Strain Fitness in Shewanella amazonensis SB2B around Sama_1966

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,394,033	-		Sama_1964	0.88	+0.2
2,394,075	-				-1.3
2,394,075	-				-0.4
2,394,075	-				-0.6
2,394,075	-				-0.5
2,394,085	-				+3.1
2,394,118	-				+1.9
2,394,172	-				-1.1
2,394,234	-				-1.3
2,394,234	-				+1.1
2,394,244	-				-1.2
2,394,254	-				+1.5
2,394,254	-				+0.7
2,394,254	-				+0.4
2,394,293	-		Sama_1965	0.35	+0.2
2,394,293	-		Sama_1965	0.35	-0.9
2,394,303	-		Sama_1965	0.42	-1.1
2,394,387	-				+0.4
2,394,414	-				-0.8
2,394,414	-				+0.5
2,394,515	+				-0.2
2,394,516	-				-0.8
2,394,516	-				-1.8
2,394,537	-				+0.5
2,394,537	-				+0.2
2,394,602	+				+0.9
2,394,602	+				+0.9
2,394,602	+				-0.1
2,394,692	+				-0.2
2,394,692	+				+0.3
2,394,692	+				+0.9
2,394,693	-				-0.6
2,394,693	-				-1.4
2,394,693	-				-1.5
2,394,705	+				-0.8
2,394,705	+				-2.2
2,394,706	-				-0.8
2,394,709	+				+0.1
2,394,709	+				-1.6
2,394,777	+				+0.5
2,394,777	+				-0.1
2,394,778	-				-0.1
2,394,778	-				-0.3
2,394,778	+				-0.0
2,394,778	-				-1.1
2,394,779	+				-0.5
2,394,780	-				+0.3
2,394,805	-				+0.8
2,394,812	-				-0.5
2,394,812	-				+0.3
2,394,841	+				-1.8
2,394,843	+				-0.1
2,394,843	+				-0.9
2,394,844	-				-1.0
2,394,844	-				+0.8
2,394,844	-				-1.0
2,394,988	-		Sama_1966	0.12	+1.5
2,394,988	-		Sama_1966	0.12	-0.8
2,395,040	-		Sama_1966	0.19	+0.4
2,395,056	+		Sama_1966	0.20	-1.4
2,395,056	+		Sama_1966	0.20	+0.0
2,395,056	+		Sama_1966	0.20	-0.5
2,395,118	+		Sama_1966	0.28	-1.6
2,395,121	+		Sama_1966	0.28	-1.0
2,395,220	-		Sama_1966	0.40	-0.6
2,395,229	+		Sama_1966	0.41	+0.4
2,395,229	+		Sama_1966	0.41	+0.9
2,395,240	-		Sama_1966	0.43	-1.1
2,395,240	-		Sama_1966	0.43	-0.8
2,395,240	-		Sama_1966	0.43	-0.6
2,395,285	-		Sama_1966	0.48	-0.5
2,395,312	+		Sama_1966	0.51	+0.4
2,395,312	+		Sama_1966	0.51	+0.1
2,395,312	+		Sama_1966	0.51	-1.8
2,395,312	+		Sama_1966	0.51	-1.1
2,395,313	-		Sama_1966	0.51	-1.3
2,395,313	-		Sama_1966	0.51	-1.1
2,395,313	-		Sama_1966	0.51	-0.1
2,395,368	+		Sama_1966	0.58	-0.8
2,395,368	+		Sama_1966	0.58	-2.1
2,395,368	+		Sama_1966	0.58	+1.0
2,395,369	-		Sama_1966	0.58	-1.5
2,395,377	+		Sama_1966	0.59	-0.2
2,395,386	+		Sama_1966	0.60	-1.8
2,395,443	+		Sama_1966	0.67	-0.1
2,395,443	+		Sama_1966	0.67	+0.4
2,395,443	+		Sama_1966	0.67	+1.3
2,395,456	+		Sama_1966	0.69	-1.5
2,395,456	+		Sama_1966	0.69	-1.9
2,395,456	+		Sama_1966	0.69	+1.1
2,395,456	+		Sama_1966	0.69	-0.7
2,395,653	+				+0.5
2,395,653	+				+0.8
2,395,705	+				+0.1
2,395,722	+				-1.3
2,395,723	-				-0.6
2,395,806	+				+0.4
2,395,807	-				+0.6
2,395,809	-				-0.8
2,395,879	+				+0.4
2,396,073	+		Sama_1967	0.37	+0.9
2,396,073	+		Sama_1967	0.37	-0.4
2,396,075	+		Sama_1967	0.37	-0.9
2,396,075	+		Sama_1967	0.37	+2.1
2,396,090	+		Sama_1967	0.40	+0.5
2,396,090	+		Sama_1967	0.40	-0.1
2,396,091	-		Sama_1967	0.40	+0.2
2,396,091	-		Sama_1967	0.40	-1.5
2,396,093	+		Sama_1967	0.40	-0.6
2,396,094	-		Sama_1967	0.40	-0.8
2,396,137	+		Sama_1967	0.47	+1.5
2,396,156	-		Sama_1967	0.50	+0.3
2,396,156	-		Sama_1967	0.50	-0.1
2,396,401	+		Sama_1967	0.89	-0.9
2,396,402	-		Sama_1967	0.89	-0.7
2,396,402	-		Sama_1967	0.89	-0.8
2,396,458	+				-0.8
2,396,458	+				-0.5
2,396,458	+				+0.9
2,396,458	+				-0.2
2,396,459	-				-2.3
2,396,469	+				-0.3
2,396,470	-				+0.2
2,396,490	+				+0.8
2,396,491	-				-0.9
2,396,491	-				+0.4
2,396,491	-				+0.4
2,396,527	-				-1.5
2,396,527	-				-0.8
2,396,562	+				+0.8
2,396,563	-				-0.1
2,396,608	+		Sama_1968	0.14	-1.6
2,396,609	-		Sama_1968	0.14	+0.5
2,396,609	-		Sama_1968	0.14	-0.1
2,396,628	+		Sama_1968	0.16	-0.9
2,396,629	-		Sama_1968	0.16	-2.2
2,396,629	-		Sama_1968	0.16	+0.7
2,396,629	-		Sama_1968	0.16	-0.6
2,396,629	-		Sama_1968	0.16	+1.1
2,396,629	-		Sama_1968	0.16	-0.1
2,396,629	-		Sama_1968	0.16	+0.4
2,396,636	-		Sama_1968	0.17	+0.9
2,396,636	-		Sama_1968	0.17	-1.5
2,396,638	+		Sama_1968	0.17	+0.5
2,396,639	-		Sama_1968	0.17	+0.2
2,396,649	+		Sama_1968	0.18	-0.3
2,396,662	+		Sama_1968	0.20	-1.1
2,396,662	+		Sama_1968	0.20	+1.1
2,396,662	+		Sama_1968	0.20	-1.3
2,396,663	-		Sama_1968	0.20	-0.8
2,396,663	-		Sama_1968	0.20	+0.5
2,396,663	-		Sama_1968	0.20	-2.1
2,396,665	-		Sama_1968	0.20	+0.3