Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07920

Experiment: Glycine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07910 and PGA1_c07920 are separated by 26 nucleotidesPGA1_c07920 and PGA1_c07930 overlap by 4 nucleotidesPGA1_c07930 and PGA1_c07940 are separated by 129 nucleotides PGA1_c07910: PGA1_c07910 - ABC-type Fe3+ transport system, periplasmic component, at 820,800 to 821,822 _c07910 PGA1_c07920: PGA1_c07920 - signal transduction histidine kinase, at 821,849 to 823,264 _c07920 PGA1_c07930: PGA1_c07930 - two-component system response regulator, at 823,261 to 823,926 _c07930 PGA1_c07940: PGA1_c07940 - Uncharacterized protein conserved in bacteria, at 824,056 to 825,033 _c07940 Position (kb) 821 822 823 824Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 820.884 kb on + strandat 820.909 kb on - strand, within PGA1_c07910at 820.925 kb on - strand, within PGA1_c07910at 820.953 kb on - strand, within PGA1_c07910at 821.047 kb on - strand, within PGA1_c07910at 821.054 kb on + strand, within PGA1_c07910at 821.054 kb on + strand, within PGA1_c07910at 821.138 kb on - strand, within PGA1_c07910at 821.139 kb on + strand, within PGA1_c07910at 821.210 kb on + strand, within PGA1_c07910at 821.254 kb on + strand, within PGA1_c07910at 821.280 kb on + strand, within PGA1_c07910at 821.314 kb on - strand, within PGA1_c07910at 821.369 kb on + strand, within PGA1_c07910at 821.377 kb on - strand, within PGA1_c07910at 821.387 kb on + strand, within PGA1_c07910at 821.589 kb on + strand, within PGA1_c07910at 821.597 kb on - strand, within PGA1_c07910at 821.617 kb on - strand, within PGA1_c07910at 821.690 kb on - strand, within PGA1_c07910at 821.723 kb on + strandat 821.838 kb on + strandat 821.846 kb on - strandat 821.846 kb on - strandat 822.049 kb on + strand, within PGA1_c07920at 822.098 kb on + strand, within PGA1_c07920at 822.218 kb on - strand, within PGA1_c07920at 822.228 kb on + strand, within PGA1_c07920at 822.233 kb on + strand, within PGA1_c07920at 822.647 kb on - strand, within PGA1_c07920at 822.685 kb on + strand, within PGA1_c07920at 822.695 kb on + strand, within PGA1_c07920at 822.759 kb on - strand, within PGA1_c07920at 822.803 kb on + strand, within PGA1_c07920at 822.811 kb on - strand, within PGA1_c07920at 822.888 kb on + strand, within PGA1_c07920at 822.898 kb on + strand, within PGA1_c07920at 822.927 kb on - strand, within PGA1_c07920at 823.034 kb on - strand, within PGA1_c07920at 823.036 kb on + strand, within PGA1_c07920at 823.112 kb on - strand, within PGA1_c07920at 823.252 kb on - strandat 823.281 kb on + strandat 823.296 kb on + strandat 823.311 kb on + strandat 823.319 kb on - strandat 823.321 kb on + strandat 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.329 kb on - strand, within PGA1_c07930at 823.459 kb on + strand, within PGA1_c07930at 823.467 kb on - strand, within PGA1_c07930at 823.467 kb on - strand, within PGA1_c07930at 823.472 kb on - strand, within PGA1_c07930at 823.500 kb on + strand, within PGA1_c07930at 823.500 kb on + strand, within PGA1_c07930at 823.500 kb on + strand, within PGA1_c07930at 823.508 kb on - strand, within PGA1_c07930at 823.508 kb on - strand, within PGA1_c07930at 823.508 kb on - strand, within PGA1_c07930at 823.508 kb on - strand, within PGA1_c07930at 823.584 kb on - strand, within PGA1_c07930at 823.646 kb on + strand, within PGA1_c07930at 823.856 kb on - strand, within PGA1_c07930at 823.893 kb on + strandat 823.893 kb on + strandat 823.951 kb on + strandat 823.959 kb on - strandat 823.969 kb on - strandat 823.994 kb on + strandat 824.088 kb on + strandat 824.088 kb on - strandat 824.109 kb on + strandat 824.190 kb on + strand, within PGA1_c07940at 824.231 kb on - strand, within PGA1_c07940

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (C)
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820,884 + -1.4
820,909 - PGA1_c07910 0.11 -0.0
820,925 - PGA1_c07910 0.12 -0.3
820,953 - PGA1_c07910 0.15 +0.4
821,047 - PGA1_c07910 0.24 -2.9
821,054 + PGA1_c07910 0.25 +1.4
821,054 + PGA1_c07910 0.25 +0.8
821,138 - PGA1_c07910 0.33 +0.3
821,139 + PGA1_c07910 0.33 -2.7
821,210 + PGA1_c07910 0.40 +2.2
821,254 + PGA1_c07910 0.44 -0.3
821,280 + PGA1_c07910 0.47 -3.3
821,314 - PGA1_c07910 0.50 +1.9
821,369 + PGA1_c07910 0.56 +0.8
821,377 - PGA1_c07910 0.56 -1.4
821,387 + PGA1_c07910 0.57 -0.3
821,589 + PGA1_c07910 0.77 -0.5
821,597 - PGA1_c07910 0.78 -0.2
821,617 - PGA1_c07910 0.80 +2.2
821,690 - PGA1_c07910 0.87 +0.9
821,723 + -1.5
821,838 + -0.8
821,846 - -2.7
821,846 - -1.4
822,049 + PGA1_c07920 0.14 -0.4
822,098 + PGA1_c07920 0.18 +1.2
822,218 - PGA1_c07920 0.26 +0.3
822,228 + PGA1_c07920 0.27 -1.5
822,233 + PGA1_c07920 0.27 +0.5
822,647 - PGA1_c07920 0.56 -1.8
822,685 + PGA1_c07920 0.59 +1.8
822,695 + PGA1_c07920 0.60 -3.0
822,759 - PGA1_c07920 0.64 -2.2
822,803 + PGA1_c07920 0.67 -1.6
822,811 - PGA1_c07920 0.68 -2.5
822,888 + PGA1_c07920 0.73 -0.2
822,898 + PGA1_c07920 0.74 +1.4
822,927 - PGA1_c07920 0.76 -0.3
823,034 - PGA1_c07920 0.84 -2.0
823,036 + PGA1_c07920 0.84 -1.8
823,112 - PGA1_c07920 0.89 +0.8
823,252 - +0.8
823,281 + -2.5
823,296 + +1.2
823,311 + +0.2
823,319 - +0.1
823,321 + -2.9
823,329 - PGA1_c07930 0.10 +1.2
823,329 - PGA1_c07930 0.10 +0.1
823,329 - PGA1_c07930 0.10 -2.6
823,329 - PGA1_c07930 0.10 -1.6
823,329 - PGA1_c07930 0.10 -1.8
823,329 - PGA1_c07930 0.10 -0.7
823,329 - PGA1_c07930 0.10 +1.2
823,329 - PGA1_c07930 0.10 +0.9
823,459 + PGA1_c07930 0.30 -2.6
823,467 - PGA1_c07930 0.31 -1.0
823,467 - PGA1_c07930 0.31 -2.0
823,472 - PGA1_c07930 0.32 -0.2
823,500 + PGA1_c07930 0.36 -2.1
823,500 + PGA1_c07930 0.36 +0.8
823,500 + PGA1_c07930 0.36 +0.1
823,508 - PGA1_c07930 0.37 +1.1
823,508 - PGA1_c07930 0.37 +0.0
823,508 - PGA1_c07930 0.37 +0.8
823,508 - PGA1_c07930 0.37 +0.7
823,584 - PGA1_c07930 0.48 +0.4
823,646 + PGA1_c07930 0.58 -0.2
823,856 - PGA1_c07930 0.89 -0.2
823,893 + -1.6
823,893 + +0.8
823,951 + +1.8
823,959 - +0.2
823,969 - +0.2
823,994 + -0.1
824,088 + -1.0
824,088 - -1.0
824,109 + +1.1
824,190 + PGA1_c07940 0.14 +0.8
824,231 - PGA1_c07940 0.18 +0.4

Or see this region's nucleotide sequence