Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05460 and PGA1_c05470 are separated by 84 nucleotides PGA1_c05470 and PGA1_c05480 are separated by 154 nucleotides PGA1_c05480 and PGA1_c05490 are separated by 43 nucleotides PGA1_c05490 and PGA1_c05500 are separated by 135 nucleotides
PGA1_c05460: PGA1_c05460 - transcriptional regulator, LysR family, at 558,026 to 559,000
_c05460
PGA1_c05470: PGA1_c05470 - hydroxyisourate hydrolase, at 559,085 to 559,456
_c05470
PGA1_c05480: PGA1_c05480 - OHCU decarboxylase domain-containing protein, at 559,611 to 561,026
_c05480
PGA1_c05490: PGA1_c05490 - ureidoglycolate hydrolase AllA, at 561,070 to 561,555
_c05490
PGA1_c05500: PGA1_c05500 - putative purine permease, at 561,691 to 563,118
_c05500
Position (kb) 559
560
561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 558.641 kb on + strand, within PGA1_c05460 at 558.641 kb on + strand, within PGA1_c05460 at 558.651 kb on + strand, within PGA1_c05460 at 558.654 kb on - strand, within PGA1_c05460 at 558.659 kb on - strand, within PGA1_c05460 at 558.659 kb on - strand, within PGA1_c05460 at 558.674 kb on - strand, within PGA1_c05460 at 558.731 kb on + strand, within PGA1_c05460 at 558.892 kb on + strand, within PGA1_c05460 at 558.900 kb on - strand, within PGA1_c05460 at 558.900 kb on - strand, within PGA1_c05460 at 558.952 kb on + strand at 558.974 kb on + strand at 559.003 kb on - strand at 559.392 kb on + strand, within PGA1_c05470 at 559.392 kb on + strand, within PGA1_c05470 at 559.412 kb on + strand, within PGA1_c05470 at 559.489 kb on - strand at 559.505 kb on + strand at 559.505 kb on + strand at 559.505 kb on + strand at 559.512 kb on + strand at 559.512 kb on + strand at 559.520 kb on - strand at 559.567 kb on - strand at 559.729 kb on + strand at 559.753 kb on + strand, within PGA1_c05480 at 559.775 kb on - strand, within PGA1_c05480 at 559.834 kb on - strand, within PGA1_c05480 at 559.874 kb on + strand, within PGA1_c05480 at 559.933 kb on + strand, within PGA1_c05480 at 559.933 kb on + strand, within PGA1_c05480 at 560.012 kb on - strand, within PGA1_c05480 at 560.014 kb on + strand, within PGA1_c05480 at 560.014 kb on + strand, within PGA1_c05480 at 560.014 kb on + strand, within PGA1_c05480 at 560.017 kb on - strand, within PGA1_c05480 at 560.022 kb on + strand, within PGA1_c05480 at 560.022 kb on - strand, within PGA1_c05480 at 560.077 kb on + strand, within PGA1_c05480 at 560.170 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.325 kb on - strand, within PGA1_c05480 at 560.325 kb on - strand, within PGA1_c05480 at 560.325 kb on - strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.335 kb on - strand, within PGA1_c05480 at 560.532 kb on + strand, within PGA1_c05480 at 560.596 kb on - strand, within PGA1_c05480 at 560.631 kb on + strand, within PGA1_c05480 at 560.631 kb on + strand, within PGA1_c05480 at 560.631 kb on + strand, within PGA1_c05480 at 560.639 kb on - strand, within PGA1_c05480 at 560.639 kb on - strand, within PGA1_c05480 at 560.639 kb on - strand, within PGA1_c05480 at 560.714 kb on - strand, within PGA1_c05480 at 560.757 kb on - strand, within PGA1_c05480 at 560.779 kb on - strand, within PGA1_c05480 at 560.786 kb on + strand, within PGA1_c05480 at 560.838 kb on - strand, within PGA1_c05480 at 560.923 kb on + strand at 560.923 kb on + strand at 560.923 kb on + strand at 560.923 kb on + strand at 560.923 kb on + strand at 560.931 kb on - strand at 560.931 kb on - strand at 560.931 kb on - strand at 561.023 kb on - strand at 561.025 kb on + strand at 561.028 kb on - strand at 561.038 kb on + strand at 561.046 kb on - strand at 561.106 kb on - strand at 561.107 kb on + strand at 561.168 kb on + strand, within PGA1_c05490 at 561.207 kb on - strand, within PGA1_c05490 at 561.237 kb on + strand, within PGA1_c05490 at 561.261 kb on + strand, within PGA1_c05490 at 561.284 kb on - strand, within PGA1_c05490 at 561.307 kb on + strand, within PGA1_c05490 at 561.334 kb on - strand, within PGA1_c05490 at 561.350 kb on + strand, within PGA1_c05490 at 561.355 kb on + strand, within PGA1_c05490 at 561.375 kb on - strand, within PGA1_c05490 at 561.416 kb on + strand, within PGA1_c05490 at 561.416 kb on + strand, within PGA1_c05490 at 561.434 kb on + strand, within PGA1_c05490 at 561.514 kb on + strand at 561.530 kb on + strand at 561.583 kb on - strand at 561.645 kb on - strand at 561.689 kb on - strand at 561.689 kb on - strand at 561.689 kb on - strand at 561.713 kb on + strand at 561.753 kb on + strand at 561.753 kb on + strand at 561.753 kb on + strand at 561.761 kb on - strand at 561.761 kb on - strand at 561.789 kb on + strand at 561.792 kb on - strand at 561.797 kb on - strand at 561.797 kb on - strand at 561.853 kb on + strand, within PGA1_c05500 at 561.853 kb on + strand, within PGA1_c05500 at 561.853 kb on + strand, within PGA1_c05500 at 561.853 kb on + strand, within PGA1_c05500 at 561.853 kb on + strand, within PGA1_c05500 at 561.861 kb on - strand, within PGA1_c05500 at 561.861 kb on - strand, within PGA1_c05500 at 561.914 kb on - strand, within PGA1_c05500 at 561.920 kb on + strand, within PGA1_c05500 at 561.976 kb on + strand, within PGA1_c05500 at 561.979 kb on - strand, within PGA1_c05500 at 561.984 kb on - strand, within PGA1_c05500
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 558,641 + PGA1_c05460 0.63 +0.9 558,641 + PGA1_c05460 0.63 +0.3 558,651 + PGA1_c05460 0.64 +0.3 558,654 - PGA1_c05460 0.64 +1.3 558,659 - PGA1_c05460 0.65 +1.2 558,659 - PGA1_c05460 0.65 +2.2 558,674 - PGA1_c05460 0.66 +0.8 558,731 + PGA1_c05460 0.72 +0.1 558,892 + PGA1_c05460 0.89 +0.3 558,900 - PGA1_c05460 0.90 +0.1 558,900 - PGA1_c05460 0.90 +0.8 558,952 + +0.9 558,974 + -0.4 559,003 - -0.3 559,392 + PGA1_c05470 0.83 -2.7 559,392 + PGA1_c05470 0.83 -0.6 559,412 + PGA1_c05470 0.88 -0.9 559,489 - -1.3 559,505 + +0.9 559,505 + +1.4 559,505 + +1.3 559,512 + -0.1 559,512 + +0.3 559,520 - +0.3 559,567 - +0.6 559,729 + +0.6 559,753 + PGA1_c05480 0.10 +1.3 559,775 - PGA1_c05480 0.12 -0.1 559,834 - PGA1_c05480 0.16 +1.0 559,874 + PGA1_c05480 0.19 -0.1 559,933 + PGA1_c05480 0.23 -0.9 559,933 + PGA1_c05480 0.23 -0.0 560,012 - PGA1_c05480 0.28 +0.2 560,014 + PGA1_c05480 0.28 +1.6 560,014 + PGA1_c05480 0.28 +0.2 560,014 + PGA1_c05480 0.28 +0.5 560,017 - PGA1_c05480 0.29 +0.5 560,022 + PGA1_c05480 0.29 -1.7 560,022 - PGA1_c05480 0.29 -1.2 560,077 + PGA1_c05480 0.33 -1.9 560,170 + PGA1_c05480 0.39 -0.7 560,317 + PGA1_c05480 0.50 +0.4 560,317 + PGA1_c05480 0.50 -1.4 560,317 + PGA1_c05480 0.50 +0.4 560,317 + PGA1_c05480 0.50 +0.1 560,317 + PGA1_c05480 0.50 +1.3 560,317 + PGA1_c05480 0.50 -1.8 560,325 - PGA1_c05480 0.50 -1.5 560,325 - PGA1_c05480 0.50 +0.6 560,325 - PGA1_c05480 0.50 +2.4 560,327 + PGA1_c05480 0.51 -0.1 560,327 + PGA1_c05480 0.51 +0.3 560,327 + PGA1_c05480 0.51 +0.8 560,327 + PGA1_c05480 0.51 +0.2 560,327 + PGA1_c05480 0.51 -0.8 560,327 + PGA1_c05480 0.51 +0.8 560,335 - PGA1_c05480 0.51 -2.3 560,532 + PGA1_c05480 0.65 +0.0 560,596 - PGA1_c05480 0.70 +0.5 560,631 + PGA1_c05480 0.72 -3.0 560,631 + PGA1_c05480 0.72 -0.0 560,631 + PGA1_c05480 0.72 +0.4 560,639 - PGA1_c05480 0.73 -0.5 560,639 - PGA1_c05480 0.73 +0.1 560,639 - PGA1_c05480 0.73 -0.9 560,714 - PGA1_c05480 0.78 -1.1 560,757 - PGA1_c05480 0.81 +1.0 560,779 - PGA1_c05480 0.82 -1.4 560,786 + PGA1_c05480 0.83 -1.8 560,838 - PGA1_c05480 0.87 -0.3 560,923 + +1.0 560,923 + -0.2 560,923 + +0.6 560,923 + +0.7 560,923 + -0.6 560,931 - +0.3 560,931 - +1.3 560,931 - +0.2 561,023 - +3.1 561,025 + +0.9 561,028 - +1.4 561,038 + +0.5 561,046 - +1.4 561,106 - -0.4 561,107 + +1.1 561,168 + PGA1_c05490 0.20 -1.9 561,207 - PGA1_c05490 0.28 +0.1 561,237 + PGA1_c05490 0.34 +1.4 561,261 + PGA1_c05490 0.39 +0.8 561,284 - PGA1_c05490 0.44 -0.1 561,307 + PGA1_c05490 0.49 -0.6 561,334 - PGA1_c05490 0.54 +2.3 561,350 + PGA1_c05490 0.58 -0.7 561,355 + PGA1_c05490 0.59 -0.8 561,375 - PGA1_c05490 0.63 +0.3 561,416 + PGA1_c05490 0.71 -1.0 561,416 + PGA1_c05490 0.71 -0.3 561,434 + PGA1_c05490 0.75 -2.2 561,514 + +0.8 561,530 + +1.2 561,583 - -0.4 561,645 - +1.8 561,689 - +1.3 561,689 - +1.9 561,689 - -0.7 561,713 + +0.0 561,753 + +0.6 561,753 + +1.9 561,753 + +0.9 561,761 - +0.8 561,761 - +1.7 561,789 + -2.3 561,792 - +1.7 561,797 - +1.1 561,797 - +0.6 561,853 + PGA1_c05500 0.11 +1.2 561,853 + PGA1_c05500 0.11 -2.0 561,853 + PGA1_c05500 0.11 +1.6 561,853 + PGA1_c05500 0.11 +0.6 561,853 + PGA1_c05500 0.11 -1.7 561,861 - PGA1_c05500 0.12 -1.1 561,861 - PGA1_c05500 0.12 -2.1 561,914 - PGA1_c05500 0.16 -0.6 561,920 + PGA1_c05500 0.16 +0.5 561,976 + PGA1_c05500 0.20 +1.1 561,979 - PGA1_c05500 0.20 -2.9 561,984 - PGA1_c05500 0.21 +2.7
Or see this region's nucleotide sequence