Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05450 and PGA1_c05460 are separated by 197 nucleotides PGA1_c05460 and PGA1_c05470 are separated by 84 nucleotides PGA1_c05470 and PGA1_c05480 are separated by 154 nucleotides
PGA1_c05450: PGA1_c05450 - Predicted membrane protein, at 556,596 to 557,828
_c05450
PGA1_c05460: PGA1_c05460 - transcriptional regulator, LysR family, at 558,026 to 559,000
_c05460
PGA1_c05470: PGA1_c05470 - hydroxyisourate hydrolase, at 559,085 to 559,456
_c05470
PGA1_c05480: PGA1_c05480 - OHCU decarboxylase domain-containing protein, at 559,611 to 561,026
_c05480
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 557.078 kb on - strand, within PGA1_c05450 at 557.132 kb on + strand, within PGA1_c05450 at 557.255 kb on + strand, within PGA1_c05450 at 557.271 kb on - strand, within PGA1_c05450 at 557.285 kb on - strand, within PGA1_c05450 at 557.314 kb on + strand, within PGA1_c05450 at 557.340 kb on - strand, within PGA1_c05450 at 557.378 kb on - strand, within PGA1_c05450 at 557.396 kb on + strand, within PGA1_c05450 at 557.419 kb on - strand, within PGA1_c05450 at 557.457 kb on - strand, within PGA1_c05450 at 557.472 kb on - strand, within PGA1_c05450 at 557.485 kb on + strand, within PGA1_c05450 at 557.485 kb on + strand, within PGA1_c05450 at 557.485 kb on + strand, within PGA1_c05450 at 557.493 kb on - strand, within PGA1_c05450 at 557.493 kb on - strand, within PGA1_c05450 at 557.493 kb on - strand, within PGA1_c05450 at 557.493 kb on - strand, within PGA1_c05450 at 557.510 kb on + strand, within PGA1_c05450 at 557.515 kb on + strand, within PGA1_c05450 at 557.518 kb on - strand, within PGA1_c05450 at 557.518 kb on - strand, within PGA1_c05450 at 557.518 kb on - strand, within PGA1_c05450 at 557.523 kb on - strand, within PGA1_c05450 at 557.552 kb on - strand, within PGA1_c05450 at 557.558 kb on + strand, within PGA1_c05450 at 557.563 kb on - strand, within PGA1_c05450 at 557.597 kb on - strand, within PGA1_c05450 at 557.701 kb on + strand, within PGA1_c05450 at 557.811 kb on - strand at 557.862 kb on + strand at 557.877 kb on + strand at 557.917 kb on + strand at 557.982 kb on + strand at 557.988 kb on - strand at 558.023 kb on + strand at 558.024 kb on - strand at 558.044 kb on + strand at 558.051 kb on + strand at 558.059 kb on - strand at 558.071 kb on - strand at 558.101 kb on - strand at 558.123 kb on + strand at 558.257 kb on - strand, within PGA1_c05460 at 558.257 kb on - strand, within PGA1_c05460 at 558.273 kb on - strand, within PGA1_c05460 at 558.320 kb on + strand, within PGA1_c05460 at 558.320 kb on + strand, within PGA1_c05460 at 558.451 kb on - strand, within PGA1_c05460 at 558.520 kb on + strand, within PGA1_c05460 at 558.525 kb on - strand, within PGA1_c05460 at 558.587 kb on + strand, within PGA1_c05460 at 558.587 kb on + strand, within PGA1_c05460 at 558.595 kb on - strand, within PGA1_c05460 at 558.597 kb on + strand, within PGA1_c05460 at 558.597 kb on + strand, within PGA1_c05460 at 558.605 kb on - strand, within PGA1_c05460 at 558.605 kb on - strand, within PGA1_c05460 at 558.641 kb on + strand, within PGA1_c05460 at 558.641 kb on + strand, within PGA1_c05460 at 558.651 kb on + strand, within PGA1_c05460 at 558.654 kb on - strand, within PGA1_c05460 at 558.659 kb on - strand, within PGA1_c05460 at 558.659 kb on - strand, within PGA1_c05460 at 558.674 kb on - strand, within PGA1_c05460 at 558.731 kb on + strand, within PGA1_c05460 at 558.892 kb on + strand, within PGA1_c05460 at 558.900 kb on - strand, within PGA1_c05460 at 558.900 kb on - strand, within PGA1_c05460 at 558.952 kb on + strand at 558.974 kb on + strand at 559.003 kb on - strand at 559.392 kb on + strand, within PGA1_c05470 at 559.392 kb on + strand, within PGA1_c05470 at 559.412 kb on + strand, within PGA1_c05470 at 559.489 kb on - strand at 559.505 kb on + strand at 559.505 kb on + strand at 559.505 kb on + strand at 559.512 kb on + strand at 559.512 kb on + strand at 559.520 kb on - strand at 559.567 kb on - strand at 559.729 kb on + strand at 559.753 kb on + strand, within PGA1_c05480 at 559.775 kb on - strand, within PGA1_c05480 at 559.834 kb on - strand, within PGA1_c05480 at 559.874 kb on + strand, within PGA1_c05480 at 559.933 kb on + strand, within PGA1_c05480 at 559.933 kb on + strand, within PGA1_c05480
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 557,078 - PGA1_c05450 0.39 +1.1 557,132 + PGA1_c05450 0.43 +0.8 557,255 + PGA1_c05450 0.53 -0.4 557,271 - PGA1_c05450 0.55 -0.9 557,285 - PGA1_c05450 0.56 +0.8 557,314 + PGA1_c05450 0.58 +0.8 557,340 - PGA1_c05450 0.60 -2.5 557,378 - PGA1_c05450 0.63 +1.1 557,396 + PGA1_c05450 0.65 +1.1 557,419 - PGA1_c05450 0.67 +1.1 557,457 - PGA1_c05450 0.70 +0.9 557,472 - PGA1_c05450 0.71 +1.3 557,485 + PGA1_c05450 0.72 -0.3 557,485 + PGA1_c05450 0.72 -1.1 557,485 + PGA1_c05450 0.72 -1.4 557,493 - PGA1_c05450 0.73 +1.9 557,493 - PGA1_c05450 0.73 -0.9 557,493 - PGA1_c05450 0.73 +0.3 557,493 - PGA1_c05450 0.73 +1.3 557,510 + PGA1_c05450 0.74 -1.4 557,515 + PGA1_c05450 0.75 -0.2 557,518 - PGA1_c05450 0.75 +1.2 557,518 - PGA1_c05450 0.75 +0.7 557,518 - PGA1_c05450 0.75 -1.7 557,523 - PGA1_c05450 0.75 +0.3 557,552 - PGA1_c05450 0.78 -1.1 557,558 + PGA1_c05450 0.78 +0.1 557,563 - PGA1_c05450 0.78 +1.3 557,597 - PGA1_c05450 0.81 -0.6 557,701 + PGA1_c05450 0.90 -1.1 557,811 - +0.3 557,862 + +0.6 557,877 + +1.6 557,917 + -0.1 557,982 + -0.4 557,988 - -1.0 558,023 + -1.9 558,024 - -0.2 558,044 + +1.1 558,051 + +0.7 558,059 - +0.9 558,071 - -2.7 558,101 - -0.4 558,123 + +3.3 558,257 - PGA1_c05460 0.24 +2.0 558,257 - PGA1_c05460 0.24 +2.7 558,273 - PGA1_c05460 0.25 -0.7 558,320 + PGA1_c05460 0.30 +0.2 558,320 + PGA1_c05460 0.30 +1.8 558,451 - PGA1_c05460 0.44 +1.8 558,520 + PGA1_c05460 0.51 -0.3 558,525 - PGA1_c05460 0.51 +0.4 558,587 + PGA1_c05460 0.58 -1.2 558,587 + PGA1_c05460 0.58 -0.5 558,595 - PGA1_c05460 0.58 -0.4 558,597 + PGA1_c05460 0.59 +1.2 558,597 + PGA1_c05460 0.59 +1.4 558,605 - PGA1_c05460 0.59 +0.9 558,605 - PGA1_c05460 0.59 +1.5 558,641 + PGA1_c05460 0.63 +0.9 558,641 + PGA1_c05460 0.63 +0.3 558,651 + PGA1_c05460 0.64 +0.3 558,654 - PGA1_c05460 0.64 +1.3 558,659 - PGA1_c05460 0.65 +1.2 558,659 - PGA1_c05460 0.65 +2.2 558,674 - PGA1_c05460 0.66 +0.8 558,731 + PGA1_c05460 0.72 +0.1 558,892 + PGA1_c05460 0.89 +0.3 558,900 - PGA1_c05460 0.90 +0.1 558,900 - PGA1_c05460 0.90 +0.8 558,952 + +0.9 558,974 + -0.4 559,003 - -0.3 559,392 + PGA1_c05470 0.83 -2.7 559,392 + PGA1_c05470 0.83 -0.6 559,412 + PGA1_c05470 0.88 -0.9 559,489 - -1.3 559,505 + +0.9 559,505 + +1.4 559,505 + +1.3 559,512 + -0.1 559,512 + +0.3 559,520 - +0.3 559,567 - +0.6 559,729 + +0.6 559,753 + PGA1_c05480 0.10 +1.3 559,775 - PGA1_c05480 0.12 -0.1 559,834 - PGA1_c05480 0.16 +1.0 559,874 + PGA1_c05480 0.19 -0.1 559,933 + PGA1_c05480 0.23 -0.9 559,933 + PGA1_c05480 0.23 -0.0
Or see this region's nucleotide sequence