Strain Fitness in Shewanella amazonensis SB2B around Sama_1422

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,730,440	+		Sama_1421	0.35	-0.0
1,730,440	+		Sama_1421	0.35	+0.7
1,730,441	-		Sama_1421	0.35	-0.2
1,730,441	-		Sama_1421	0.35	+1.0
1,730,480	+		Sama_1421	0.39	-0.0
1,730,480	+		Sama_1421	0.39	-0.7
1,730,539	+		Sama_1421	0.45	-0.1
1,730,570	+		Sama_1421	0.47	+0.3
1,730,570	+		Sama_1421	0.47	+1.0
1,730,570	+		Sama_1421	0.47	+0.9
1,730,570	+		Sama_1421	0.47	+1.1
1,730,570	+		Sama_1421	0.47	-1.1
1,730,570	+		Sama_1421	0.47	-0.2
1,730,571	-		Sama_1421	0.48	+0.7
1,730,571	-		Sama_1421	0.48	-0.4
1,730,714	+		Sama_1421	0.61	-2.3
1,730,747	+		Sama_1421	0.64	+0.7
1,730,747	+		Sama_1421	0.64	+1.6
1,730,747	+		Sama_1421	0.64	+1.0
1,730,747	+		Sama_1421	0.64	+0.2
1,730,748	-		Sama_1421	0.64	+0.2
1,730,748	-		Sama_1421	0.64	-0.0
1,730,822	-		Sama_1421	0.71	-0.2
1,730,822	-		Sama_1421	0.71	+1.6
1,730,828	+		Sama_1421	0.72	+0.6
1,730,828	+		Sama_1421	0.72	+0.1
1,730,828	+		Sama_1421	0.72	+0.3
1,730,829	-		Sama_1421	0.72	-0.4
1,730,829	-		Sama_1421	0.72	-0.2
1,730,908	+		Sama_1421	0.79	-1.0
1,730,908	+		Sama_1421	0.79	+0.5
1,730,909	-		Sama_1421	0.79	+1.4
1,730,909	-		Sama_1421	0.79	+0.2
1,730,975	+		Sama_1421	0.85	-0.7
1,730,975	+		Sama_1421	0.85	-0.1
1,731,022	+		Sama_1421	0.90	-0.4
1,731,022	+		Sama_1421	0.90	-1.0
1,731,029	+				+0.2
1,731,076	+				-1.8
1,731,076	+				-0.4
1,731,133	+				-0.7
1,731,133	+				+0.4
1,731,134	-				+0.6
1,731,134	-				-0.4
1,731,134	-				-0.2
1,731,135	+				-0.1
1,731,135	+				+0.2
1,731,136	-				-1.4
1,731,148	-				-0.3
1,731,290	-				-0.3
1,731,302	+				+1.7
1,731,452	+				-2.4
1,731,453	-				-1.9
1,731,591	+	gltA	Sama_1422	0.14	-1.9
1,731,592	-	gltA	Sama_1422	0.14	-0.7
1,731,592	-	gltA	Sama_1422	0.14	-1.1
1,731,592	-	gltA	Sama_1422	0.14	-0.2
1,731,599	+	gltA	Sama_1422	0.15	-0.1
1,731,599	+	gltA	Sama_1422	0.15	-0.7
1,731,599	+	gltA	Sama_1422	0.15	-1.4
1,731,599	+	gltA	Sama_1422	0.15	-1.6
1,731,599	+	gltA	Sama_1422	0.15	-1.2
1,731,600	-	gltA	Sama_1422	0.15	+0.6
1,731,600	-	gltA	Sama_1422	0.15	-1.5
1,731,600	-	gltA	Sama_1422	0.15	+0.3
1,731,607	+	gltA	Sama_1422	0.16	-1.0
1,731,633	+	gltA	Sama_1422	0.18	+1.6
1,731,633	+	gltA	Sama_1422	0.18	-1.6
1,731,634	-	gltA	Sama_1422	0.18	-0.3
1,731,634	-	gltA	Sama_1422	0.18	+1.0
1,731,634	-	gltA	Sama_1422	0.18	-1.6
1,731,634	-	gltA	Sama_1422	0.18	-1.6
1,731,634	-	gltA	Sama_1422	0.18	-0.7
1,731,638	+	gltA	Sama_1422	0.18	-1.2
1,731,638	+	gltA	Sama_1422	0.18	+0.3
1,731,638	+	gltA	Sama_1422	0.18	-0.4
1,731,639	-	gltA	Sama_1422	0.18	-0.4
1,731,639	-	gltA	Sama_1422	0.18	-2.1
1,731,639	-	gltA	Sama_1422	0.18	-1.9
1,731,639	-	gltA	Sama_1422	0.18	+0.3
1,731,657	+	gltA	Sama_1422	0.20	-0.7
1,731,657	+	gltA	Sama_1422	0.20	-1.4
1,731,739	+	gltA	Sama_1422	0.26	-0.2
1,731,739	+	gltA	Sama_1422	0.26	-0.3
1,731,739	+	gltA	Sama_1422	0.26	-0.0
1,731,740	-	gltA	Sama_1422	0.26	-1.2
1,731,740	-	gltA	Sama_1422	0.26	+1.3
1,731,740	-	gltA	Sama_1422	0.26	-0.0
1,731,740	-	gltA	Sama_1422	0.26	+0.4
1,731,740	-	gltA	Sama_1422	0.26	-1.4
1,731,841	-	gltA	Sama_1422	0.34	-2.6
1,731,852	+	gltA	Sama_1422	0.35	-1.1
1,731,937	-	gltA	Sama_1422	0.41	-0.0
1,731,981	+	gltA	Sama_1422	0.45	-1.4
1,731,982	-	gltA	Sama_1422	0.45	+2.0
1,731,982	-	gltA	Sama_1422	0.45	-1.9
1,731,982	-	gltA	Sama_1422	0.45	-0.9
1,731,982	-	gltA	Sama_1422	0.45	-2.7
1,731,982	-	gltA	Sama_1422	0.45	+0.3
1,731,987	+	gltA	Sama_1422	0.45	+0.3
1,731,988	-	gltA	Sama_1422	0.45	-0.4
1,732,058	-	gltA	Sama_1422	0.51	-1.2
1,732,064	+	gltA	Sama_1422	0.51	-1.7
1,732,064	+	gltA	Sama_1422	0.51	-0.2
1,732,078	+	gltA	Sama_1422	0.52	-1.6
1,732,126	-	gltA	Sama_1422	0.56	-1.2
1,732,126	-	gltA	Sama_1422	0.56	-1.7
1,732,126	-	gltA	Sama_1422	0.56	-2.1
1,732,126	-	gltA	Sama_1422	0.56	-2.4
1,732,126	-	gltA	Sama_1422	0.56	-0.3
1,732,126	-	gltA	Sama_1422	0.56	-0.7
1,732,134	-	gltA	Sama_1422	0.57	-1.3
1,732,157	+	gltA	Sama_1422	0.58	-1.0
1,732,157	+	gltA	Sama_1422	0.58	-1.3
1,732,158	-	gltA	Sama_1422	0.58	-0.7
1,732,158	-	gltA	Sama_1422	0.58	-1.7
1,732,158	-	gltA	Sama_1422	0.58	-0.0
1,732,164	-	gltA	Sama_1422	0.59	-1.5
1,732,164	-	gltA	Sama_1422	0.59	-0.7
1,732,237	+	gltA	Sama_1422	0.65	-1.4
1,732,237	+	gltA	Sama_1422	0.65	+1.2
1,732,237	+	gltA	Sama_1422	0.65	+0.6
1,732,238	-	gltA	Sama_1422	0.65	-0.6
1,732,256	+	gltA	Sama_1422	0.66	+1.1
1,732,257	-	gltA	Sama_1422	0.66	-0.6
1,732,288	+	gltA	Sama_1422	0.69	-0.4
1,732,288	+	gltA	Sama_1422	0.69	-1.9
1,732,288	+	gltA	Sama_1422	0.69	-2.0
1,732,289	-	gltA	Sama_1422	0.69	+0.6
1,732,289	-	gltA	Sama_1422	0.69	-0.1
1,732,391	+	gltA	Sama_1422	0.77	-0.0
1,732,392	-	gltA	Sama_1422	0.77	-0.7
1,732,402	-	gltA	Sama_1422	0.77	+0.9
1,732,430	+	gltA	Sama_1422	0.80	+1.6
1,732,431	-	gltA	Sama_1422	0.80	-0.7
1,732,445	+	gltA	Sama_1422	0.81	-1.2
1,732,445	+	gltA	Sama_1422	0.81	-1.7
1,732,446	-	gltA	Sama_1422	0.81	-1.8
1,732,446	-	gltA	Sama_1422	0.81	-0.7
1,732,456	+	gltA	Sama_1422	0.82	+0.4
1,732,457	-	gltA	Sama_1422	0.82	-1.9
1,732,457	-	gltA	Sama_1422	0.82	-1.4
1,732,498	-	gltA	Sama_1422	0.85	-1.4
1,732,517	+	gltA	Sama_1422	0.86	-1.0
1,732,517	+	gltA	Sama_1422	0.86	+0.3
1,732,518	-	gltA	Sama_1422	0.86	-0.4
1,732,518	-	gltA	Sama_1422	0.86	-0.0
1,732,518	-	gltA	Sama_1422	0.86	-2.4
1,732,518	-	gltA	Sama_1422	0.86	-2.7
1,732,518	-	gltA	Sama_1422	0.86	-0.9
1,732,518	-	gltA	Sama_1422	0.86	-1.1
1,732,518	-	gltA	Sama_1422	0.86	-0.0
1,732,521	+	gltA	Sama_1422	0.87	-1.6
1,732,521	+	gltA	Sama_1422	0.87	-0.2
1,732,521	+	gltA	Sama_1422	0.87	-1.6
1,732,521	+	gltA	Sama_1422	0.87	-1.6
1,732,522	-	gltA	Sama_1422	0.87	-0.2
1,732,522	-	gltA	Sama_1422	0.87	-1.0
1,732,575	-				-2.7
1,732,575	-				-1.4
1,732,575	-				-0.0
1,732,606	-				-1.6
1,732,606	-				-1.0
1,732,664	-				-0.0
1,732,693	-				-2.1
1,732,706	+				-1.9
1,732,707	-				-0.6
1,732,707	-				-0.6
1,732,707	-				-1.2
1,732,707	-				-1.1
1,732,707	-				-1.0
1,732,748	+				-0.3
1,732,749	-				-1.5
1,732,749	-				-0.9
1,732,754	-				-2.1
1,732,754	-				-0.4
1,732,781	+				-0.0
1,732,802	+				-1.9
1,732,813	-				-0.2
1,732,815	-				-0.2
1,732,850	-				-1.7
1,732,878	+				-0.7
1,732,879	-				+1.0
1,732,879	-				+1.1
1,732,879	-				+0.6
1,732,879	-				+0.5
1,732,879	-				-2.1
1,732,879	-				+1.3
1,732,884	+				-0.5
1,732,885	-				-0.4
1,732,959	+				+1.0
1,733,012	+				-2.2
1,733,088	+				-0.4