Strain Fitness in Shewanella amazonensis SB2B around Sama_1616

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,976,429	+		Sama_1615	0.75	-0.7
1,976,429	+		Sama_1615	0.75	-3.1
1,976,430	-		Sama_1615	0.75	-1.4
1,976,430	-		Sama_1615	0.75	-0.5
1,976,465	+		Sama_1615	0.76	+0.5
1,976,505	-		Sama_1615	0.77	-1.9
1,976,520	-		Sama_1615	0.77	-1.6
1,976,520	-		Sama_1615	0.77	-0.1
1,976,562	+		Sama_1615	0.79	-2.1
1,976,562	+		Sama_1615	0.79	-2.1
1,976,563	-		Sama_1615	0.79	-2.5
1,976,724	-		Sama_1615	0.83	-3.3
1,976,776	-		Sama_1615	0.84	-2.4
1,976,776	-		Sama_1615	0.84	-2.2
1,976,791	-		Sama_1615	0.84	-1.4
1,976,791	-		Sama_1615	0.84	-0.5
1,976,875	-		Sama_1615	0.87	-0.5
1,976,889	+		Sama_1615	0.87	-1.1
1,976,890	-		Sama_1615	0.87	-2.0
1,976,890	-		Sama_1615	0.87	+0.1
1,976,912	+		Sama_1615	0.87	-1.5
1,976,912	+		Sama_1615	0.87	-0.7
1,976,912	+		Sama_1615	0.87	-1.1
1,976,912	+		Sama_1615	0.87	-0.1
1,976,913	-		Sama_1615	0.88	-2.9
1,976,913	-		Sama_1615	0.88	-1.4
1,976,985	+		Sama_1615	0.89	-0.8
1,976,986	-		Sama_1615	0.89	-1.6
1,976,986	-		Sama_1615	0.89	-2.1
1,976,986	-		Sama_1615	0.89	-1.5
1,977,111	+				-1.7
1,977,111	+				-1.8
1,977,111	+				-1.8
1,977,111	+				-1.5
1,977,111	+				-2.2
1,977,112	-				-2.6
1,977,112	-				-1.9
1,977,112	-				-2.0
1,977,112	-				-1.8
1,977,112	-				-1.5
1,977,112	-				-1.5
1,977,112	-				-0.7
1,977,113	+				-1.3
1,977,114	-				-0.5
1,977,114	-				-1.9
1,977,114	-				-1.7
1,977,140	+				-0.8
1,977,154	+				-2.4
1,977,154	+				-0.7
1,977,154	+				-2.2
1,977,155	-				-1.4
1,977,155	-				-2.6
1,977,155	-				-1.1
1,977,266	-				+0.2
1,977,266	-				-1.7
1,977,266	-				-1.1
1,977,266	-				-0.7
1,977,266	-				-1.3
1,977,387	-				-1.1
1,977,399	-				-1.0
1,977,399	-				+1.2
1,977,422	+				-1.3
1,977,422	+				-1.2
1,977,422	+				-1.2
1,977,422	+				-0.5
1,977,422	+				+0.3
1,977,422	+				-1.2
1,977,423	-				-0.8
1,977,423	-				-1.1
1,977,423	-				-2.4
1,977,423	-				-1.1
1,977,423	-				-0.5
1,977,423	-				-0.5
1,977,423	-				-0.8
1,977,425	-				+0.2
1,977,425	-				-1.7
1,977,445	+				-0.5
1,977,446	-				-2.1
1,977,446	+				-0.5
1,977,465	-				-1.2
1,977,465	-				-1.3
1,977,491	+				-0.7
1,977,510	-				-2.7
1,977,528	-				-1.1
1,977,551	-				-2.0
1,977,607	-		Sama_1616	0.12	-1.3
1,977,607	-		Sama_1616	0.12	-0.1
1,977,607	-		Sama_1616	0.12	+0.2
1,977,609	+		Sama_1616	0.12	-2.0
1,977,610	-		Sama_1616	0.12	-0.8
1,977,610	-		Sama_1616	0.12	-1.2
1,977,616	-		Sama_1616	0.12	-1.1
1,977,650	+		Sama_1616	0.14	-1.5
1,977,650	+		Sama_1616	0.14	-1.1
1,977,650	+		Sama_1616	0.14	-1.1
1,977,651	-		Sama_1616	0.14	-0.7
1,977,651	-		Sama_1616	0.14	-2.2
1,977,651	-		Sama_1616	0.14	-1.3
1,977,651	-		Sama_1616	0.14	-1.1
1,977,694	+		Sama_1616	0.16	-1.7
1,977,696	+		Sama_1616	0.16	-0.2
1,977,696	+		Sama_1616	0.16	-1.1
1,977,697	-		Sama_1616	0.16	-1.8
1,977,697	-		Sama_1616	0.16	-0.7
1,977,697	-		Sama_1616	0.16	-3.5
1,977,730	+		Sama_1616	0.18	-1.7
1,977,731	-		Sama_1616	0.18	+0.5
1,977,841	+		Sama_1616	0.24	-1.2
1,977,884	+		Sama_1616	0.27	-0.1
1,977,884	+		Sama_1616	0.27	-0.8
1,977,885	-		Sama_1616	0.27	-1.5
1,977,919	-		Sama_1616	0.28	-2.9
1,977,931	-		Sama_1616	0.29	-4.1
1,977,994	+		Sama_1616	0.33	-1.2
1,977,995	-		Sama_1616	0.33	-2.7
1,978,024	-		Sama_1616	0.34	-1.3
1,978,024	-		Sama_1616	0.34	-1.7
1,978,024	-		Sama_1616	0.34	-0.3
1,978,044	+		Sama_1616	0.35	-1.8
1,978,179	+		Sama_1616	0.43	-2.7
1,978,179	+		Sama_1616	0.43	-0.3
1,978,179	+		Sama_1616	0.43	-1.3
1,978,179	+		Sama_1616	0.43	-0.1
1,978,180	-		Sama_1616	0.43	-1.6
1,978,180	-		Sama_1616	0.43	-1.1
1,978,180	-		Sama_1616	0.43	-2.0
1,978,180	-		Sama_1616	0.43	-0.1
1,978,180	-		Sama_1616	0.43	-1.1
1,978,180	-		Sama_1616	0.43	-1.7
1,978,180	-		Sama_1616	0.43	-0.5
1,978,180	-		Sama_1616	0.43	-1.8
1,978,180	-		Sama_1616	0.43	-1.6
1,978,181	+		Sama_1616	0.43	-1.3
1,978,181	+		Sama_1616	0.43	-1.7
1,978,181	+		Sama_1616	0.43	-1.3
1,978,182	-		Sama_1616	0.43	-2.5
1,978,182	-		Sama_1616	0.43	-2.6
1,978,182	-		Sama_1616	0.43	-1.3
1,978,182	-		Sama_1616	0.43	-2.4
1,978,182	-		Sama_1616	0.43	-0.1
1,978,182	-		Sama_1616	0.43	-1.3
1,978,182	-		Sama_1616	0.43	+0.5
1,978,197	+		Sama_1616	0.44	-2.0
1,978,197	+		Sama_1616	0.44	-1.5
1,978,201	+		Sama_1616	0.44	-1.3
1,978,201	+		Sama_1616	0.44	-2.2
1,978,264	+		Sama_1616	0.47	-0.5
1,978,265	-		Sama_1616	0.47	-1.1
1,978,266	+		Sama_1616	0.47	-0.1
1,978,266	+		Sama_1616	0.47	-1.6
1,978,266	+		Sama_1616	0.47	-1.7
1,978,266	+		Sama_1616	0.47	-1.3
1,978,266	+		Sama_1616	0.47	-1.8
1,978,266	+		Sama_1616	0.47	-0.5
1,978,266	+		Sama_1616	0.47	-0.8
1,978,266	+		Sama_1616	0.47	-1.5
1,978,267	-		Sama_1616	0.47	-0.1
1,978,267	-		Sama_1616	0.47	-1.7
1,978,267	-		Sama_1616	0.47	-0.1
1,978,267	-		Sama_1616	0.47	-2.0
1,978,267	-		Sama_1616	0.47	-0.1
1,978,267	-		Sama_1616	0.47	-2.6
1,978,267	-		Sama_1616	0.47	-2.2
1,978,306	+		Sama_1616	0.50	-2.4
1,978,336	+		Sama_1616	0.51	-1.7
1,978,381	+		Sama_1616	0.54	-0.8
1,978,382	-		Sama_1616	0.54	+1.1
1,978,382	-		Sama_1616	0.54	-1.4
1,978,400	+		Sama_1616	0.55	-1.5
1,978,400	+		Sama_1616	0.55	-0.1
1,978,401	-		Sama_1616	0.55	-1.5
1,978,401	-		Sama_1616	0.55	-1.5
1,978,402	+		Sama_1616	0.55	-3.0
1,978,403	-		Sama_1616	0.55	-1.8
1,978,503	-		Sama_1616	0.60	-0.9
1,978,503	-		Sama_1616	0.60	-0.8
1,978,522	-		Sama_1616	0.61	-2.4
1,978,572	+		Sama_1616	0.64	-3.0
1,978,572	+		Sama_1616	0.64	+0.9
1,978,572	+		Sama_1616	0.64	-1.5
1,978,604	-		Sama_1616	0.66	-0.3
1,978,738	-		Sama_1616	0.73	+0.6
1,978,753	-		Sama_1616	0.74	-2.6
1,978,790	-		Sama_1616	0.76	-0.1
1,978,800	+		Sama_1616	0.76	-2.5
1,978,963	+		Sama_1616	0.85	-1.8
1,978,964	-		Sama_1616	0.85	-2.4
1,979,002	-		Sama_1616	0.87	-2.3
1,979,002	-		Sama_1616	0.87	-1.6
1,979,004	+		Sama_1616	0.87	-1.5
1,979,004	+		Sama_1616	0.87	-1.9
1,979,047	+		Sama_1616	0.90	-3.0
1,979,047	+		Sama_1616	0.90	-1.3
1,979,048	-		Sama_1616	0.90	-2.0
1,979,048	-		Sama_1616	0.90	-1.1
1,979,048	-		Sama_1616	0.90	-0.1
1,979,069	+				-0.5
1,979,069	+				-3.0
1,979,070	-				-0.8
1,979,130	-				-1.3
1,979,145	-				-1.5
1,979,145	-				-0.3
1,979,153	+				-1.6
1,979,154	-				-1.8
1,979,154	-				-2.3
1,979,262	+				-0.2
1,979,289	-				+0.2
1,979,363	-				-1.5
1,979,373	-				-0.1
1,979,385	+				-0.8
1,979,385	+				+0.4
1,979,385	+				-0.5
1,979,615	+		Sama_1617	0.19	+0.9
1,979,616	-		Sama_1617	0.19	+0.2
1,979,621	+		Sama_1617	0.20	-0.8
1,979,621	+		Sama_1617	0.20	+0.9
1,979,622	-		Sama_1617	0.20	-0.3
1,979,646	-		Sama_1617	0.22	+0.2
1,979,668	-		Sama_1617	0.24	+1.2
1,979,668	-		Sama_1617	0.24	-1.5
1,979,747	+		Sama_1617	0.33	-0.5
1,979,747	+		Sama_1617	0.33	+0.2
1,979,748	-		Sama_1617	0.33	-0.6
1,979,748	-		Sama_1617	0.33	-1.1
1,979,793	-		Sama_1617	0.37	+0.5
1,979,989	-		Sama_1617	0.57	-2.1
1,979,989	-		Sama_1617	0.57	+0.5
1,980,086	+		Sama_1617	0.67	+0.5
1,980,086	+		Sama_1617	0.67	-2.6
1,980,120	+		Sama_1617	0.70	-1.8
1,980,120	+		Sama_1617	0.70	-0.4
1,980,168	+		Sama_1617	0.75	-1.5
1,980,169	-		Sama_1617	0.75	-0.0
1,980,169	-		Sama_1617	0.75	+0.9
1,980,181	-		Sama_1617	0.77	+0.6
1,980,216	+		Sama_1617	0.80	-0.1
1,980,216	+		Sama_1617	0.80	+0.5
1,980,216	+		Sama_1617	0.80	+0.5
1,980,217	-		Sama_1617	0.80	+0.1