Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00290

Experiment: Glycine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00280 and PGA1_78p00290 are separated by 78 nucleotidesPGA1_78p00290 and PGA1_78p00300 are separated by 18 nucleotidesPGA1_78p00300 and PGA1_78p00310 are separated by 100 nucleotides PGA1_78p00280: PGA1_78p00280 - putative sodium/alanine symporter, at 33,691 to 35,067 _78p00280 PGA1_78p00290: PGA1_78p00290 - aminomethyltransferase GcvT, at 35,146 to 36,243 _78p00290 PGA1_78p00300: PGA1_78p00300 - glycine cleavage system protein GcvH, at 36,262 to 36,627 _78p00300 PGA1_78p00310: PGA1_78p00310 - glycine dehydrogenase, at 36,728 to 39,583 _78p00310 Position (kb) 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1at 34.150 kb on + strand, within PGA1_78p00280at 34.197 kb on + strand, within PGA1_78p00280at 34.205 kb on + strand, within PGA1_78p00280at 34.205 kb on - strand, within PGA1_78p00280at 34.409 kb on - strand, within PGA1_78p00280at 34.807 kb on - strand, within PGA1_78p00280at 36.613 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (C)
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34,150 + PGA1_78p00280 0.33 +0.2
34,197 + PGA1_78p00280 0.37 -3.2
34,205 + PGA1_78p00280 0.37 +0.2
34,205 - PGA1_78p00280 0.37 +0.5
34,409 - PGA1_78p00280 0.52 -2.8
34,807 - PGA1_78p00280 0.81 -2.8
36,613 - +0.3

Or see this region's nucleotide sequence