Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00560 and PGA1_262p00570 are separated by 27 nucleotides PGA1_262p00570 and PGA1_262p00580 are separated by 26 nucleotides PGA1_262p00580 and PGA1_262p00590 are separated by 34 nucleotides PGA1_262p00590 and PGA1_262p00600 overlap by 4 nucleotides
PGA1_262p00560: PGA1_262p00560 - uracil DNA glycosylase-like protein, at 65,033 to 66,478
_262p00560
PGA1_262p00570: PGA1_262p00570 - hypothetical protein, at 66,506 to 66,763
_262p00570
PGA1_262p00580: PGA1_262p00580 - putative polysaccharide biosynthesis/export protein, at 66,790 to 68,163
_262p00580
PGA1_262p00590: PGA1_262p00590 - Protein of unknown function (DUF2886)., at 68,198 to 68,857
_262p00590
PGA1_262p00600: PGA1_262p00600 - Bacterial putative lipoprotein (DUF940)., at 68,854 to 70,983
_262p00600
Position (kb) 66
67
68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 66.019 kb on - strand, within PGA1_262p00560 at 66.035 kb on - strand, within PGA1_262p00560 at 66.311 kb on + strand, within PGA1_262p00560 at 66.365 kb on - strand at 66.532 kb on + strand, within PGA1_262p00570 at 66.540 kb on - strand, within PGA1_262p00570 at 66.540 kb on - strand, within PGA1_262p00570 at 66.542 kb on + strand, within PGA1_262p00570 at 66.542 kb on + strand, within PGA1_262p00570 at 66.661 kb on + strand, within PGA1_262p00570 at 66.692 kb on - strand, within PGA1_262p00570 at 66.751 kb on + strand at 66.754 kb on - strand at 66.761 kb on + strand at 66.844 kb on - strand at 66.924 kb on + strand at 66.932 kb on - strand, within PGA1_262p00580 at 66.932 kb on - strand, within PGA1_262p00580 at 67.007 kb on + strand, within PGA1_262p00580 at 67.007 kb on + strand, within PGA1_262p00580 at 67.055 kb on + strand, within PGA1_262p00580 at 67.063 kb on - strand, within PGA1_262p00580 at 67.135 kb on + strand, within PGA1_262p00580 at 67.137 kb on + strand, within PGA1_262p00580 at 67.197 kb on + strand, within PGA1_262p00580 at 67.205 kb on - strand, within PGA1_262p00580 at 67.234 kb on + strand, within PGA1_262p00580 at 67.240 kb on - strand, within PGA1_262p00580 at 67.368 kb on - strand, within PGA1_262p00580 at 67.368 kb on - strand, within PGA1_262p00580 at 67.738 kb on - strand, within PGA1_262p00580 at 67.875 kb on - strand, within PGA1_262p00580 at 67.875 kb on - strand, within PGA1_262p00580 at 67.875 kb on - strand, within PGA1_262p00580 at 68.008 kb on - strand, within PGA1_262p00580 at 68.008 kb on - strand, within PGA1_262p00580 at 68.101 kb on - strand at 68.197 kb on + strand at 68.208 kb on + strand at 68.322 kb on - strand, within PGA1_262p00590 at 68.423 kb on - strand, within PGA1_262p00590 at 68.643 kb on - strand, within PGA1_262p00590 at 68.709 kb on - strand, within PGA1_262p00590 at 68.742 kb on - strand, within PGA1_262p00590 at 68.771 kb on + strand, within PGA1_262p00590 at 68.798 kb on - strand at 68.850 kb on + strand at 68.892 kb on + strand at 68.956 kb on + strand at 68.982 kb on - strand at 69.035 kb on + strand at 69.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 66,019 - PGA1_262p00560 0.68 -1.2 66,035 - PGA1_262p00560 0.69 -1.2 66,311 + PGA1_262p00560 0.88 -0.8 66,365 - -2.8 66,532 + PGA1_262p00570 0.10 -0.8 66,540 - PGA1_262p00570 0.13 -0.4 66,540 - PGA1_262p00570 0.13 +0.9 66,542 + PGA1_262p00570 0.14 +1.2 66,542 + PGA1_262p00570 0.14 +0.3 66,661 + PGA1_262p00570 0.60 +1.4 66,692 - PGA1_262p00570 0.72 -0.5 66,751 + -0.3 66,754 - +0.8 66,761 + -2.0 66,844 - +0.1 66,924 + -0.7 66,932 - PGA1_262p00580 0.10 +0.7 66,932 - PGA1_262p00580 0.10 -3.0 67,007 + PGA1_262p00580 0.16 +1.5 67,007 + PGA1_262p00580 0.16 +0.8 67,055 + PGA1_262p00580 0.19 -0.9 67,063 - PGA1_262p00580 0.20 -0.8 67,135 + PGA1_262p00580 0.25 -1.5 67,137 + PGA1_262p00580 0.25 +0.7 67,197 + PGA1_262p00580 0.30 +0.8 67,205 - PGA1_262p00580 0.30 -0.5 67,234 + PGA1_262p00580 0.32 -0.9 67,240 - PGA1_262p00580 0.33 -1.3 67,368 - PGA1_262p00580 0.42 -0.7 67,368 - PGA1_262p00580 0.42 -2.7 67,738 - PGA1_262p00580 0.69 +1.3 67,875 - PGA1_262p00580 0.79 -1.1 67,875 - PGA1_262p00580 0.79 -2.3 67,875 - PGA1_262p00580 0.79 -2.8 68,008 - PGA1_262p00580 0.89 -0.8 68,008 - PGA1_262p00580 0.89 -0.5 68,101 - -0.6 68,197 + -1.8 68,208 + -0.2 68,322 - PGA1_262p00590 0.19 +0.7 68,423 - PGA1_262p00590 0.34 -0.0 68,643 - PGA1_262p00590 0.67 -0.5 68,709 - PGA1_262p00590 0.77 +0.3 68,742 - PGA1_262p00590 0.82 -0.9 68,771 + PGA1_262p00590 0.87 +0.8 68,798 - -0.1 68,850 + +2.2 68,892 + +1.5 68,956 + -0.8 68,982 - +0.6 69,035 + -0.9 69,043 - -0.2
Or see this region's nucleotide sequence