Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0177 and Sama_0178 are separated by 1 nucleotides Sama_0178 and Sama_0179 are separated by 19 nucleotides Sama_0179 and Sama_0180 are separated by 41 nucleotides Sama_0180 and Sama_0181 are separated by 61 nucleotides
Sama_0177: Sama_0177 - general secretion pathway protein L (RefSeq), at 206,384 to 207,580
_0177
Sama_0178: Sama_0178 - general secretion pathway protein M (RefSeq), at 207,582 to 208,058
_0178
Sama_0179: Sama_0179 - general secretion pathway protein N (RefSeq), at 208,078 to 208,833
_0179
Sama_0180: Sama_0180 - hypothetical protein (RefSeq), at 208,875 to 209,603
_0180
Sama_0181: Sama_0181 - hypothetical protein (RefSeq), at 209,665 to 210,438
_0181
Position (kb) 208
209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 207.087 kb on - strand, within Sama_0177 at 207.309 kb on + strand, within Sama_0177 at 207.588 kb on - strand at 207.588 kb on - strand at 207.653 kb on + strand, within Sama_0178 at 207.911 kb on - strand, within Sama_0178 at 208.040 kb on + strand at 208.041 kb on - strand at 208.072 kb on + strand at 208.112 kb on + strand at 208.119 kb on - strand at 208.196 kb on + strand, within Sama_0179 at 208.203 kb on + strand, within Sama_0179 at 208.203 kb on + strand, within Sama_0179 at 208.263 kb on + strand, within Sama_0179 at 208.263 kb on + strand, within Sama_0179 at 208.273 kb on - strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.284 kb on + strand, within Sama_0179 at 208.284 kb on + strand, within Sama_0179 at 208.284 kb on + strand, within Sama_0179 at 208.284 kb on + strand, within Sama_0179 at 208.284 kb on + strand, within Sama_0179 at 208.398 kb on + strand, within Sama_0179 at 208.398 kb on + strand, within Sama_0179 at 208.398 kb on + strand, within Sama_0179 at 208.399 kb on - strand, within Sama_0179 at 208.399 kb on - strand, within Sama_0179 at 208.403 kb on + strand, within Sama_0179 at 208.403 kb on + strand, within Sama_0179 at 208.403 kb on + strand, within Sama_0179 at 208.404 kb on - strand, within Sama_0179 at 208.404 kb on - strand, within Sama_0179 at 208.485 kb on - strand, within Sama_0179 at 208.492 kb on + strand, within Sama_0179 at 208.493 kb on - strand, within Sama_0179 at 208.493 kb on - strand, within Sama_0179 at 208.493 kb on - strand, within Sama_0179 at 208.511 kb on + strand, within Sama_0179 at 208.511 kb on + strand, within Sama_0179 at 208.511 kb on + strand, within Sama_0179 at 208.512 kb on - strand, within Sama_0179 at 208.535 kb on + strand, within Sama_0179 at 208.535 kb on + strand, within Sama_0179 at 208.535 kb on + strand, within Sama_0179 at 208.535 kb on + strand, within Sama_0179 at 208.536 kb on - strand, within Sama_0179 at 208.536 kb on - strand, within Sama_0179 at 208.536 kb on - strand, within Sama_0179 at 208.539 kb on + strand, within Sama_0179 at 208.558 kb on - strand, within Sama_0179 at 208.577 kb on - strand, within Sama_0179 at 208.577 kb on - strand, within Sama_0179 at 208.577 kb on - strand, within Sama_0179 at 208.577 kb on - strand, within Sama_0179 at 208.647 kb on + strand, within Sama_0179 at 208.648 kb on - strand, within Sama_0179 at 208.713 kb on + strand, within Sama_0179 at 208.746 kb on + strand, within Sama_0179 at 208.746 kb on + strand, within Sama_0179 at 208.792 kb on + strand at 208.792 kb on + strand at 208.792 kb on + strand at 208.792 kb on + strand at 208.795 kb on + strand at 208.795 kb on + strand at 208.874 kb on - strand at 208.874 kb on - strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.887 kb on - strand at 208.887 kb on - strand at 208.887 kb on - strand at 208.919 kb on + strand at 208.919 kb on + strand at 208.920 kb on - strand at 208.926 kb on + strand at 208.926 kb on + strand at 208.926 kb on + strand at 208.926 kb on + strand at 208.926 kb on + strand at 208.926 kb on + strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.931 kb on - strand at 208.931 kb on - strand at 208.931 kb on - strand at 208.931 kb on - strand at 208.993 kb on - strand, within Sama_0180 at 208.993 kb on - strand, within Sama_0180 at 208.993 kb on - strand, within Sama_0180 at 209.032 kb on + strand, within Sama_0180 at 209.033 kb on - strand, within Sama_0180 at 209.033 kb on - strand, within Sama_0180 at 209.033 kb on - strand, within Sama_0180 at 209.052 kb on + strand, within Sama_0180 at 209.087 kb on + strand, within Sama_0180 at 209.087 kb on + strand, within Sama_0180 at 209.088 kb on - strand, within Sama_0180 at 209.104 kb on + strand, within Sama_0180 at 209.104 kb on + strand, within Sama_0180 at 209.105 kb on - strand, within Sama_0180 at 209.162 kb on + strand, within Sama_0180 at 209.172 kb on - strand, within Sama_0180 at 209.183 kb on + strand, within Sama_0180 at 209.183 kb on + strand, within Sama_0180 at 209.184 kb on - strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.235 kb on - strand, within Sama_0180 at 209.235 kb on - strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.311 kb on + strand, within Sama_0180 at 209.325 kb on + strand, within Sama_0180 at 209.325 kb on + strand, within Sama_0180 at 209.326 kb on - strand, within Sama_0180 at 209.326 kb on - strand, within Sama_0180 at 209.326 kb on - strand, within Sama_0180 at 209.390 kb on + strand, within Sama_0180 at 209.390 kb on + strand, within Sama_0180 at 209.390 kb on + strand, within Sama_0180 at 209.391 kb on - strand, within Sama_0180 at 209.469 kb on + strand, within Sama_0180 at 209.470 kb on - strand, within Sama_0180 at 209.470 kb on - strand, within Sama_0180 at 209.470 kb on - strand, within Sama_0180 at 209.508 kb on + strand, within Sama_0180 at 209.508 kb on + strand, within Sama_0180 at 209.508 kb on + strand, within Sama_0180 at 209.508 kb on + strand, within Sama_0180 at 209.508 kb on + strand, within Sama_0180 at 209.509 kb on - strand, within Sama_0180 at 209.509 kb on - strand, within Sama_0180 at 209.583 kb on + strand at 209.583 kb on + strand at 209.583 kb on + strand at 209.583 kb on + strand at 209.583 kb on + strand at 209.604 kb on - strand at 209.616 kb on + strand at 209.616 kb on + strand at 209.616 kb on + strand at 209.617 kb on - strand at 209.617 kb on - strand at 209.617 kb on - strand at 209.630 kb on + strand at 209.631 kb on - strand at 209.631 kb on - strand at 209.632 kb on + strand at 209.632 kb on + strand at 209.632 kb on + strand at 209.632 kb on + strand at 209.632 kb on + strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.680 kb on + strand at 209.680 kb on + strand at 209.680 kb on + strand at 209.681 kb on - strand at 209.681 kb on - strand at 209.681 kb on - strand at 209.701 kb on + strand at 209.701 kb on + strand at 209.702 kb on - strand at 209.702 kb on - strand at 209.702 kb on - strand at 209.702 kb on - strand at 209.702 kb on - strand at 209.729 kb on + strand at 209.729 kb on + strand at 209.729 kb on + strand at 209.729 kb on + strand at 209.729 kb on + strand at 209.729 kb on + strand at 209.730 kb on - strand at 209.730 kb on - strand at 209.730 kb on - strand at 209.730 kb on - strand at 209.746 kb on + strand, within Sama_0181 at 209.746 kb on + strand, within Sama_0181 at 209.747 kb on - strand, within Sama_0181 at 209.747 kb on - strand, within Sama_0181 at 209.747 kb on - strand, within Sama_0181 at 209.747 kb on - strand, within Sama_0181 at 209.831 kb on + strand, within Sama_0181
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 207,087 - Sama_0177 0.59 +0.7 207,309 + Sama_0177 0.77 +0.3 207,588 - +0.4 207,588 - +0.3 207,653 + Sama_0178 0.15 -0.0 207,911 - Sama_0178 0.69 +1.3 208,040 + -0.3 208,041 - +0.3 208,072 + -0.4 208,112 + -0.3 208,119 - +0.3 208,196 + Sama_0179 0.16 +0.3 208,203 + Sama_0179 0.17 -1.3 208,203 + Sama_0179 0.17 +2.3 208,263 + Sama_0179 0.24 -0.5 208,263 + Sama_0179 0.24 -0.0 208,273 - Sama_0179 0.26 -0.3 208,274 + Sama_0179 0.26 -0.2 208,274 + Sama_0179 0.26 -0.3 208,274 + Sama_0179 0.26 +2.3 208,274 + Sama_0179 0.26 +0.3 208,274 + Sama_0179 0.26 +0.3 208,274 + Sama_0179 0.26 -0.3 208,274 + Sama_0179 0.26 +0.7 208,274 + Sama_0179 0.26 -0.5 208,274 + Sama_0179 0.26 +2.3 208,274 + Sama_0179 0.26 +0.3 208,274 + Sama_0179 0.26 +2.3 208,274 + Sama_0179 0.26 +0.7 208,275 - Sama_0179 0.26 -0.0 208,275 - Sama_0179 0.26 +1.7 208,275 - Sama_0179 0.26 -0.0 208,275 - Sama_0179 0.26 +0.7 208,275 - Sama_0179 0.26 -0.3 208,275 - Sama_0179 0.26 +1.3 208,275 - Sama_0179 0.26 -0.3 208,275 - Sama_0179 0.26 +0.7 208,275 - Sama_0179 0.26 +0.3 208,275 - Sama_0179 0.26 -0.0 208,275 - Sama_0179 0.26 +1.0 208,275 - Sama_0179 0.26 +0.6 208,284 + Sama_0179 0.27 -0.0 208,284 + Sama_0179 0.27 -0.3 208,284 + Sama_0179 0.27 +0.7 208,284 + Sama_0179 0.27 +2.3 208,284 + Sama_0179 0.27 +0.7 208,398 + Sama_0179 0.42 +0.2 208,398 + Sama_0179 0.42 +1.3 208,398 + Sama_0179 0.42 +0.9 208,399 - Sama_0179 0.42 -0.9 208,399 - Sama_0179 0.42 +0.7 208,403 + Sama_0179 0.43 +0.2 208,403 + Sama_0179 0.43 +0.6 208,403 + Sama_0179 0.43 -0.8 208,404 - Sama_0179 0.43 -0.9 208,404 - Sama_0179 0.43 +0.9 208,485 - Sama_0179 0.54 +0.4 208,492 + Sama_0179 0.55 +0.2 208,493 - Sama_0179 0.55 -1.3 208,493 - Sama_0179 0.55 -0.2 208,493 - Sama_0179 0.55 +0.3 208,511 + Sama_0179 0.57 +1.1 208,511 + Sama_0179 0.57 +1.3 208,511 + Sama_0179 0.57 -0.4 208,512 - Sama_0179 0.57 -1.2 208,535 + Sama_0179 0.60 -0.9 208,535 + Sama_0179 0.60 -0.5 208,535 + Sama_0179 0.60 +2.9 208,535 + Sama_0179 0.60 +1.7 208,536 - Sama_0179 0.61 -0.3 208,536 - Sama_0179 0.61 -2.2 208,536 - Sama_0179 0.61 -0.9 208,539 + Sama_0179 0.61 -0.5 208,558 - Sama_0179 0.63 -0.0 208,577 - Sama_0179 0.66 -1.4 208,577 - Sama_0179 0.66 +0.7 208,577 - Sama_0179 0.66 -0.9 208,577 - Sama_0179 0.66 -0.1 208,647 + Sama_0179 0.75 -0.7 208,648 - Sama_0179 0.75 +0.1 208,713 + Sama_0179 0.84 -0.3 208,746 + Sama_0179 0.88 -0.0 208,746 + Sama_0179 0.88 -1.6 208,792 + -0.3 208,792 + +1.6 208,792 + -0.6 208,792 + +0.5 208,795 + +0.3 208,795 + +0.7 208,874 - -0.4 208,874 - +0.3 208,886 + -1.0 208,886 + -1.9 208,886 + -0.2 208,886 + +0.8 208,886 + +0.3 208,886 + -0.0 208,886 + -3.1 208,886 + -0.2 208,886 + -1.3 208,886 + -0.3 208,886 + -0.8 208,886 + +0.2 208,886 + +0.2 208,887 - -0.5 208,887 - -0.5 208,887 - +1.6 208,919 + -0.2 208,919 + -1.2 208,920 - -0.4 208,926 + +0.5 208,926 + +0.7 208,926 + -0.2 208,926 + +0.5 208,926 + +0.5 208,926 + +0.7 208,927 - +0.3 208,927 - -0.6 208,927 - -2.2 208,927 - -0.1 208,927 - +1.0 208,927 - -0.4 208,927 - +0.8 208,927 - +0.3 208,927 - -0.8 208,927 - +0.3 208,927 - -2.1 208,927 - +0.7 208,927 - +1.6 208,927 - -1.4 208,930 + -1.2 208,930 + +0.7 208,930 + +2.3 208,930 + +0.3 208,930 + +0.6 208,930 + -1.9 208,930 + -0.1 208,930 + -0.5 208,930 + -0.5 208,930 + -0.5 208,930 + +0.1 208,931 - +0.0 208,931 - -0.2 208,931 - -0.2 208,931 - -0.8 208,993 - Sama_0180 0.16 -0.9 208,993 - Sama_0180 0.16 -0.2 208,993 - Sama_0180 0.16 -0.4 209,032 + Sama_0180 0.22 -2.0 209,033 - Sama_0180 0.22 +0.7 209,033 - Sama_0180 0.22 +0.2 209,033 - Sama_0180 0.22 -0.4 209,052 + Sama_0180 0.24 -0.5 209,087 + Sama_0180 0.29 +0.1 209,087 + Sama_0180 0.29 +0.5 209,088 - Sama_0180 0.29 +0.3 209,104 + Sama_0180 0.31 -0.7 209,104 + Sama_0180 0.31 +0.9 209,105 - Sama_0180 0.32 +2.1 209,162 + Sama_0180 0.39 +0.7 209,172 - Sama_0180 0.41 +0.4 209,183 + Sama_0180 0.42 +0.2 209,183 + Sama_0180 0.42 -0.4 209,184 - Sama_0180 0.42 -3.4 209,234 + Sama_0180 0.49 -1.6 209,234 + Sama_0180 0.49 -1.4 209,234 + Sama_0180 0.49 +0.9 209,234 + Sama_0180 0.49 +0.8 209,234 + Sama_0180 0.49 -0.8 209,234 + Sama_0180 0.49 -1.0 209,234 + Sama_0180 0.49 -0.2 209,234 + Sama_0180 0.49 +1.6 209,235 - Sama_0180 0.49 +1.3 209,235 - Sama_0180 0.49 -0.4 209,236 + Sama_0180 0.50 +1.0 209,236 + Sama_0180 0.50 +0.8 209,236 + Sama_0180 0.50 -0.4 209,236 + Sama_0180 0.50 +0.5 209,236 + Sama_0180 0.50 -0.1 209,236 + Sama_0180 0.50 +0.6 209,236 + Sama_0180 0.50 -0.2 209,236 + Sama_0180 0.50 -1.3 209,236 + Sama_0180 0.50 +0.5 209,237 - Sama_0180 0.50 +0.3 209,237 - Sama_0180 0.50 -0.1 209,237 - Sama_0180 0.50 -0.6 209,237 - Sama_0180 0.50 +0.0 209,237 - Sama_0180 0.50 -0.3 209,237 - Sama_0180 0.50 -0.4 209,237 - Sama_0180 0.50 -0.4 209,237 - Sama_0180 0.50 +1.2 209,237 - Sama_0180 0.50 -0.3 209,237 - Sama_0180 0.50 -0.0 209,237 - Sama_0180 0.50 -0.6 209,237 - Sama_0180 0.50 -0.0 209,237 - Sama_0180 0.50 +0.2 209,237 - Sama_0180 0.50 -0.5 209,237 - Sama_0180 0.50 -1.2 209,237 - Sama_0180 0.50 +0.4 209,237 - Sama_0180 0.50 -0.2 209,237 - Sama_0180 0.50 +0.8 209,237 - Sama_0180 0.50 +1.7 209,237 - Sama_0180 0.50 -0.4 209,237 - Sama_0180 0.50 +0.3 209,237 - Sama_0180 0.50 -0.3 209,311 + Sama_0180 0.60 -0.1 209,325 + Sama_0180 0.62 +0.4 209,325 + Sama_0180 0.62 -0.7 209,326 - Sama_0180 0.62 +0.0 209,326 - Sama_0180 0.62 -1.2 209,326 - Sama_0180 0.62 -1.7 209,390 + Sama_0180 0.71 -0.2 209,390 + Sama_0180 0.71 -0.9 209,390 + Sama_0180 0.71 -0.0 209,391 - Sama_0180 0.71 -1.7 209,469 + Sama_0180 0.81 +0.2 209,470 - Sama_0180 0.82 +0.7 209,470 - Sama_0180 0.82 -1.0 209,470 - Sama_0180 0.82 +0.6 209,508 + Sama_0180 0.87 +0.9 209,508 + Sama_0180 0.87 -0.8 209,508 + Sama_0180 0.87 -0.0 209,508 + Sama_0180 0.87 +0.1 209,508 + Sama_0180 0.87 +1.1 209,509 - Sama_0180 0.87 -0.4 209,509 - Sama_0180 0.87 +1.0 209,583 + -1.1 209,583 + -0.3 209,583 + -0.1 209,583 + -0.1 209,583 + -0.8 209,604 - +1.0 209,616 + +0.9 209,616 + -1.6 209,616 + +0.4 209,617 - +0.6 209,617 - -0.5 209,617 - +1.7 209,630 + +1.3 209,631 - +1.0 209,631 - -0.1 209,632 + -0.5 209,632 + +0.4 209,632 + -0.0 209,632 + -0.9 209,632 + +0.0 209,633 - -0.5 209,633 - -1.7 209,633 - +1.4 209,633 - -0.7 209,633 - -1.0 209,633 - +0.3 209,633 - -1.1 209,633 - +0.2 209,633 - +1.6 209,680 + +0.6 209,680 + +1.1 209,680 + +0.4 209,681 - -1.0 209,681 - +0.1 209,681 - -0.5 209,701 + -2.2 209,701 + -0.1 209,702 - +0.6 209,702 - -1.0 209,702 - +0.7 209,702 - -0.1 209,702 - +0.6 209,729 + +1.6 209,729 + +0.6 209,729 + -2.7 209,729 + -0.3 209,729 + +1.9 209,729 + +0.1 209,730 - +1.6 209,730 - -0.3 209,730 - +1.0 209,730 - -1.1 209,746 + Sama_0181 0.10 +1.1 209,746 + Sama_0181 0.10 -0.7 209,747 - Sama_0181 0.11 -0.9 209,747 - Sama_0181 0.11 +0.1 209,747 - Sama_0181 0.11 -1.5 209,747 - Sama_0181 0.11 +0.1 209,831 + Sama_0181 0.21 +0.3
Or see this region's nucleotide sequence