Strain Fitness in Shewanella amazonensis SB2B around Sama_0515

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_0514 and Sama_0515 are separated by 257 nucleotidesSama_0515 and Sama_0516 are separated by 35 nucleotidesSama_0516 and Sama_0517 are separated by 126 nucleotides Sama_0514: Sama_0514 - excinuclease ABC, A subunit (RefSeq), at 631,612 to 634,440 _0514 Sama_0515: Sama_0515 - transporter, putative (RefSeq), at 634,698 to 636,065 _0515 Sama_0516: Sama_0516 - single-strand binding protein (RefSeq), at 636,101 to 636,805 _0516 Sama_0517: Sama_0517 - D-beta-hydroxybutyrate dehydrogenase (RefSeq), at 636,932 to 637,732 _0517 Position (kb) 634 635 636 637Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 633.884 kb on - strand, within Sama_0514at 633.892 kb on + strand, within Sama_0514at 633.892 kb on + strand, within Sama_0514at 633.919 kb on - strand, within Sama_0514at 633.920 kb on + strand, within Sama_0514at 633.920 kb on + strand, within Sama_0514at 633.920 kb on + strand, within Sama_0514at 633.920 kb on + strand, within Sama_0514at 633.920 kb on + strand, within Sama_0514at 633.921 kb on - strand, within Sama_0514at 633.921 kb on - strand, within Sama_0514at 633.921 kb on - strand, within Sama_0514at 633.952 kb on - strand, within Sama_0514at 633.952 kb on - strand, within Sama_0514at 634.117 kb on + strand, within Sama_0514at 634.117 kb on + strand, within Sama_0514at 634.117 kb on + strand, within Sama_0514at 634.117 kb on + strand, within Sama_0514at 634.121 kb on + strand, within Sama_0514at 634.122 kb on - strand, within Sama_0514at 634.122 kb on - strand, within Sama_0514at 634.127 kb on + strand, within Sama_0514at 634.127 kb on + strand, within Sama_0514at 634.128 kb on - strand, within Sama_0514at 634.128 kb on - strand, within Sama_0514at 634.143 kb on + strand, within Sama_0514at 634.144 kb on - strand, within Sama_0514at 634.216 kb on - strandat 634.216 kb on - strandat 634.262 kb on + strandat 634.284 kb on - strandat 634.305 kb on - strandat 634.305 kb on - strandat 634.305 kb on - strandat 634.311 kb on + strandat 634.392 kb on + strandat 634.392 kb on + strandat 634.392 kb on + strandat 634.392 kb on + strandat 634.392 kb on + strandat 634.393 kb on - strandat 634.393 kb on - strandat 634.452 kb on - strandat 634.483 kb on + strandat 634.488 kb on + strandat 634.489 kb on - strandat 634.500 kb on + strandat 634.500 kb on + strandat 634.500 kb on + strandat 634.550 kb on - strandat 634.550 kb on - strandat 634.579 kb on + strandat 634.653 kb on + strandat 634.703 kb on + strandat 634.784 kb on + strandat 634.784 kb on + strandat 634.784 kb on + strandat 634.784 kb on + strandat 634.785 kb on - strandat 634.850 kb on + strand, within Sama_0515at 634.851 kb on - strand, within Sama_0515at 634.852 kb on + strand, within Sama_0515at 634.852 kb on + strand, within Sama_0515at 634.852 kb on + strand, within Sama_0515at 634.852 kb on + strand, within Sama_0515at 634.853 kb on - strand, within Sama_0515at 634.866 kb on + strand, within Sama_0515at 634.866 kb on + strand, within Sama_0515at 634.866 kb on + strand, within Sama_0515at 634.866 kb on + strand, within Sama_0515at 634.904 kb on + strand, within Sama_0515at 634.904 kb on + strand, within Sama_0515at 634.937 kb on + strand, within Sama_0515at 634.937 kb on + strand, within Sama_0515at 635.001 kb on + strand, within Sama_0515at 635.001 kb on + strand, within Sama_0515at 635.001 kb on + strand, within Sama_0515at 635.001 kb on + strand, within Sama_0515at 635.001 kb on + strand, within Sama_0515at 635.001 kb on + strand, within Sama_0515at 635.001 kb on + strand, within Sama_0515at 635.001 kb on + strand, within Sama_0515at 635.002 kb on - strand, within Sama_0515at 635.002 kb on - strand, within Sama_0515at 635.126 kb on + strand, within Sama_0515at 635.127 kb on - strand, within Sama_0515at 635.127 kb on - strand, within Sama_0515at 635.180 kb on + strand, within Sama_0515at 635.180 kb on + strand, within Sama_0515at 635.239 kb on + strand, within Sama_0515at 635.288 kb on + strand, within Sama_0515at 635.358 kb on - strand, within Sama_0515at 635.358 kb on - strand, within Sama_0515at 635.363 kb on + strand, within Sama_0515at 635.363 kb on + strand, within Sama_0515at 635.364 kb on - strand, within Sama_0515at 635.454 kb on + strand, within Sama_0515at 635.455 kb on - strand, within Sama_0515at 635.469 kb on - strand, within Sama_0515at 635.498 kb on + strand, within Sama_0515at 635.498 kb on + strand, within Sama_0515at 635.519 kb on + strand, within Sama_0515at 635.520 kb on - strand, within Sama_0515at 635.645 kb on + strand, within Sama_0515at 635.645 kb on + strand, within Sama_0515at 635.646 kb on - strand, within Sama_0515at 635.646 kb on - strand, within Sama_0515at 635.649 kb on + strand, within Sama_0515at 635.650 kb on - strand, within Sama_0515at 635.724 kb on + strand, within Sama_0515at 635.724 kb on + strand, within Sama_0515at 635.725 kb on - strand, within Sama_0515at 635.886 kb on + strand, within Sama_0515at 635.886 kb on + strand, within Sama_0515at 635.887 kb on - strand, within Sama_0515at 635.887 kb on - strand, within Sama_0515at 635.887 kb on - strand, within Sama_0515at 635.887 kb on - strand, within Sama_0515at 635.887 kb on - strand, within Sama_0515at 635.887 kb on - strand, within Sama_0515at 635.905 kb on + strand, within Sama_0515at 635.905 kb on + strand, within Sama_0515at 635.906 kb on - strand, within Sama_0515at 635.962 kb on + strandat 635.963 kb on - strandat 636.000 kb on + strandat 636.028 kb on + strandat 636.810 kb on + strandat 636.819 kb on + strandat 636.819 kb on + strandat 636.819 kb on + strandat 636.820 kb on - strandat 636.820 kb on - strandat 636.820 kb on - strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.822 kb on - strandat 636.822 kb on - strandat 636.822 kb on - strandat 636.822 kb on - strandat 636.822 kb on - strandat 636.822 kb on - strandat 637.022 kb on + strand, within Sama_0517at 637.022 kb on + strand, within Sama_0517at 637.022 kb on + strand, within Sama_0517

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
633,884 - Sama_0514 0.80 +1.5
633,892 + Sama_0514 0.81 -0.7
633,892 + Sama_0514 0.81 +0.5
633,919 - Sama_0514 0.82 -0.3
633,920 + Sama_0514 0.82 -0.8
633,920 + Sama_0514 0.82 +0.3
633,920 + Sama_0514 0.82 +0.7
633,920 + Sama_0514 0.82 +0.6
633,920 + Sama_0514 0.82 -0.2
633,921 - Sama_0514 0.82 +0.2
633,921 - Sama_0514 0.82 -0.1
633,921 - Sama_0514 0.82 -0.2
633,952 - Sama_0514 0.83 -0.4
633,952 - Sama_0514 0.83 -1.4
634,117 + Sama_0514 0.89 -0.0
634,117 + Sama_0514 0.89 -1.1
634,117 + Sama_0514 0.89 +0.6
634,117 + Sama_0514 0.89 -0.0
634,121 + Sama_0514 0.89 +1.4
634,122 - Sama_0514 0.89 -3.5
634,122 - Sama_0514 0.89 -1.6
634,127 + Sama_0514 0.89 -0.6
634,127 + Sama_0514 0.89 -0.1
634,128 - Sama_0514 0.89 +0.5
634,128 - Sama_0514 0.89 -0.6
634,143 + Sama_0514 0.89 -0.2
634,144 - Sama_0514 0.90 -0.7
634,216 - +1.3
634,216 - +0.4
634,262 + +0.6
634,284 - -0.6
634,305 - -0.9
634,305 - -0.2
634,305 - +1.2
634,311 + +0.6
634,392 + +0.4
634,392 + +1.2
634,392 + +0.9
634,392 + -0.7
634,392 + -1.5
634,393 - -1.1
634,393 - +0.2
634,452 - -1.2
634,483 + -0.8
634,488 + -1.3
634,489 - +0.1
634,500 + +0.6
634,500 + -2.7
634,500 + -2.4
634,550 - -0.3
634,550 - -0.5
634,579 + -0.1
634,653 + +0.3
634,703 + -0.9
634,784 + -1.5
634,784 + -0.2
634,784 + -0.7
634,784 + -0.6
634,785 - +0.5
634,850 + Sama_0515 0.11 -1.2
634,851 - Sama_0515 0.11 +0.9
634,852 + Sama_0515 0.11 -1.9
634,852 + Sama_0515 0.11 +1.1
634,852 + Sama_0515 0.11 -1.6
634,852 + Sama_0515 0.11 -0.7
634,853 - Sama_0515 0.11 +1.8
634,866 + Sama_0515 0.12 -0.1
634,866 + Sama_0515 0.12 -0.6
634,866 + Sama_0515 0.12 -1.6
634,866 + Sama_0515 0.12 +0.5
634,904 + Sama_0515 0.15 +0.8
634,904 + Sama_0515 0.15 -2.1
634,937 + Sama_0515 0.17 -0.1
634,937 + Sama_0515 0.17 -0.7
635,001 + Sama_0515 0.22 -0.6
635,001 + Sama_0515 0.22 +0.1
635,001 + Sama_0515 0.22 -1.3
635,001 + Sama_0515 0.22 +0.3
635,001 + Sama_0515 0.22 -0.7
635,001 + Sama_0515 0.22 -0.9
635,001 + Sama_0515 0.22 -0.0
635,001 + Sama_0515 0.22 +0.5
635,002 - Sama_0515 0.22 -1.8
635,002 - Sama_0515 0.22 -0.7
635,126 + Sama_0515 0.31 -0.2
635,127 - Sama_0515 0.31 -0.5
635,127 - Sama_0515 0.31 -1.0
635,180 + Sama_0515 0.35 +0.2
635,180 + Sama_0515 0.35 -0.5
635,239 + Sama_0515 0.40 -0.5
635,288 + Sama_0515 0.43 -0.5
635,358 - Sama_0515 0.48 +0.1
635,358 - Sama_0515 0.48 +0.4
635,363 + Sama_0515 0.49 -0.9
635,363 + Sama_0515 0.49 +0.1
635,364 - Sama_0515 0.49 -0.7
635,454 + Sama_0515 0.55 -0.6
635,455 - Sama_0515 0.55 +1.1
635,469 - Sama_0515 0.56 -0.7
635,498 + Sama_0515 0.58 -0.9
635,498 + Sama_0515 0.58 +0.4
635,519 + Sama_0515 0.60 -1.2
635,520 - Sama_0515 0.60 -1.8
635,645 + Sama_0515 0.69 -0.4
635,645 + Sama_0515 0.69 +0.5
635,646 - Sama_0515 0.69 -0.5
635,646 - Sama_0515 0.69 -0.5
635,649 + Sama_0515 0.70 +0.5
635,650 - Sama_0515 0.70 +1.1
635,724 + Sama_0515 0.75 -0.1
635,724 + Sama_0515 0.75 -0.5
635,725 - Sama_0515 0.75 -0.6
635,886 + Sama_0515 0.87 -0.9
635,886 + Sama_0515 0.87 -2.4
635,887 - Sama_0515 0.87 +1.9
635,887 - Sama_0515 0.87 -0.7
635,887 - Sama_0515 0.87 -0.8
635,887 - Sama_0515 0.87 -0.1
635,887 - Sama_0515 0.87 +0.6
635,887 - Sama_0515 0.87 +0.7
635,905 + Sama_0515 0.88 -0.8
635,905 + Sama_0515 0.88 -1.2
635,906 - Sama_0515 0.88 +2.1
635,962 + +0.3
635,963 - -0.1
636,000 + -1.3
636,028 + +0.8
636,810 + +1.3
636,819 + -0.2
636,819 + +2.1
636,819 + +0.4
636,820 - -1.0
636,820 - -0.6
636,820 - -0.5
636,821 + -0.2
636,821 + +0.3
636,821 + -0.8
636,821 + +0.5
636,821 + -1.0
636,821 + +2.4
636,821 + +0.8
636,821 + -0.2
636,821 + +0.2
636,821 + -0.1
636,821 + -0.7
636,821 + -0.5
636,821 + +1.5
636,821 + -0.5
636,821 + -0.7
636,821 + -0.2
636,821 + +0.2
636,821 + +0.4
636,822 - +1.4
636,822 - +0.2
636,822 - -1.5
636,822 - -0.8
636,822 - -0.7
636,822 - -0.7
637,022 + Sama_0517 0.11 +0.4
637,022 + Sama_0517 0.11 +2.1
637,022 + Sama_0517 0.11 +0.5

Or see this region's nucleotide sequence