Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00490 and PGA1_c00500 are separated by 219 nucleotides PGA1_c00500 and PGA1_c00510 are separated by 11 nucleotides PGA1_c00510 and PGA1_c00520 are separated by 302 nucleotides
PGA1_c00490: PGA1_c00490 - ATPases involved in chromosome partitioning, at 54,158 to 54,967
_c00490
PGA1_c00500: PGA1_c00500 - 50S ribosomal protein L31, at 55,187 to 55,408
_c00500
PGA1_c00510: PGA1_c00510 - 50S ribosomal protein L19, at 55,420 to 55,791
_c00510
PGA1_c00520: PGA1_c00520 - tRNA (guanine-N(1)-)-methyltransferase TrmD, at 56,094 to 56,894
_c00520
Position (kb) 55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 54.211 kb on + strand at 54.211 kb on + strand at 54.220 kb on - strand at 54.237 kb on + strand at 54.285 kb on - strand, within PGA1_c00490 at 54.296 kb on - strand, within PGA1_c00490 at 54.361 kb on + strand, within PGA1_c00490 at 54.480 kb on + strand, within PGA1_c00490 at 54.652 kb on - strand, within PGA1_c00490 at 54.724 kb on + strand, within PGA1_c00490 at 54.724 kb on + strand, within PGA1_c00490 at 54.732 kb on - strand, within PGA1_c00490 at 54.776 kb on - strand, within PGA1_c00490 at 54.779 kb on + strand, within PGA1_c00490 at 54.855 kb on - strand, within PGA1_c00490 at 54.913 kb on + strand at 54.984 kb on - strand at 54.986 kb on - strand at 54.986 kb on - strand at 54.995 kb on + strand at 55.077 kb on - strand at 55.087 kb on - strand at 56.042 kb on + strand at 56.047 kb on + strand at 56.067 kb on - strand at 56.120 kb on - strand at 56.120 kb on - strand at 56.123 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 54,211 + -1.6 54,211 + -1.7 54,220 - +3.2 54,237 + -0.5 54,285 - PGA1_c00490 0.16 -2.3 54,296 - PGA1_c00490 0.17 -0.3 54,361 + PGA1_c00490 0.25 -2.1 54,480 + PGA1_c00490 0.40 +2.1 54,652 - PGA1_c00490 0.61 -1.5 54,724 + PGA1_c00490 0.70 -1.2 54,724 + PGA1_c00490 0.70 -0.8 54,732 - PGA1_c00490 0.71 -0.7 54,776 - PGA1_c00490 0.76 -1.8 54,779 + PGA1_c00490 0.77 -1.2 54,855 - PGA1_c00490 0.86 -0.8 54,913 + -0.9 54,984 - -1.6 54,986 - +0.3 54,986 - +0.9 54,995 + -2.8 55,077 - -0.5 55,087 - +2.1 56,042 + +0.5 56,047 + -0.2 56,067 - +0.4 56,120 - -2.0 56,120 - +2.6 56,123 - -1.0
Or see this region's nucleotide sequence