Strain Fitness in Shewanella amazonensis SB2B around Sama_0169

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0168 and Sama_0169 are separated by 26 nucleotidesSama_0169 and Sama_0170 are separated by 10 nucleotides Sama_0168: Sama_0168 - general secretion pathway protein C (RefSeq), at 197,297 to 198,220 _0168 Sama_0169: Sama_0169 - type II and III secretion system protein (RefSeq), at 198,247 to 200,358 _0169 Sama_0170: Sama_0170 - general secretion pathway protein E (RefSeq), at 200,369 to 201,931 _0170 Position (kb) 198 199 200 201Strain fitness (log2 ratio) -1 0 1 2at 197.279 kb on + strandat 197.291 kb on + strandat 197.292 kb on - strandat 197.512 kb on + strand, within Sama_0168at 197.512 kb on + strand, within Sama_0168at 197.513 kb on - strand, within Sama_0168at 197.691 kb on - strand, within Sama_0168at 197.808 kb on - strand, within Sama_0168at 197.808 kb on - strand, within Sama_0168at 197.824 kb on + strand, within Sama_0168at 197.824 kb on + strand, within Sama_0168at 197.835 kb on + strand, within Sama_0168at 197.966 kb on + strand, within Sama_0168at 197.966 kb on + strand, within Sama_0168at 197.966 kb on + strand, within Sama_0168at 197.966 kb on + strand, within Sama_0168at 197.966 kb on + strand, within Sama_0168at 198.171 kb on + strandat 198.171 kb on + strandat 198.171 kb on + strandat 198.171 kb on + strandat 198.218 kb on + strandat 198.230 kb on + strandat 198.240 kb on + strandat 198.240 kb on + strandat 198.241 kb on - strandat 198.241 kb on - strandat 198.245 kb on - strandat 198.297 kb on + strandat 198.390 kb on + strandat 198.391 kb on - strandat 198.488 kb on - strand, within Sama_0169at 198.520 kb on + strand, within Sama_0169at 198.521 kb on - strand, within Sama_0169at 198.661 kb on + strand, within Sama_0169at 198.662 kb on - strand, within Sama_0169at 198.735 kb on + strand, within Sama_0169at 198.739 kb on + strand, within Sama_0169at 198.740 kb on - strand, within Sama_0169at 198.816 kb on - strand, within Sama_0169at 198.816 kb on - strand, within Sama_0169at 198.819 kb on + strand, within Sama_0169at 198.966 kb on + strand, within Sama_0169at 198.967 kb on - strand, within Sama_0169at 198.969 kb on + strand, within Sama_0169at 199.075 kb on + strand, within Sama_0169at 199.197 kb on + strand, within Sama_0169at 199.494 kb on + strand, within Sama_0169at 199.654 kb on - strand, within Sama_0169at 199.695 kb on + strand, within Sama_0169at 199.750 kb on - strand, within Sama_0169at 199.780 kb on - strand, within Sama_0169at 200.017 kb on - strand, within Sama_0169at 200.085 kb on + strand, within Sama_0169at 200.143 kb on + strand, within Sama_0169at 200.150 kb on - strandat 200.281 kb on + strandat 200.338 kb on + strandat 200.338 kb on + strandat 200.339 kb on - strandat 200.356 kb on + strandat 200.368 kb on + strandat 200.862 kb on - strand, within Sama_0170at 200.862 kb on - strand, within Sama_0170at 200.930 kb on - strand, within Sama_0170at 201.026 kb on - strand, within Sama_0170at 201.119 kb on - strand, within Sama_0170at 201.311 kb on + strand, within Sama_0170at 201.325 kb on + strand, within Sama_0170at 201.326 kb on - strand, within Sama_0170at 201.327 kb on + strand, within Sama_0170at 201.328 kb on - strand, within Sama_0170

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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197,279 + +0.2
197,291 + -0.2
197,292 - +0.3
197,512 + Sama_0168 0.23 -0.9
197,512 + Sama_0168 0.23 -0.5
197,513 - Sama_0168 0.23 +0.7
197,691 - Sama_0168 0.43 +1.3
197,808 - Sama_0168 0.55 +2.3
197,808 - Sama_0168 0.55 -0.0
197,824 + Sama_0168 0.57 -0.0
197,824 + Sama_0168 0.57 -0.3
197,835 + Sama_0168 0.58 -1.2
197,966 + Sama_0168 0.72 +0.2
197,966 + Sama_0168 0.72 +0.0
197,966 + Sama_0168 0.72 -0.4
197,966 + Sama_0168 0.72 +0.3
197,966 + Sama_0168 0.72 +1.0
198,171 + +0.9
198,171 + -0.0
198,171 + +0.5
198,171 + +1.6
198,218 + -1.0
198,230 + +1.0
198,240 + -0.9
198,240 + -1.2
198,241 - +0.3
198,241 - -0.7
198,245 - +2.3
198,297 + -0.0
198,390 + -0.3
198,391 - +0.6
198,488 - Sama_0169 0.11 +0.3
198,520 + Sama_0169 0.13 +0.3
198,521 - Sama_0169 0.13 +0.3
198,661 + Sama_0169 0.20 +1.7
198,662 - Sama_0169 0.20 -0.3
198,735 + Sama_0169 0.23 +0.7
198,739 + Sama_0169 0.23 -0.0
198,740 - Sama_0169 0.23 +0.5
198,816 - Sama_0169 0.27 +1.3
198,816 - Sama_0169 0.27 +2.3
198,819 + Sama_0169 0.27 +0.3
198,966 + Sama_0169 0.34 -0.0
198,967 - Sama_0169 0.34 -1.4
198,969 + Sama_0169 0.34 -0.3
199,075 + Sama_0169 0.39 +1.3
199,197 + Sama_0169 0.45 +1.1
199,494 + Sama_0169 0.59 -0.3
199,654 - Sama_0169 0.67 -0.0
199,695 + Sama_0169 0.69 -0.5
199,750 - Sama_0169 0.71 +0.7
199,780 - Sama_0169 0.73 -0.0
200,017 - Sama_0169 0.84 +0.7
200,085 + Sama_0169 0.87 -0.0
200,143 + Sama_0169 0.90 -0.7
200,150 - +2.3
200,281 + -0.4
200,338 + +1.0
200,338 + -0.8
200,339 - +0.3
200,356 + -0.0
200,368 + -0.0
200,862 - Sama_0170 0.32 +1.3
200,862 - Sama_0170 0.32 +0.7
200,930 - Sama_0170 0.36 -0.3
201,026 - Sama_0170 0.42 -0.0
201,119 - Sama_0170 0.48 +0.7
201,311 + Sama_0170 0.60 +1.3
201,325 + Sama_0170 0.61 -0.3
201,326 - Sama_0170 0.61 +1.4
201,327 + Sama_0170 0.61 +1.3
201,328 - Sama_0170 0.61 +1.3

Or see this region's nucleotide sequence