 kb on - strand at 1553.618 kb on - strand at 1553.803 kb on + strand, within Psest_1443 at 1553.803 kb on + strand, within Psest_1443 at 1553.804 kb on - strand, within Psest_1443 at 1553.804 kb on - strand, within Psest_1443 at 1553.826 kb on - strand, within Psest_1443 at 1553.920 kb on + strand, within Psest_1443 at 1553.921 kb on - strand, within Psest_1443 at 1554.053 kb on + strand, within Psest_1443 at 1554.232 kb on + strand, within Psest_1443 at 1554.313 kb on + strand, within Psest_1443 at 1554.313 kb on + strand, within Psest_1443 at 1554.313 kb on + strand, within Psest_1443 at 1554.314 kb on - strand, within Psest_1443 at 1554.314 kb on - strand, within Psest_1443 at 1554.314 kb on - strand, within Psest_1443 at 1554.314 kb on - strand, within Psest_1443
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml remove 1,551,894 + Psest_1441 0.28 +1.6 1,551,894 + Psest_1441 0.28 +2.6 1,551,894 + Psest_1441 0.28 +0.5 1,551,894 + Psest_1441 0.28 +2.3 1,552,104 + Psest_1441 0.44 +1.2 1,552,104 + Psest_1441 0.44 +2.9 1,552,104 + Psest_1441 0.44 -0.2 1,552,104 + Psest_1441 0.44 +0.9 1,552,105 - Psest_1441 0.44 +0.1 1,552,105 - Psest_1441 0.44 -1.7 1,552,105 - Psest_1441 0.44 +2.2 1,552,105 - Psest_1441 0.44 -0.1 1,552,125 + Psest_1441 0.46 +0.7 1,552,125 + Psest_1441 0.46 +1.6 1,552,125 + Psest_1441 0.46 +0.0 1,552,125 + Psest_1441 0.46 +0.0 1,552,125 + Psest_1441 0.46 +0.1 1,552,125 + Psest_1441 0.46 -1.9 1,552,125 + Psest_1441 0.46 +1.3 1,552,125 + Psest_1441 0.46 +2.4 1,552,125 + Psest_1441 0.46 +0.3 1,552,125 + Psest_1441 0.46 +0.3 1,552,126 - Psest_1441 0.46 +0.5 1,552,126 - Psest_1441 0.46 -0.5 1,552,126 - Psest_1441 0.46 +0.0 1,552,126 - Psest_1441 0.46 -0.6 1,552,126 - Psest_1441 0.46 -0.8 1,552,344 + Psest_1441 0.63 +0.9 1,552,371 + Psest_1441 0.65 -0.2 1,552,371 + Psest_1441 0.65 +1.0 1,552,371 + Psest_1441 0.65 +1.5 1,552,372 - Psest_1441 0.65 -1.9 1,552,372 - Psest_1441 0.65 -1.3 1,552,482 + Psest_1441 0.74 +0.6 1,552,482 + Psest_1441 0.74 +0.0 1,552,482 + Psest_1441 0.74 -0.5 1,552,482 + Psest_1441 0.74 -0.3 1,552,482 + Psest_1441 0.74 +1.3 1,552,482 + Psest_1441 0.74 -0.6 1,552,482 + Psest_1441 0.74 +0.1 1,552,482 + Psest_1441 0.74 +0.4 1,552,483 - Psest_1441 0.74 -0.5 1,552,483 - Psest_1441 0.74 -2.9 1,552,483 - Psest_1441 0.74 -1.1 1,552,499 + Psest_1441 0.75 -0.0 1,552,799 + +1.2 1,552,800 - -0.5 1,552,800 - -1.0 1,552,845 + -1.3 1,552,845 + +1.0 1,552,845 + +1.5 1,552,845 + +0.3 1,552,846 - +0.6 1,552,846 - -0.7 1,552,846 - -1.1 1,552,846 - -1.3 1,552,846 - -1.7 1,552,846 - -1.5 1,552,846 - +1.2 1,552,849 + +1.7 1,552,849 + -0.2 1,552,849 + -0.5 1,552,857 + +1.2 1,553,120 + Psest_1442 0.50 -0.5 1,553,120 + Psest_1442 0.50 -1.0 1,553,120 + Psest_1442 0.50 +2.3 1,553,120 + Psest_1442 0.50 +0.0 1,553,120 + Psest_1442 0.50 +0.1 1,553,120 + Psest_1442 0.50 +0.1 1,553,120 + Psest_1442 0.50 +0.1 1,553,120 + Psest_1442 0.50 +1.3 1,553,120 + Psest_1442 0.50 +0.5 1,553,120 + Psest_1442 0.50 +1.5 1,553,120 + Psest_1442 0.50 -0.9 1,553,120 + Psest_1442 0.50 -1.1 1,553,120 + Psest_1442 0.50 -0.5 1,553,120 + Psest_1442 0.50 +0.0 1,553,120 + Psest_1442 0.50 -1.5 1,553,120 + Psest_1442 0.50 -0.3 1,553,120 + Psest_1442 0.50 +1.3 1,553,120 + Psest_1442 0.50 +1.0 1,553,120 + Psest_1442 0.50 -0.8 1,553,120 + Psest_1442 0.50 +0.9 1,553,120 + Psest_1442 0.50 +0.2 1,553,120 + Psest_1442 0.50 +0.9 1,553,120 + Psest_1442 0.50 -1.0 1,553,120 + Psest_1442 0.50 -1.0 1,553,120 + Psest_1442 0.50 +1.0 1,553,120 + Psest_1442 0.50 +2.0 1,553,120 + Psest_1442 0.50 +1.5 1,553,120 + Psest_1442 0.50 -0.5 1,553,120 + Psest_1442 0.50 +0.7 1,553,120 + Psest_1442 0.50 +0.0 1,553,120 + Psest_1442 0.50 +1.0 1,553,120 + Psest_1442 0.50 +0.7 1,553,120 + Psest_1442 0.50 +0.3 1,553,120 + Psest_1442 0.50 +0.6 1,553,120 + Psest_1442 0.50 +0.7 1,553,120 + Psest_1442 0.50 +0.9 1,553,120 + Psest_1442 0.50 -0.5 1,553,120 + Psest_1442 0.50 +1.6 1,553,121 - Psest_1442 0.50 +0.9 1,553,121 - Psest_1442 0.50 +0.2 1,553,121 - Psest_1442 0.50 +0.0 1,553,121 - Psest_1442 0.50 +0.7 1,553,121 - Psest_1442 0.50 -1.0 1,553,121 - Psest_1442 0.50 +0.5 1,553,121 - Psest_1442 0.50 +0.2 1,553,121 - Psest_1442 0.50 +0.6 1,553,121 - Psest_1442 0.50 +0.2 1,553,121 - Psest_1442 0.50 -0.3 1,553,121 - Psest_1442 0.50 -1.7 1,553,121 - Psest_1442 0.50 -0.0 1,553,121 - Psest_1442 0.50 -0.3 1,553,121 - Psest_1442 0.50 +0.0 1,553,121 - Psest_1442 0.50 +0.5 1,553,121 - Psest_1442 0.50 -0.3 1,553,121 - Psest_1442 0.50 +0.4 1,553,121 - Psest_1442 0.50 +0.0 1,553,121 - Psest_1442 0.50 +0.4 1,553,121 - Psest_1442 0.50 +1.4 1,553,121 - Psest_1442 0.50 +0.3 1,553,121 - Psest_1442 0.50 +1.5 1,553,245 + Psest_1442 0.75 +1.3 1,553,245 + Psest_1442 0.75 +1.2 1,553,245 + Psest_1442 0.75 -0.2 1,553,246 - Psest_1442 0.76 +2.7 1,553,246 - Psest_1442 0.76 -0.1 1,553,246 - Psest_1442 0.76 -0.5 1,553,297 + Psest_1442 0.86 -0.3 1,553,319 + -2.6 1,553,342 + +0.7 1,553,342 + +1.2 1,553,343 - -0.7 1,553,343 - -1.1 1,553,343 - +0.4 1,553,383 + +0.5 1,553,401 + +1.6 1,553,401 + +0.3 1,553,401 + -2.1 1,553,401 + +0.6 1,553,401 + -0.0 1,553,401 + +1.3 1,553,401 + -1.0 1,553,401 + -1.4 1,553,401 + +1.2 1,553,401 + +1.1 1,553,402 - -1.3 1,553,402 - +1.0 1,553,402 - +0.2 1,553,402 - -2.3 1,553,402 - -0.3 1,553,402 - -1.2 1,553,402 - -0.5 1,553,402 - +1.0 1,553,402 - -0.3 1,553,618 - -1.3 1,553,618 - -1.5 1,553,618 - +1.6 1,553,803 + Psest_1443 0.25 +0.4 1,553,803 + Psest_1443 0.25 +1.6 1,553,804 - Psest_1443 0.25 +1.7 1,553,804 - Psest_1443 0.25 +1.4 1,553,826 - Psest_1443 0.27 +1.4 1,553,920 + Psest_1443 0.39 -0.1 1,553,921 - Psest_1443 0.39 +1.2 1,554,053 + Psest_1443 0.55 +0.6 1,554,232 + Psest_1443 0.76 +1.5 1,554,313 + Psest_1443 0.86 +0.2 1,554,313 + Psest_1443 0.86 +0.5 1,554,313 + Psest_1443 0.86 -1.3 1,554,314 - Psest_1443 0.86 -0.3 1,554,314 - Psest_1443 0.86 +0.2 1,554,314 - Psest_1443 0.86 -0.4 1,554,314 - Psest_1443 0.86 -0.4
Or see this region's nucleotide sequence