Strain Fitness in Shewanella amazonensis SB2B around Sama_0245

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
267,784	+		Sama_0243	0.65	-0.3
267,805	+		Sama_0243	0.68	-0.7
267,806	-		Sama_0243	0.68	-1.0
267,829	+		Sama_0243	0.71	-0.5
267,829	+		Sama_0243	0.71	+1.3
267,830	-		Sama_0243	0.71	+1.1
267,831	+		Sama_0243	0.72	-0.3
267,831	+		Sama_0243	0.72	+0.3
267,831	+		Sama_0243	0.72	-0.0
267,831	+		Sama_0243	0.72	+1.0
267,831	+		Sama_0243	0.72	-0.5
267,831	+		Sama_0243	0.72	+0.3
267,831	+		Sama_0243	0.72	-0.0
267,832	-		Sama_0243	0.72	-0.0
267,832	-		Sama_0243	0.72	-0.0
267,868	+		Sama_0243	0.77	-0.5
267,900	+		Sama_0243	0.81	-0.5
267,901	-		Sama_0243	0.81	+2.0
267,901	-		Sama_0243	0.81	+0.6
267,901	-		Sama_0243	0.81	-0.0
267,946	+		Sama_0243	0.87	-0.9
267,978	-				-0.0
267,978	-				-0.7
267,992	+				-0.5
268,000	-				-1.5
268,028	+				+0.3
268,029	-				-0.0
268,043	-				-0.7
268,045	+				-0.0
268,045	+				-0.6
268,046	-				-0.5
268,046	-				-1.7
268,049	+				+0.3
268,050	-				-0.2
268,050	-				-0.9
268,119	+		Sama_0244	0.11	-0.5
268,119	+		Sama_0244	0.11	-0.7
268,120	-		Sama_0244	0.11	-0.5
268,120	-		Sama_0244	0.11	-0.7
268,120	-		Sama_0244	0.11	-0.5
268,122	+		Sama_0244	0.11	+0.3
268,142	-		Sama_0244	0.14	-0.3
268,142	-		Sama_0244	0.14	+2.3
268,147	-		Sama_0244	0.15	+0.7
268,201	+		Sama_0244	0.23	-0.7
268,202	-		Sama_0244	0.23	-0.5
268,202	-		Sama_0244	0.23	-1.0
268,202	-		Sama_0244	0.23	-1.2
268,212	+		Sama_0244	0.24	-0.7
268,213	-		Sama_0244	0.25	-0.0
268,215	-		Sama_0244	0.25	-0.3
268,216	-		Sama_0244	0.25	-0.5
268,231	-		Sama_0244	0.27	-0.3
268,241	+		Sama_0244	0.29	-0.5
268,242	-		Sama_0244	0.29	+0.3
268,242	-		Sama_0244	0.29	-0.5
268,245	+		Sama_0244	0.29	+0.3
268,245	+		Sama_0244	0.29	-0.7
268,245	+		Sama_0244	0.29	+0.7
268,246	-		Sama_0244	0.29	-0.3
268,246	-		Sama_0244	0.29	-0.9
268,269	+		Sama_0244	0.33	+0.7
268,269	+		Sama_0244	0.33	+0.3
268,270	-		Sama_0244	0.33	-0.0
268,270	-		Sama_0244	0.33	-0.3
268,270	-		Sama_0244	0.33	-0.7
268,270	-		Sama_0244	0.33	-0.7
268,270	-		Sama_0244	0.33	-2.0
268,298	+		Sama_0244	0.37	+0.3
268,330	+		Sama_0244	0.42	-0.5
268,330	+		Sama_0244	0.42	-1.4
268,331	-		Sama_0244	0.42	-0.7
268,331	-		Sama_0244	0.42	-1.5
268,331	-		Sama_0244	0.42	-0.4
268,439	-		Sama_0244	0.57	-1.2
268,439	-		Sama_0244	0.57	+0.3
268,456	-		Sama_0244	0.60	-0.0
268,539	+		Sama_0244	0.72	-0.5
268,573	-		Sama_0244	0.77	-1.8
268,573	-		Sama_0244	0.77	-0.3
268,689	+				+0.3
268,689	+				-0.2
268,690	-				+0.3
268,709	+				-1.2
268,715	+				-0.7
268,716	-				+0.7
268,716	-				-0.9
268,716	-				-0.3
268,744	-				-1.2
268,744	-				-1.0
268,745	+				-2.2
268,745	+				-0.7
268,745	+				-0.3
268,745	+				-0.3
268,745	+				+0.3
268,745	+				-0.0
268,745	+				-1.0
268,746	-				-1.2
268,746	-				-0.5
268,746	-				-0.7
268,746	-				-0.3
268,746	-				-1.2
268,746	-				-1.0
268,755	+				-0.0
268,756	-				-1.0
268,897	+		Sama_0245	0.24	-0.3
268,980	-		Sama_0245	0.36	-0.0
269,055	+		Sama_0245	0.48	-3.2
269,070	-		Sama_0245	0.50	-0.3
269,081	-		Sama_0245	0.52	-0.7
269,133	+		Sama_0245	0.60	-0.7
269,133	+		Sama_0245	0.60	-0.5
269,134	-		Sama_0245	0.60	-1.0
269,138	+		Sama_0245	0.61	-0.0
269,138	+		Sama_0245	0.61	-1.3
269,139	-		Sama_0245	0.61	+0.3
269,139	-		Sama_0245	0.61	-0.7
269,139	-		Sama_0245	0.61	-1.2
269,139	-		Sama_0245	0.61	-0.9
269,282	-		Sama_0245	0.83	-0.7
269,361	-				-0.8
269,387	+				-1.3
269,388	-				-0.3
269,405	+				-1.5
269,405	+				-2.0
269,406	-				+0.3
269,406	-				-1.4
269,406	-				-1.0
269,406	-				-0.5
269,416	-				-0.5
269,430	-				+0.5
269,432	+				-0.8
269,433	-				-0.4
269,433	-				-0.0
269,433	-				-0.7
269,433	-				-1.6
269,433	-				-1.9
269,433	-				-0.4
269,433	-				-0.6
269,437	+				-0.5
269,437	+				+1.3
269,438	-				+0.5
269,438	-				+1.1
269,438	-				-1.4
269,438	-				-0.5
269,438	-				-0.6
269,438	-				+0.4
269,438	-				-0.3
269,438	-				+0.5
269,456	-				+0.3
269,466	+				-0.1
269,466	+				+1.4
269,466	+				-0.4
269,467	-				+1.1
269,467	-				-0.9
269,467	-				+0.2
269,471	+				+1.0
269,471	+				-0.1
269,471	+				-1.5
269,472	-				+0.2
269,472	-				-0.1
269,472	-				-0.5
269,472	-				+0.7
269,475	+				-0.0
269,475	+				-0.8
269,476	-				+0.2
269,476	-				-1.0
269,500	+				-1.2
269,501	-				-1.5
269,501	-				-0.5
269,501	-				-0.1
269,529	+				-0.3
269,539	+				-0.0
269,540	-				-0.0
269,541	+				-1.0
269,542	-				-1.5
269,542	-				-2.8
269,542	-				+1.0
269,560	+				-0.5
269,560	+				+0.2
269,625	+				+0.3
269,625	+				-0.0
269,625	+				-0.1
269,626	-				-1.7
269,626	-				-0.5
269,633	+				-1.6
269,642	+				-0.4
269,679	+				-1.8
269,679	+				+0.4
269,679	+				-0.2
269,679	+				-0.3
269,679	+				-0.7
269,679	+				+1.1
269,679	+				-0.7
269,679	+				+0.0
269,679	+				-1.5
269,679	+				+0.1
269,679	+				-0.7
269,679	+				-0.5
269,680	-				-0.2
269,680	-				+0.1
269,680	-				-0.5
269,680	-				-0.0
269,680	-				-0.9
269,680	-				-0.7
269,680	-				-0.2
269,680	-				-1.3
269,680	-				-0.5
269,683	+				-0.1
269,683	+				-0.5
269,684	-				-0.5
269,684	-				-1.3
269,693	-				+0.3
269,720	-				-1.7
269,720	-				-1.3
269,734	+				-2.4
269,734	+				-0.3
269,734	+				-1.9
269,734	+				-0.3
269,735	-				-1.5
269,735	-				+0.3
269,735	-				-0.0
269,735	-				-0.9
269,747	+		Sama_0246	0.14	-0.5
269,747	+		Sama_0246	0.14	-2.7
269,762	-		Sama_0246	0.19	+0.3
269,785	+		Sama_0246	0.27	-0.5
269,785	+		Sama_0246	0.27	-0.0
269,785	+		Sama_0246	0.27	-2.1
269,786	-		Sama_0246	0.27	-0.2
269,786	-		Sama_0246	0.27	-2.7
269,786	-		Sama_0246	0.27	-0.0
269,786	-		Sama_0246	0.27	-0.7
269,786	-		Sama_0246	0.27	-1.2
269,787	+		Sama_0246	0.28	-1.2
269,787	+		Sama_0246	0.28	-1.2
269,787	+		Sama_0246	0.28	-0.4
269,787	+		Sama_0246	0.28	+0.2
269,787	+		Sama_0246	0.28	-0.5
269,787	+		Sama_0246	0.28	-0.8
269,788	-		Sama_0246	0.28	-1.4
269,788	-		Sama_0246	0.28	+1.7
269,789	+		Sama_0246	0.28	-2.0
269,789	+		Sama_0246	0.28	-1.0
269,789	+		Sama_0246	0.28	-0.9
269,789	+		Sama_0246	0.28	-1.4
269,789	+		Sama_0246	0.28	-0.4
269,789	+		Sama_0246	0.28	+0.3
269,789	+		Sama_0246	0.28	-1.5
269,789	+		Sama_0246	0.28	+0.3
269,789	+		Sama_0246	0.28	+0.5
269,789	+		Sama_0246	0.28	-1.7
269,790	-		Sama_0246	0.29	+1.7
269,790	-		Sama_0246	0.29	+0.7
269,790	-		Sama_0246	0.29	-1.7
269,790	-		Sama_0246	0.29	-0.5
269,790	-		Sama_0246	0.29	-0.0
269,790	-		Sama_0246	0.29	-1.9
269,806	+		Sama_0246	0.34	+0.4
269,806	+		Sama_0246	0.34	+0.7
269,807	-		Sama_0246	0.34	-0.5
269,807	-		Sama_0246	0.34	-0.3
269,807	-		Sama_0246	0.34	-0.3
269,807	-		Sama_0246	0.34	-0.0
269,807	-		Sama_0246	0.34	-0.9
269,824	+		Sama_0246	0.40	+0.0
269,882	+		Sama_0246	0.60	-0.7
269,882	+		Sama_0246	0.60	-0.7
269,955	-		Sama_0246	0.85	+0.6
270,008	+				-0.7
270,008	+				-0.5
270,008	+				-0.3
270,008	+				-1.6
270,009	-				+0.6
270,009	-				-0.5
270,042	-				+0.1
270,118	+				+1.3
270,118	+				-0.5
270,123	+				+1.0
270,124	-				+0.5
270,131	+				-0.4
270,131	+				-0.8
270,131	+				+0.9
270,132	-				-0.9
270,149	+				+0.5
270,150	-				+0.1
270,170	-				-0.9
270,170	-				-0.0
270,207	+				+1.1
270,207	+				+0.1
270,207	+				+0.3
270,208	-				-0.0
270,208	-				-2.0
270,219	+				-0.7
270,220	-				-0.5
270,220	-				+0.5
270,220	+				+0.3
270,241	-				+0.7
270,315	+		Sama_0247	0.13	+0.2
270,316	-		Sama_0247	0.13	-1.5
270,316	-		Sama_0247	0.13	-0.9
270,324	+		Sama_0247	0.14	-0.3
270,324	+		Sama_0247	0.14	-1.6
270,325	-		Sama_0247	0.14	-0.9
270,325	-		Sama_0247	0.14	-2.5
270,325	-		Sama_0247	0.14	-0.0
270,339	+		Sama_0247	0.15	+0.5
270,340	-		Sama_0247	0.15	-0.5
270,340	-		Sama_0247	0.15	+1.0
270,340	-		Sama_0247	0.15	-0.0