Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13490

Experiment: m.b. Sisomicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c13480 and PGA1_c13490 overlap by 1 nucleotidesPGA1_c13490 and PGA1_c13500 are separated by 142 nucleotidesPGA1_c13500 and PGA1_c13510 overlap by 8 nucleotidesPGA1_c13510 and PGA1_c13520 overlap by 1 nucleotides PGA1_c13480: PGA1_c13480 - hypothetical protein, at 1,394,542 to 1,395,870 _c13480 PGA1_c13490: PGA1_c13490 - putative cytochrome P450, at 1,395,870 to 1,397,300 _c13490 PGA1_c13500: PGA1_c13500 - hypothetical protein, at 1,397,443 to 1,397,661 _c13500 PGA1_c13510: PGA1_c13510 - hypothetical protein, at 1,397,654 to 1,397,860 _c13510 PGA1_c13520: PGA1_c13520 - fumarate hydratase class II, at 1,397,860 to 1,399,254 _c13520 Position (kb) 1395 1396 1397 1398Strain fitness (log2 ratio) -2 -1 0 1 2at 1394.871 kb on + strand, within PGA1_c13480at 1394.884 kb on - strand, within PGA1_c13480at 1394.970 kb on + strand, within PGA1_c13480at 1394.994 kb on + strand, within PGA1_c13480at 1395.028 kb on + strand, within PGA1_c13480at 1395.036 kb on - strand, within PGA1_c13480at 1395.036 kb on - strand, within PGA1_c13480at 1395.072 kb on + strand, within PGA1_c13480at 1395.072 kb on + strand, within PGA1_c13480at 1395.094 kb on - strand, within PGA1_c13480at 1395.094 kb on - strand, within PGA1_c13480at 1395.094 kb on - strand, within PGA1_c13480at 1395.241 kb on + strand, within PGA1_c13480at 1395.259 kb on - strand, within PGA1_c13480at 1395.259 kb on - strand, within PGA1_c13480at 1395.266 kb on + strand, within PGA1_c13480at 1395.274 kb on - strand, within PGA1_c13480at 1395.572 kb on + strand, within PGA1_c13480at 1395.590 kb on - strand, within PGA1_c13480at 1395.690 kb on + strand, within PGA1_c13480at 1395.693 kb on - strand, within PGA1_c13480at 1395.840 kb on - strandat 1395.875 kb on - strandat 1395.931 kb on + strandat 1395.933 kb on + strandat 1395.933 kb on + strandat 1396.011 kb on + strandat 1396.037 kb on + strand, within PGA1_c13490at 1396.037 kb on + strand, within PGA1_c13490at 1396.079 kb on - strand, within PGA1_c13490at 1396.112 kb on - strand, within PGA1_c13490at 1396.112 kb on - strand, within PGA1_c13490at 1396.119 kb on + strand, within PGA1_c13490at 1396.170 kb on + strand, within PGA1_c13490at 1396.170 kb on + strand, within PGA1_c13490at 1396.171 kb on + strand, within PGA1_c13490at 1396.173 kb on - strand, within PGA1_c13490at 1396.311 kb on + strand, within PGA1_c13490at 1396.311 kb on + strand, within PGA1_c13490at 1396.311 kb on + strand, within PGA1_c13490at 1396.327 kb on + strand, within PGA1_c13490at 1396.369 kb on + strand, within PGA1_c13490at 1396.537 kb on + strand, within PGA1_c13490at 1396.545 kb on - strand, within PGA1_c13490at 1396.618 kb on - strand, within PGA1_c13490at 1396.658 kb on + strand, within PGA1_c13490at 1396.658 kb on + strand, within PGA1_c13490at 1396.694 kb on + strand, within PGA1_c13490at 1396.694 kb on + strand, within PGA1_c13490at 1396.702 kb on - strand, within PGA1_c13490at 1396.702 kb on - strand, within PGA1_c13490at 1396.707 kb on - strand, within PGA1_c13490at 1396.746 kb on + strand, within PGA1_c13490at 1396.759 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.769 kb on + strand, within PGA1_c13490at 1396.769 kb on + strand, within PGA1_c13490at 1396.769 kb on + strand, within PGA1_c13490at 1396.769 kb on + strand, within PGA1_c13490at 1396.769 kb on + strand, within PGA1_c13490at 1396.772 kb on - strand, within PGA1_c13490at 1396.834 kb on - strand, within PGA1_c13490at 1396.882 kb on + strand, within PGA1_c13490at 1396.925 kb on + strand, within PGA1_c13490at 1396.983 kb on - strand, within PGA1_c13490at 1397.002 kb on - strand, within PGA1_c13490at 1397.145 kb on + strand, within PGA1_c13490at 1397.172 kb on + strandat 1397.180 kb on - strandat 1397.335 kb on + strandat 1397.401 kb on + strandat 1397.429 kb on + strandat 1397.459 kb on - strandat 1397.483 kb on - strand, within PGA1_c13500at 1397.488 kb on + strand, within PGA1_c13500at 1397.500 kb on + strand, within PGA1_c13500at 1397.508 kb on - strand, within PGA1_c13500at 1397.551 kb on + strand, within PGA1_c13500at 1397.562 kb on - strand, within PGA1_c13500at 1397.636 kb on - strand, within PGA1_c13500at 1397.715 kb on - strand, within PGA1_c13510at 1397.737 kb on - strand, within PGA1_c13510at 1397.763 kb on - strand, within PGA1_c13510

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.005 mg/ml
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1,394,871 + PGA1_c13480 0.25 +1.1
1,394,884 - PGA1_c13480 0.26 -0.6
1,394,970 + PGA1_c13480 0.32 -1.7
1,394,994 + PGA1_c13480 0.34 -0.5
1,395,028 + PGA1_c13480 0.37 -2.2
1,395,036 - PGA1_c13480 0.37 +0.2
1,395,036 - PGA1_c13480 0.37 +0.9
1,395,072 + PGA1_c13480 0.40 +0.9
1,395,072 + PGA1_c13480 0.40 -0.1
1,395,094 - PGA1_c13480 0.42 -0.9
1,395,094 - PGA1_c13480 0.42 +0.5
1,395,094 - PGA1_c13480 0.42 +1.4
1,395,241 + PGA1_c13480 0.53 -1.8
1,395,259 - PGA1_c13480 0.54 -0.5
1,395,259 - PGA1_c13480 0.54 -0.2
1,395,266 + PGA1_c13480 0.54 +0.1
1,395,274 - PGA1_c13480 0.55 +0.8
1,395,572 + PGA1_c13480 0.78 +0.6
1,395,590 - PGA1_c13480 0.79 +0.3
1,395,690 + PGA1_c13480 0.86 -1.1
1,395,693 - PGA1_c13480 0.87 -0.0
1,395,840 - +0.5
1,395,875 - -0.6
1,395,931 + +0.3
1,395,933 + +1.2
1,395,933 + -0.1
1,396,011 + -0.5
1,396,037 + PGA1_c13490 0.12 -1.1
1,396,037 + PGA1_c13490 0.12 +0.4
1,396,079 - PGA1_c13490 0.15 +0.2
1,396,112 - PGA1_c13490 0.17 -0.6
1,396,112 - PGA1_c13490 0.17 -0.3
1,396,119 + PGA1_c13490 0.17 -1.1
1,396,170 + PGA1_c13490 0.21 -0.3
1,396,170 + PGA1_c13490 0.21 -0.0
1,396,171 + PGA1_c13490 0.21 -1.5
1,396,173 - PGA1_c13490 0.21 -0.5
1,396,311 + PGA1_c13490 0.31 -1.1
1,396,311 + PGA1_c13490 0.31 +0.2
1,396,311 + PGA1_c13490 0.31 -0.6
1,396,327 + PGA1_c13490 0.32 +0.9
1,396,369 + PGA1_c13490 0.35 +0.4
1,396,537 + PGA1_c13490 0.47 +1.0
1,396,545 - PGA1_c13490 0.47 -0.0
1,396,618 - PGA1_c13490 0.52 +1.0
1,396,658 + PGA1_c13490 0.55 -0.0
1,396,658 + PGA1_c13490 0.55 -0.9
1,396,694 + PGA1_c13490 0.58 -0.8
1,396,694 + PGA1_c13490 0.58 +1.1
1,396,702 - PGA1_c13490 0.58 -1.1
1,396,702 - PGA1_c13490 0.58 +1.3
1,396,707 - PGA1_c13490 0.58 -0.2
1,396,746 + PGA1_c13490 0.61 +0.4
1,396,759 + PGA1_c13490 0.62 +0.1
1,396,764 + PGA1_c13490 0.62 +2.0
1,396,764 + PGA1_c13490 0.62 -0.6
1,396,764 + PGA1_c13490 0.62 +0.2
1,396,764 + PGA1_c13490 0.62 -0.7
1,396,764 + PGA1_c13490 0.62 +0.0
1,396,764 + PGA1_c13490 0.62 -0.7
1,396,764 + PGA1_c13490 0.62 +0.8
1,396,769 + PGA1_c13490 0.63 -0.4
1,396,769 + PGA1_c13490 0.63 +0.9
1,396,769 + PGA1_c13490 0.63 +0.8
1,396,769 + PGA1_c13490 0.63 +0.6
1,396,769 + PGA1_c13490 0.63 -0.6
1,396,772 - PGA1_c13490 0.63 +0.5
1,396,834 - PGA1_c13490 0.67 -1.4
1,396,882 + PGA1_c13490 0.71 -0.3
1,396,925 + PGA1_c13490 0.74 +2.3
1,396,983 - PGA1_c13490 0.78 +0.1
1,397,002 - PGA1_c13490 0.79 -0.1
1,397,145 + PGA1_c13490 0.89 -1.7
1,397,172 + -2.7
1,397,180 - +0.8
1,397,335 + -0.6
1,397,401 + -2.1
1,397,429 + -0.1
1,397,459 - +2.3
1,397,483 - PGA1_c13500 0.18 -0.9
1,397,488 + PGA1_c13500 0.21 -1.9
1,397,500 + PGA1_c13500 0.26 -2.2
1,397,508 - PGA1_c13500 0.30 -0.2
1,397,551 + PGA1_c13500 0.49 -1.1
1,397,562 - PGA1_c13500 0.54 +0.3
1,397,636 - PGA1_c13500 0.88 -2.2
1,397,715 - PGA1_c13510 0.29 -2.0
1,397,737 - PGA1_c13510 0.40 -0.2
1,397,763 - PGA1_c13510 0.53 -0.4

Or see this region's nucleotide sequence