Strain Fitness in Shewanella amazonensis SB2B around Sama_3305

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,930,972	+		Sama_3304	0.72	-0.9
3,930,973	-		Sama_3304	0.72	-0.4
3,931,013	-		Sama_3304	0.75	+0.7
3,931,036	+		Sama_3304	0.77	-1.2
3,931,036	+		Sama_3304	0.77	+0.3
3,931,037	-		Sama_3304	0.77	-0.6
3,931,045	+		Sama_3304	0.77	+0.4
3,931,119	+		Sama_3304	0.83	-0.7
3,931,120	-		Sama_3304	0.83	+0.5
3,931,120	-		Sama_3304	0.83	+0.4
3,931,153	+		Sama_3304	0.85	+1.0
3,931,232	+				+0.4
3,931,232	+				+1.5
3,931,232	+				+1.0
3,931,232	+				-1.1
3,931,233	-				+0.1
3,931,263	+				-0.6
3,931,358	+				-0.8
3,931,522	+				-0.1
3,931,539	+				-0.4
3,931,540	-				-0.1
3,931,642	-				+1.5
3,931,672	+				-0.2
3,931,673	-				-0.4
3,931,717	-				-0.2
3,931,717	-				-0.9
3,931,774	+				+0.8
3,931,774	+				+0.4
3,931,774	+				-0.0
3,931,774	+				+1.6
3,931,775	-				+0.7
3,931,775	-				-0.6
3,931,871	+				+0.6
3,931,871	+				-0.8
3,931,872	-				+1.1
3,931,872	-				-1.0
3,931,872	-				-1.0
3,931,872	-				-1.0
3,931,872	-				+1.2
3,931,873	+				-0.1
3,931,873	+				+0.8
3,931,873	+				+1.1
3,931,873	+				-0.4
3,931,873	+				+0.2
3,931,873	+				-2.3
3,931,874	-				-0.8
3,931,874	-				+0.9
3,931,881	-				-0.7
3,931,881	-				-0.4
3,931,894	+				-0.5
3,931,896	+				-0.2
3,931,896	+				-0.4
3,932,054	-		Sama_3305	0.24	-1.8
3,932,080	-		Sama_3305	0.28	+0.3
3,932,128	+		Sama_3305	0.35	-1.3
3,932,128	+		Sama_3305	0.35	+1.1
3,932,129	-		Sama_3305	0.36	-0.2
3,932,129	-		Sama_3305	0.36	-0.2
3,932,172	-		Sama_3305	0.42	-0.9
3,932,173	+		Sama_3305	0.42	-1.1
3,932,174	-		Sama_3305	0.43	-1.0
3,932,261	+		Sama_3305	0.56	+1.2
3,932,261	+		Sama_3305	0.56	+0.4
3,932,262	-		Sama_3305	0.56	-2.2
3,932,352	-		Sama_3305	0.70	+0.4
3,932,415	-		Sama_3305	0.80	-1.2
3,932,436	-		Sama_3305	0.83	-2.5
3,932,487	-				+0.3
3,932,531	+				+0.9
3,932,532	-				+0.3
3,932,532	-				-0.8
3,932,564	+				-0.4
3,932,592	-				-0.1
3,932,603	+				-2.5
3,932,654	-				+0.2
3,932,654	-				-1.2
3,932,704	+				-2.2
3,932,781	+		Sama_3306	0.12	+1.5
3,932,781	+		Sama_3306	0.12	-0.6
3,932,800	-		Sama_3306	0.13	+0.0
3,932,800	-		Sama_3306	0.13	-0.6
3,932,828	-		Sama_3306	0.14	-1.0
3,932,861	-		Sama_3306	0.16	-1.2
3,933,068	-		Sama_3306	0.26	-1.0
3,933,077	-		Sama_3306	0.27	-1.2
3,933,131	-		Sama_3306	0.30	-0.5
3,933,131	-		Sama_3306	0.30	-0.1
3,933,219	+		Sama_3306	0.34	-0.1
3,933,220	-		Sama_3306	0.34	+0.9
3,933,223	-		Sama_3306	0.34	-1.4
3,933,223	-		Sama_3306	0.34	+1.2
3,933,223	-		Sama_3306	0.34	+0.2
3,933,226	+		Sama_3306	0.34	-0.2
3,933,227	-		Sama_3306	0.34	-0.0
3,933,227	-		Sama_3306	0.34	+1.4
3,933,228	+		Sama_3306	0.34	-0.1
3,933,230	+		Sama_3306	0.35	-0.2
3,933,231	-		Sama_3306	0.35	-2.0
3,933,241	-		Sama_3306	0.35	+0.6
3,933,256	-		Sama_3306	0.36	+0.1
3,933,287	-		Sama_3306	0.37	+0.1
3,933,291	+		Sama_3306	0.38	+0.4
3,933,292	-		Sama_3306	0.38	-0.0
3,933,298	-		Sama_3306	0.38	+1.2
3,933,361	+		Sama_3306	0.41	-0.5
3,933,362	-		Sama_3306	0.41	-2.0
3,933,362	-		Sama_3306	0.41	+0.1
3,933,362	-		Sama_3306	0.41	+0.4
3,933,378	-		Sama_3306	0.42	+0.3
3,933,379	+		Sama_3306	0.42	+0.3
3,933,391	+		Sama_3306	0.43	+0.8
3,933,392	-		Sama_3306	0.43	-0.4
3,933,448	+		Sama_3306	0.46	+1.2
3,933,449	-		Sama_3306	0.46	-0.6