Strain Fitness in Shewanella amazonensis SB2B around Sama_3454

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,083,283	-		Sama_3452	0.79	-0.9
4,083,283	-		Sama_3452	0.79	+0.4
4,083,396	+				+0.7
4,083,397	-				-0.3
4,083,397	-				+1.0
4,083,398	+				+1.1
4,083,398	+				-0.5
4,083,399	-				-2.1
4,083,399	-				-0.3
4,083,412	+				-0.9
4,083,412	+				+1.0
4,083,412	+				+0.8
4,083,414	+				-0.9
4,083,414	+				-1.7
4,083,414	+				-1.4
4,083,415	-				-0.5
4,083,415	-				-0.7
4,083,429	+				-2.4
4,083,429	+				+1.1
4,083,429	+				+0.5
4,083,429	+				-0.3
4,083,429	+				+0.6
4,083,429	+				+0.3
4,083,429	+				+0.3
4,083,429	+				-0.0
4,083,429	+				-0.1
4,083,430	-				-0.4
4,083,430	-				+0.9
4,083,430	-				+1.0
4,083,430	-				-1.2
4,083,430	-				+0.3
4,083,430	-				-1.0
4,083,430	-				-0.2
4,083,430	-				-0.8
4,083,447	+				+0.7
4,083,454	-				-0.4
4,083,454	-				-1.0
4,083,454	-				-0.4
4,083,505	-				+0.3
4,083,510	-				-1.0
4,083,517	+				-0.1
4,083,517	+				-0.8
4,083,517	+				-0.4
4,083,518	-				-1.0
4,083,518	-				-0.0
4,083,553	+				-0.5
4,083,553	+				-0.0
4,083,553	+				-0.0
4,083,553	+				-1.4
4,083,553	+				+0.7
4,083,554	-				-0.7
4,083,554	-				+1.7
4,083,561	+				+0.4
4,083,561	+				-0.3
4,083,573	+				-0.1
4,083,573	+				-0.1
4,083,573	+				+0.5
4,083,573	+				+0.6
4,083,573	+				+0.6
4,083,573	+				+0.8
4,083,574	-				-1.0
4,083,574	-				-0.2
4,083,574	-				+1.0
4,083,574	-				-1.2
4,083,574	-				-0.1
4,083,574	-				+0.3
4,083,574	-				+0.0
4,083,574	-				+0.7
4,083,574	-				+1.4
4,083,574	-				-0.7
4,083,612	+				-0.6
4,083,612	+				-0.8
4,083,613	-				+0.7
4,083,613	-				+0.1
4,083,613	-				-0.0
4,083,617	+				-0.4
4,083,618	-				-0.0
4,083,645	-				+0.7
4,083,645	-				+0.0
4,083,758	+		Sama_3453	0.18	-2.3
4,083,758	+		Sama_3453	0.18	-0.5
4,083,758	+		Sama_3453	0.18	+0.7
4,083,759	-		Sama_3453	0.18	-0.6
4,083,759	-		Sama_3453	0.18	-0.2
4,083,770	+		Sama_3453	0.20	-1.1
4,083,771	-		Sama_3453	0.20	-0.3
4,083,800	+		Sama_3453	0.26	-2.3
4,083,801	-		Sama_3453	0.26	-1.5
4,083,823	+		Sama_3453	0.30	-2.0
4,083,823	+		Sama_3453	0.30	+1.7
4,083,823	+		Sama_3453	0.30	+0.4
4,083,823	+		Sama_3453	0.30	-0.2
4,083,850	+		Sama_3453	0.35	-0.5
4,083,890	+		Sama_3453	0.42	-0.4
4,083,890	+		Sama_3453	0.42	+0.3
4,083,890	+		Sama_3453	0.42	-1.3
4,084,001	+		Sama_3453	0.63	-0.3
4,084,001	+		Sama_3453	0.63	-0.3
4,084,001	+		Sama_3453	0.63	-1.0
4,084,001	+		Sama_3453	0.63	-0.2
4,084,001	+		Sama_3453	0.63	-0.4
4,084,002	-		Sama_3453	0.63	-0.4
4,084,002	-		Sama_3453	0.63	-1.4
4,084,002	-		Sama_3453	0.63	-1.0
4,084,065	+		Sama_3453	0.75	+0.7
4,084,066	-		Sama_3453	0.75	-1.3
4,084,066	-		Sama_3453	0.75	-0.7
4,084,066	-		Sama_3453	0.75	-0.9
4,084,088	+		Sama_3453	0.79	-0.3
4,084,088	+		Sama_3453	0.79	-0.1
4,084,088	+		Sama_3453	0.79	-0.5
4,084,135	-		Sama_3453	0.87	-0.8
4,084,135	-		Sama_3453	0.87	-0.4
4,084,160	+				-0.5
4,084,160	+				-0.3
4,084,160	+				+0.6
4,084,160	+				-0.0
4,084,161	-				-1.0
4,084,171	+				+0.4
4,084,172	-				-0.3
4,084,200	+				-1.4
4,084,200	+				+0.6
4,084,200	+				+0.3
4,084,201	-				+0.2
4,084,201	-				+0.9
4,084,201	-				-0.0
4,084,208	-				+0.4
4,084,208	-				-0.7
4,084,208	-				-0.3
4,084,208	-				-0.8
4,084,233	+				+0.1
4,084,233	+				+0.4
4,084,233	+				+0.3
4,084,233	+				-0.1
4,084,233	+				+0.3
4,084,233	+				+1.0
4,084,233	+				+2.3
4,084,234	-				-1.5
4,084,234	-				+0.5
4,084,234	-				-2.0
4,084,234	-				-1.4
4,084,393	-		Sama_3454	0.38	-1.2
4,084,400	+		Sama_3454	0.39	-0.0
4,084,401	-		Sama_3454	0.39	-1.0
4,084,475	-		Sama_3454	0.56	+0.1
4,084,475	-		Sama_3454	0.56	+1.4
4,084,485	+		Sama_3454	0.59	+0.1
4,084,485	+		Sama_3454	0.59	-0.7
4,084,485	+		Sama_3454	0.59	+0.6
4,084,485	+		Sama_3454	0.59	+0.9
4,084,485	+		Sama_3454	0.59	+1.4
4,084,485	+		Sama_3454	0.59	+0.6
4,084,486	-		Sama_3454	0.59	-0.6
4,084,488	+		Sama_3454	0.59	-0.7
4,084,489	-		Sama_3454	0.60	+0.4
4,084,573	+		Sama_3454	0.79	-0.3
4,084,574	-		Sama_3454	0.79	-0.8
4,084,612	+		Sama_3454	0.88	+0.7
4,084,613	-		Sama_3454	0.88	-2.6
4,084,613	-		Sama_3454	0.88	+0.3
4,084,613	-		Sama_3454	0.88	-2.6
4,084,634	+				+0.0
4,084,634	+				-0.3
4,084,634	+				-0.0
4,084,635	-				-0.0
4,084,635	-				-0.1
4,084,635	-				+0.7
4,084,664	-				-0.8
4,084,677	-				-0.5
4,084,742	+				+0.3
4,084,742	+				+0.2
4,084,742	+				-0.2
4,084,743	-				-0.3
4,084,743	-				-1.3
4,084,743	-				+0.5
4,084,743	-				+0.6
4,084,757	+		Sama_3455	0.12	+0.1
4,084,758	-		Sama_3455	0.12	+0.1
4,084,758	-		Sama_3455	0.12	-1.8
4,084,758	-		Sama_3455	0.12	-0.3
4,084,760	+		Sama_3455	0.12	+0.7
4,084,760	+		Sama_3455	0.12	+0.3
4,084,760	+		Sama_3455	0.12	-0.0
4,084,760	+		Sama_3455	0.12	+0.7
4,084,761	-		Sama_3455	0.12	+0.3
4,084,841	+		Sama_3455	0.22	+0.3
4,084,841	+		Sama_3455	0.22	-1.0
4,084,841	+		Sama_3455	0.22	+0.6
4,084,842	-		Sama_3455	0.22	-0.0
4,084,842	-		Sama_3455	0.22	+0.8
4,084,853	+		Sama_3455	0.23	+0.4
4,084,853	+		Sama_3455	0.23	-0.1
4,084,854	-		Sama_3455	0.23	+0.7
4,084,854	-		Sama_3455	0.23	-0.2
4,084,854	-		Sama_3455	0.23	-1.2
4,084,858	+		Sama_3455	0.24	+1.0
4,084,858	+		Sama_3455	0.24	+0.7
4,084,858	+		Sama_3455	0.24	-0.4
4,084,859	-		Sama_3455	0.24	+1.1
4,084,859	-		Sama_3455	0.24	+1.0
4,084,859	-		Sama_3455	0.24	+0.1
4,084,948	-		Sama_3455	0.35	+0.4
4,084,964	-		Sama_3455	0.37	-0.3
4,084,986	+		Sama_3455	0.39	+2.3
4,085,056	-		Sama_3455	0.48	-0.7
4,085,061	+		Sama_3455	0.48	+0.1
4,085,061	+		Sama_3455	0.48	-0.7
4,085,061	+		Sama_3455	0.48	-0.7
4,085,061	+		Sama_3455	0.48	+0.3
4,085,061	+		Sama_3455	0.48	+0.7
4,085,061	+		Sama_3455	0.48	+0.6
4,085,062	-		Sama_3455	0.48	+0.4
4,085,062	-		Sama_3455	0.48	-1.0
4,085,062	-		Sama_3455	0.48	-2.0
4,085,062	-		Sama_3455	0.48	+0.3
4,085,062	-		Sama_3455	0.48	-0.0
4,085,062	-		Sama_3455	0.48	-1.4
4,085,062	-		Sama_3455	0.48	+0.5
4,085,062	-		Sama_3455	0.48	-1.4
4,085,062	-		Sama_3455	0.48	-2.5
4,085,062	-		Sama_3455	0.48	-1.2
4,085,093	+		Sama_3455	0.52	-0.6
4,085,093	+		Sama_3455	0.52	-1.3
4,085,093	+		Sama_3455	0.52	-1.2
4,085,093	+		Sama_3455	0.52	+1.9
4,085,093	+		Sama_3455	0.52	+0.9
4,085,094	-		Sama_3455	0.52	-2.5
4,085,094	-		Sama_3455	0.52	-0.3
4,085,094	-		Sama_3455	0.52	+0.7
4,085,144	+		Sama_3455	0.58	+0.3
4,085,145	-		Sama_3455	0.59	-1.6
4,085,145	-		Sama_3455	0.59	+0.4
4,085,145	-		Sama_3455	0.59	-2.0
4,085,145	-		Sama_3455	0.59	+0.6
4,085,145	-		Sama_3455	0.59	-0.7
4,085,145	-		Sama_3455	0.59	-0.8
4,085,162	+		Sama_3455	0.61	+0.8
4,085,162	+		Sama_3455	0.61	-0.4
4,085,162	+		Sama_3455	0.61	+0.3
4,085,162	+		Sama_3455	0.61	+1.3
4,085,162	+		Sama_3455	0.61	-0.8
4,085,162	+		Sama_3455	0.61	+0.4
4,085,162	+		Sama_3455	0.61	-1.0
4,085,162	+		Sama_3455	0.61	+0.4
4,085,162	+		Sama_3455	0.61	-0.7
4,085,163	-		Sama_3455	0.61	+0.1
4,085,163	-		Sama_3455	0.61	+1.7
4,085,163	-		Sama_3455	0.61	-1.0
4,085,163	-		Sama_3455	0.61	-1.2
4,085,268	+		Sama_3455	0.73	-0.6
4,085,269	-		Sama_3455	0.74	+1.7
4,085,384	+		Sama_3455	0.88	+0.6
4,085,385	-		Sama_3455	0.88	-1.7
4,085,403	-		Sama_3455	0.90	-0.6
4,085,409	+				-2.8
4,085,409	+				+0.0
4,085,448	+				-0.8
4,085,448	+				-1.0
4,085,449	-				-2.2
4,085,449	-				-1.3
4,085,505	+				+0.6
4,085,506	-				-1.3
4,085,512	+				-0.8
4,085,512	+				-0.1
4,085,512	+				+0.6
4,085,513	-				-0.6
4,085,513	-				+0.4
4,085,517	+				+0.8
4,085,517	+				+0.1
4,085,517	+				+1.0
4,085,517	+				+0.7
4,085,517	+				+0.7
4,085,517	+				-0.0
4,085,517	+				-1.0
4,085,517	+				-0.8
4,085,517	+				+0.6
4,085,517	+				-1.4
4,085,517	+				+0.1
4,085,517	+				-1.0
4,085,517	+				+0.2
4,085,518	-				+0.8
4,085,518	-				-0.6
4,085,518	-				-1.0
4,085,518	-				-1.4
4,085,518	-				-0.5
4,085,518	-				+0.1
4,085,518	-				-0.2
4,085,518	-				+0.9
4,085,518	-				-0.4
4,085,518	-				+0.7
4,085,518	-				+0.5
4,085,519	+				-0.0
4,085,519	+				+1.0
4,085,519	+				-0.3
4,085,519	+				+0.5
4,085,520	-				-0.2
4,085,558	-				+0.7
4,085,558	-				-0.0
4,085,560	+				-1.0
4,085,561	-				+0.4
4,085,566	+				+0.1
4,085,566	+				+0.2
4,085,570	+				-0.3
4,085,570	+				-1.2
4,085,571	-				-0.1
4,085,594	+				-0.3
4,085,595	-				+0.3
4,085,603	-				-0.7
4,085,603	-				-0.1
4,085,609	+				-1.9
4,085,609	+				+0.7
4,085,609	+				+0.4
4,085,609	+				-0.7
4,085,610	-				-0.7
4,085,618	-				-2.2