Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0122

Experiment: Cephalothin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0121 and Psest_0122 are separated by 5 nucleotidesPsest_0122 and Psest_0123 overlap by 28 nucleotides Psest_0121: Psest_0121 - LysM domain., at 116,322 to 117,569 _0121 Psest_0122: Psest_0122 - hypothetical protein, at 117,575 to 118,429 _0122 Psest_0123: Psest_0123 - Rhs element Vgr protein, at 118,402 to 120,501 _0123 Position (kb) 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 116.656 kb on + strand, within Psest_0121at 116.657 kb on - strand, within Psest_0121at 116.657 kb on - strand, within Psest_0121at 116.662 kb on - strand, within Psest_0121at 116.771 kb on + strand, within Psest_0121at 116.775 kb on + strand, within Psest_0121at 116.775 kb on + strand, within Psest_0121at 116.776 kb on - strand, within Psest_0121at 116.820 kb on - strand, within Psest_0121at 116.820 kb on - strand, within Psest_0121at 116.884 kb on + strand, within Psest_0121at 116.884 kb on + strand, within Psest_0121at 116.884 kb on + strand, within Psest_0121at 116.938 kb on + strand, within Psest_0121at 116.938 kb on + strand, within Psest_0121at 116.938 kb on + strand, within Psest_0121at 116.938 kb on + strand, within Psest_0121at 116.938 kb on + strand, within Psest_0121at 117.007 kb on - strand, within Psest_0121at 117.007 kb on - strand, within Psest_0121at 117.055 kb on + strand, within Psest_0121at 117.055 kb on + strand, within Psest_0121at 117.055 kb on + strand, within Psest_0121at 117.056 kb on - strand, within Psest_0121at 117.056 kb on - strand, within Psest_0121at 117.056 kb on - strand, within Psest_0121at 117.056 kb on - strand, within Psest_0121at 117.056 kb on - strand, within Psest_0121at 117.056 kb on - strand, within Psest_0121at 117.289 kb on + strand, within Psest_0121at 117.289 kb on + strand, within Psest_0121at 117.289 kb on + strand, within Psest_0121at 117.289 kb on + strand, within Psest_0121at 117.290 kb on - strand, within Psest_0121at 117.290 kb on - strand, within Psest_0121at 117.290 kb on - strand, within Psest_0121at 117.290 kb on - strand, within Psest_0121at 117.290 kb on - strand, within Psest_0121at 117.290 kb on - strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.301 kb on + strand, within Psest_0121at 117.302 kb on - strand, within Psest_0121at 117.302 kb on - strand, within Psest_0121at 117.302 kb on - strand, within Psest_0121at 117.302 kb on - strand, within Psest_0121at 117.302 kb on - strand, within Psest_0121at 117.302 kb on - strand, within Psest_0121at 117.302 kb on - strand, within Psest_0121at 117.337 kb on + strand, within Psest_0121at 117.338 kb on - strand, within Psest_0121at 117.338 kb on - strand, within Psest_0121at 117.338 kb on - strand, within Psest_0121at 117.562 kb on + strandat 117.562 kb on + strandat 117.563 kb on - strandat 117.563 kb on - strandat 117.563 kb on - strandat 117.563 kb on - strandat 117.659 kb on + strandat 117.659 kb on + strandat 117.660 kb on - strandat 117.660 kb on - strandat 117.660 kb on - strandat 117.660 kb on - strandat 117.708 kb on + strand, within Psest_0122at 117.708 kb on + strand, within Psest_0122at 117.709 kb on - strand, within Psest_0122at 117.831 kb on - strand, within Psest_0122at 118.068 kb on + strand, within Psest_0122at 118.068 kb on + strand, within Psest_0122at 118.069 kb on - strand, within Psest_0122at 118.069 kb on - strand, within Psest_0122at 118.230 kb on + strand, within Psest_0122at 118.230 kb on + strand, within Psest_0122at 118.230 kb on + strand, within Psest_0122at 118.231 kb on - strand, within Psest_0122at 118.279 kb on - strand, within Psest_0122at 118.314 kb on + strand, within Psest_0122at 118.314 kb on + strand, within Psest_0122at 118.314 kb on + strand, within Psest_0122at 118.314 kb on + strand, within Psest_0122at 118.314 kb on + strand, within Psest_0122at 118.314 kb on + strand, within Psest_0122at 118.315 kb on - strand, within Psest_0122at 118.315 kb on - strand, within Psest_0122at 118.315 kb on - strand, within Psest_0122at 118.359 kb on + strandat 118.360 kb on - strandat 118.360 kb on - strandat 118.360 kb on - strandat 118.360 kb on - strandat 118.391 kb on + strandat 118.391 kb on + strandat 118.391 kb on + strandat 118.391 kb on + strandat 118.391 kb on + strandat 118.392 kb on - strandat 118.392 kb on - strandat 118.392 kb on - strandat 118.392 kb on - strandat 118.392 kb on - strandat 118.392 kb on - strandat 118.589 kb on - strandat 118.757 kb on + strand, within Psest_0123at 118.757 kb on + strand, within Psest_0123at 118.757 kb on + strand, within Psest_0123at 118.757 kb on + strand, within Psest_0123at 118.757 kb on + strand, within Psest_0123at 118.758 kb on - strand, within Psest_0123at 118.758 kb on - strand, within Psest_0123at 118.758 kb on - strand, within Psest_0123at 118.818 kb on + strand, within Psest_0123at 118.907 kb on + strand, within Psest_0123at 118.907 kb on + strand, within Psest_0123at 118.907 kb on + strand, within Psest_0123at 118.907 kb on + strand, within Psest_0123at 118.907 kb on + strand, within Psest_0123at 118.907 kb on + strand, within Psest_0123at 118.907 kb on + strand, within Psest_0123at 118.908 kb on - strand, within Psest_0123at 118.908 kb on - strand, within Psest_0123at 118.908 kb on - strand, within Psest_0123at 118.908 kb on - strand, within Psest_0123at 118.908 kb on - strand, within Psest_0123at 118.908 kb on - strand, within Psest_0123at 118.908 kb on - strand, within Psest_0123at 119.003 kb on + strand, within Psest_0123at 119.003 kb on + strand, within Psest_0123at 119.003 kb on + strand, within Psest_0123at 119.004 kb on - strand, within Psest_0123at 119.004 kb on - strand, within Psest_0123at 119.004 kb on - strand, within Psest_0123at 119.004 kb on - strand, within Psest_0123at 119.004 kb on - strand, within Psest_0123at 119.004 kb on - strand, within Psest_0123at 119.004 kb on - strand, within Psest_0123at 119.004 kb on - strand, within Psest_0123at 119.138 kb on + strand, within Psest_0123

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.04 mg/ml
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116,656 + Psest_0121 0.27 +0.4
116,657 - Psest_0121 0.27 +0.1
116,657 - Psest_0121 0.27 -1.4
116,662 - Psest_0121 0.27 +0.1
116,771 + Psest_0121 0.36 -1.4
116,775 + Psest_0121 0.36 +0.5
116,775 + Psest_0121 0.36 +0.3
116,776 - Psest_0121 0.36 +0.4
116,820 - Psest_0121 0.40 -1.9
116,820 - Psest_0121 0.40 -1.0
116,884 + Psest_0121 0.45 +1.4
116,884 + Psest_0121 0.45 +1.1
116,884 + Psest_0121 0.45 +0.1
116,938 + Psest_0121 0.49 +0.7
116,938 + Psest_0121 0.49 -1.5
116,938 + Psest_0121 0.49 -0.7
116,938 + Psest_0121 0.49 +2.8
116,938 + Psest_0121 0.49 -0.4
117,007 - Psest_0121 0.55 -1.6
117,007 - Psest_0121 0.55 -1.5
117,055 + Psest_0121 0.59 -0.6
117,055 + Psest_0121 0.59 -0.6
117,055 + Psest_0121 0.59 +0.1
117,056 - Psest_0121 0.59 -2.3
117,056 - Psest_0121 0.59 -3.2
117,056 - Psest_0121 0.59 +0.6
117,056 - Psest_0121 0.59 -2.4
117,056 - Psest_0121 0.59 -1.4
117,056 - Psest_0121 0.59 -0.3
117,289 + Psest_0121 0.77 -0.1
117,289 + Psest_0121 0.77 +0.7
117,289 + Psest_0121 0.77 +0.4
117,289 + Psest_0121 0.77 +0.1
117,290 - Psest_0121 0.78 +1.0
117,290 - Psest_0121 0.78 +0.1
117,290 - Psest_0121 0.78 +0.8
117,290 - Psest_0121 0.78 -0.7
117,290 - Psest_0121 0.78 +0.5
117,290 - Psest_0121 0.78 -0.6
117,301 + Psest_0121 0.78 -1.6
117,301 + Psest_0121 0.78 +0.6
117,301 + Psest_0121 0.78 -1.7
117,301 + Psest_0121 0.78 -1.1
117,301 + Psest_0121 0.78 +0.0
117,301 + Psest_0121 0.78 +2.0
117,301 + Psest_0121 0.78 -0.6
117,301 + Psest_0121 0.78 +0.2
117,301 + Psest_0121 0.78 +0.6
117,301 + Psest_0121 0.78 -0.1
117,301 + Psest_0121 0.78 -2.0
117,301 + Psest_0121 0.78 -0.9
117,301 + Psest_0121 0.78 +1.0
117,301 + Psest_0121 0.78 +0.3
117,301 + Psest_0121 0.78 -0.0
117,302 - Psest_0121 0.79 -1.4
117,302 - Psest_0121 0.79 -0.6
117,302 - Psest_0121 0.79 -0.6
117,302 - Psest_0121 0.79 -1.6
117,302 - Psest_0121 0.79 -0.7
117,302 - Psest_0121 0.79 -1.0
117,302 - Psest_0121 0.79 +0.0
117,337 + Psest_0121 0.81 +0.0
117,338 - Psest_0121 0.81 -2.9
117,338 - Psest_0121 0.81 -1.4
117,338 - Psest_0121 0.81 +0.0
117,562 + -1.8
117,562 + -1.6
117,563 - +1.8
117,563 - -0.9
117,563 - +1.0
117,563 - -0.2
117,659 + -0.5
117,659 + +0.6
117,660 - +0.4
117,660 - +0.6
117,660 - +1.7
117,660 - -0.3
117,708 + Psest_0122 0.16 +0.6
117,708 + Psest_0122 0.16 +0.0
117,709 - Psest_0122 0.16 -1.1
117,831 - Psest_0122 0.30 +0.4
118,068 + Psest_0122 0.58 +0.6
118,068 + Psest_0122 0.58 -1.4
118,069 - Psest_0122 0.58 -1.6
118,069 - Psest_0122 0.58 -1.7
118,230 + Psest_0122 0.77 +0.5
118,230 + Psest_0122 0.77 +0.4
118,230 + Psest_0122 0.77 -0.9
118,231 - Psest_0122 0.77 -0.5
118,279 - Psest_0122 0.82 +0.3
118,314 + Psest_0122 0.86 -1.2
118,314 + Psest_0122 0.86 -1.2
118,314 + Psest_0122 0.86 -0.2
118,314 + Psest_0122 0.86 -1.3
118,314 + Psest_0122 0.86 -3.4
118,314 + Psest_0122 0.86 +0.6
118,315 - Psest_0122 0.87 -0.1
118,315 - Psest_0122 0.87 -0.4
118,315 - Psest_0122 0.87 -1.0
118,359 + +0.6
118,360 - -0.6
118,360 - +0.6
118,360 - +0.6
118,360 - -1.0
118,391 + +0.1
118,391 + +0.3
118,391 + +0.4
118,391 + -0.6
118,391 + -0.4
118,392 - -0.7
118,392 - +0.6
118,392 - -1.1
118,392 - -1.3
118,392 - -0.8
118,392 - -1.2
118,589 - -2.2
118,757 + Psest_0123 0.17 +1.4
118,757 + Psest_0123 0.17 +0.0
118,757 + Psest_0123 0.17 +2.1
118,757 + Psest_0123 0.17 -0.1
118,757 + Psest_0123 0.17 +0.2
118,758 - Psest_0123 0.17 +1.0
118,758 - Psest_0123 0.17 +0.4
118,758 - Psest_0123 0.17 +1.9
118,818 + Psest_0123 0.20 +0.8
118,907 + Psest_0123 0.24 +0.4
118,907 + Psest_0123 0.24 +0.0
118,907 + Psest_0123 0.24 +0.9
118,907 + Psest_0123 0.24 +3.2
118,907 + Psest_0123 0.24 +4.0
118,907 + Psest_0123 0.24 -0.2
118,907 + Psest_0123 0.24 +0.8
118,908 - Psest_0123 0.24 -1.8
118,908 - Psest_0123 0.24 -0.9
118,908 - Psest_0123 0.24 -0.6
118,908 - Psest_0123 0.24 -1.2
118,908 - Psest_0123 0.24 -2.4
118,908 - Psest_0123 0.24 -1.4
118,908 - Psest_0123 0.24 +3.0
119,003 + Psest_0123 0.29 -0.5
119,003 + Psest_0123 0.29 +1.4
119,003 + Psest_0123 0.29 -0.6
119,004 - Psest_0123 0.29 -1.4
119,004 - Psest_0123 0.29 -2.5
119,004 - Psest_0123 0.29 +0.6
119,004 - Psest_0123 0.29 -1.8
119,004 - Psest_0123 0.29 -0.7
119,004 - Psest_0123 0.29 -1.3
119,004 - Psest_0123 0.29 -2.4
119,004 - Psest_0123 0.29 -0.2
119,138 + Psest_0123 0.35 +0.1

Or see this region's nucleotide sequence