Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00240 and PGA1_78p00250 are separated by 92 nucleotides PGA1_78p00250 and PGA1_78p00260 are separated by 165 nucleotides PGA1_78p00260 and PGA1_78p00270 are separated by 36 nucleotides
PGA1_78p00240: PGA1_78p00240 - Uncharacterized protein conserved in bacteria, at 27,819 to 30,284
_78p00240
PGA1_78p00250: PGA1_78p00250 - putative HTH-type transcriptional regulator, at 30,377 to 30,988
_78p00250
PGA1_78p00260: PGA1_78p00260 - dihydrolipoyl dehydrogenase LpdA, at 31,154 to 32,536
_78p00260
PGA1_78p00270: PGA1_78p00270 - lipoyl synthase LipA, at 32,573 to 33,541
_78p00270
Position (kb) 31
32
33 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 30.437 kb on + strand at 30.644 kb on - strand, within PGA1_78p00250 at 30.644 kb on - strand, within PGA1_78p00250 at 30.689 kb on - strand, within PGA1_78p00250 at 30.919 kb on + strand, within PGA1_78p00250 at 31.115 kb on + strand at 31.315 kb on + strand, within PGA1_78p00260 at 31.644 kb on + strand, within PGA1_78p00260 at 32.242 kb on - strand, within PGA1_78p00260 at 32.564 kb on - strand at 33.155 kb on + strand, within PGA1_78p00270 at 33.351 kb on - strand, within PGA1_78p00270 at 33.366 kb on + strand, within PGA1_78p00270 at 33.374 kb on - strand, within PGA1_78p00270 at 33.434 kb on + strand, within PGA1_78p00270 at 33.434 kb on + strand, within PGA1_78p00270 at 33.442 kb on - strand, within PGA1_78p00270 at 33.511 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 30,437 + -1.4 30,644 - PGA1_78p00250 0.44 -0.1 30,644 - PGA1_78p00250 0.44 +0.2 30,689 - PGA1_78p00250 0.51 +2.0 30,919 + PGA1_78p00250 0.89 +1.7 31,115 + -2.3 31,315 + PGA1_78p00260 0.12 -1.5 31,644 + PGA1_78p00260 0.35 -3.0 32,242 - PGA1_78p00260 0.79 -2.5 32,564 - -1.8 33,155 + PGA1_78p00270 0.60 +0.2 33,351 - PGA1_78p00270 0.80 -1.0 33,366 + PGA1_78p00270 0.82 -2.1 33,374 - PGA1_78p00270 0.83 -2.1 33,434 + PGA1_78p00270 0.89 -1.5 33,434 + PGA1_78p00270 0.89 -1.9 33,442 - PGA1_78p00270 0.90 -1.8 33,511 + -1.0
Or see this region's nucleotide sequence