Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31970

Experiment: Glycine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c31960 and PGA1_c31970 are separated by 329 nucleotidesPGA1_c31970 and PGA1_c31980 are separated by 66 nucleotidesPGA1_c31980 and PGA1_c31990 are separated by 121 nucleotides PGA1_c31960: PGA1_c31960 - conserved hypothetical integral membrane protein, at 3,350,868 to 3,351,500 _c31960 PGA1_c31970: PGA1_c31970 - peptidyl-tRNA hydrolase-like protein, at 3,351,830 to 3,352,249 _c31970 PGA1_c31980: PGA1_c31980 - short chain dehydrogenase, at 3,352,316 to 3,353,077 _c31980 PGA1_c31990: PGA1_c31990 - peptidase, family S58, at 3,353,199 to 3,354,236 _c31990 Position (kb) 3351 3352 3353Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3350.835 kb on - strandat 3350.908 kb on + strandat 3350.927 kb on - strandat 3350.971 kb on + strand, within PGA1_c31960at 3350.978 kb on - strand, within PGA1_c31960at 3350.988 kb on - strand, within PGA1_c31960at 3350.989 kb on - strand, within PGA1_c31960at 3350.994 kb on + strand, within PGA1_c31960at 3351.030 kb on + strand, within PGA1_c31960at 3351.033 kb on - strand, within PGA1_c31960at 3351.051 kb on - strand, within PGA1_c31960at 3351.106 kb on - strand, within PGA1_c31960at 3351.150 kb on + strand, within PGA1_c31960at 3351.150 kb on + strand, within PGA1_c31960at 3351.158 kb on - strand, within PGA1_c31960at 3351.158 kb on - strand, within PGA1_c31960at 3351.191 kb on - strand, within PGA1_c31960at 3351.203 kb on + strand, within PGA1_c31960at 3351.206 kb on - strand, within PGA1_c31960at 3351.211 kb on - strand, within PGA1_c31960at 3351.228 kb on + strand, within PGA1_c31960at 3351.233 kb on + strand, within PGA1_c31960at 3351.243 kb on - strand, within PGA1_c31960at 3351.267 kb on + strand, within PGA1_c31960at 3351.267 kb on + strand, within PGA1_c31960at 3351.272 kb on + strand, within PGA1_c31960at 3351.280 kb on - strand, within PGA1_c31960at 3351.297 kb on + strand, within PGA1_c31960at 3351.305 kb on - strand, within PGA1_c31960at 3351.307 kb on + strand, within PGA1_c31960at 3351.307 kb on + strand, within PGA1_c31960at 3351.307 kb on + strand, within PGA1_c31960at 3351.307 kb on + strand, within PGA1_c31960at 3351.310 kb on - strand, within PGA1_c31960at 3351.310 kb on - strand, within PGA1_c31960at 3351.380 kb on + strand, within PGA1_c31960at 3351.385 kb on + strand, within PGA1_c31960at 3351.459 kb on + strandat 3351.476 kb on - strandat 3351.476 kb on - strandat 3351.479 kb on + strandat 3351.480 kb on + strandat 3351.488 kb on - strandat 3351.553 kb on - strandat 3351.553 kb on - strandat 3351.579 kb on + strandat 3351.593 kb on - strandat 3351.596 kb on + strandat 3351.610 kb on - strandat 3351.687 kb on + strandat 3351.762 kb on + strandat 3351.767 kb on + strandat 3351.769 kb on + strandat 3351.769 kb on + strandat 3351.775 kb on - strandat 3351.777 kb on - strandat 3351.777 kb on - strandat 3351.787 kb on - strandat 3351.819 kb on - strandat 3351.842 kb on + strandat 3351.902 kb on - strand, within PGA1_c31970at 3351.911 kb on - strand, within PGA1_c31970at 3351.936 kb on - strand, within PGA1_c31970at 3351.949 kb on + strand, within PGA1_c31970at 3351.957 kb on - strand, within PGA1_c31970at 3351.957 kb on - strand, within PGA1_c31970at 3351.966 kb on + strand, within PGA1_c31970at 3351.974 kb on - strand, within PGA1_c31970at 3351.986 kb on - strand, within PGA1_c31970at 3352.100 kb on + strand, within PGA1_c31970at 3352.131 kb on - strand, within PGA1_c31970at 3352.160 kb on + strand, within PGA1_c31970at 3352.244 kb on + strandat 3352.244 kb on + strandat 3352.244 kb on + strandat 3352.244 kb on + strandat 3352.244 kb on + strandat 3352.252 kb on - strandat 3352.261 kb on + strandat 3352.276 kb on - strandat 3352.304 kb on - strandat 3352.305 kb on + strandat 3352.318 kb on - strandat 3352.538 kb on + strand, within PGA1_c31980at 3352.557 kb on + strand, within PGA1_c31980at 3352.575 kb on - strand, within PGA1_c31980at 3352.595 kb on - strand, within PGA1_c31980at 3352.630 kb on - strand, within PGA1_c31980at 3352.637 kb on + strand, within PGA1_c31980at 3352.686 kb on + strand, within PGA1_c31980at 3352.720 kb on + strand, within PGA1_c31980at 3352.732 kb on + strand, within PGA1_c31980at 3352.749 kb on - strand, within PGA1_c31980at 3352.774 kb on + strand, within PGA1_c31980at 3352.822 kb on + strand, within PGA1_c31980at 3352.845 kb on + strand, within PGA1_c31980at 3352.853 kb on - strand, within PGA1_c31980at 3352.853 kb on - strand, within PGA1_c31980at 3352.913 kb on + strand, within PGA1_c31980at 3352.918 kb on + strand, within PGA1_c31980at 3352.921 kb on - strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.923 kb on + strand, within PGA1_c31980at 3352.931 kb on - strand, within PGA1_c31980at 3352.931 kb on - strand, within PGA1_c31980at 3352.931 kb on - strand, within PGA1_c31980at 3352.931 kb on - strand, within PGA1_c31980at 3352.931 kb on - strand, within PGA1_c31980at 3352.931 kb on - strand, within PGA1_c31980at 3352.931 kb on - strand, within PGA1_c31980at 3352.931 kb on - strand, within PGA1_c31980at 3352.931 kb on - strand, within PGA1_c31980at 3352.931 kb on - strand, within PGA1_c31980at 3352.931 kb on - strand, within PGA1_c31980at 3352.965 kb on - strand, within PGA1_c31980at 3353.013 kb on + strandat 3353.088 kb on - strandat 3353.128 kb on + strandat 3353.139 kb on + strandat 3353.165 kb on + strandat 3353.227 kb on + strandat 3353.239 kb on + strandat 3353.247 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (C)
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3,350,835 - +0.1
3,350,908 + -1.8
3,350,927 - +0.6
3,350,971 + PGA1_c31960 0.16 +1.4
3,350,978 - PGA1_c31960 0.17 -1.9
3,350,988 - PGA1_c31960 0.19 -2.3
3,350,989 - PGA1_c31960 0.19 -2.3
3,350,994 + PGA1_c31960 0.20 -0.5
3,351,030 + PGA1_c31960 0.26 -1.0
3,351,033 - PGA1_c31960 0.26 +2.5
3,351,051 - PGA1_c31960 0.29 -0.9
3,351,106 - PGA1_c31960 0.38 -0.2
3,351,150 + PGA1_c31960 0.45 -1.7
3,351,150 + PGA1_c31960 0.45 -1.6
3,351,158 - PGA1_c31960 0.46 -1.0
3,351,158 - PGA1_c31960 0.46 -0.6
3,351,191 - PGA1_c31960 0.51 +2.1
3,351,203 + PGA1_c31960 0.53 +1.9
3,351,206 - PGA1_c31960 0.53 +2.6
3,351,211 - PGA1_c31960 0.54 -1.4
3,351,228 + PGA1_c31960 0.57 +1.4
3,351,233 + PGA1_c31960 0.58 -1.3
3,351,243 - PGA1_c31960 0.59 -2.3
3,351,267 + PGA1_c31960 0.63 -0.9
3,351,267 + PGA1_c31960 0.63 +0.4
3,351,272 + PGA1_c31960 0.64 -0.8
3,351,280 - PGA1_c31960 0.65 +1.1
3,351,297 + PGA1_c31960 0.68 +1.6
3,351,305 - PGA1_c31960 0.69 -1.9
3,351,307 + PGA1_c31960 0.69 +0.1
3,351,307 + PGA1_c31960 0.69 -2.6
3,351,307 + PGA1_c31960 0.69 -1.6
3,351,307 + PGA1_c31960 0.69 -0.2
3,351,310 - PGA1_c31960 0.70 -1.5
3,351,310 - PGA1_c31960 0.70 +1.2
3,351,380 + PGA1_c31960 0.81 +0.9
3,351,385 + PGA1_c31960 0.82 +0.1
3,351,459 + -0.3
3,351,476 - +1.1
3,351,476 - +0.7
3,351,479 + -2.5
3,351,480 + -0.5
3,351,488 - +1.9
3,351,553 - -0.5
3,351,553 - +0.8
3,351,579 + -1.7
3,351,593 - +0.1
3,351,596 + -2.2
3,351,610 - -0.4
3,351,687 + +0.8
3,351,762 + +0.4
3,351,767 + +0.5
3,351,769 + -1.3
3,351,769 + -1.5
3,351,775 - +0.1
3,351,777 - +0.2
3,351,777 - -0.3
3,351,787 - +0.8
3,351,819 - +0.1
3,351,842 + +1.0
3,351,902 - PGA1_c31970 0.17 -2.5
3,351,911 - PGA1_c31970 0.19 -1.1
3,351,936 - PGA1_c31970 0.25 -0.7
3,351,949 + PGA1_c31970 0.28 -0.1
3,351,957 - PGA1_c31970 0.30 +0.1
3,351,957 - PGA1_c31970 0.30 -1.6
3,351,966 + PGA1_c31970 0.32 -1.9
3,351,974 - PGA1_c31970 0.34 +0.9
3,351,986 - PGA1_c31970 0.37 -1.1
3,352,100 + PGA1_c31970 0.64 -2.1
3,352,131 - PGA1_c31970 0.72 -1.1
3,352,160 + PGA1_c31970 0.79 -0.9
3,352,244 + -0.0
3,352,244 + -1.0
3,352,244 + -1.5
3,352,244 + -1.6
3,352,244 + +0.9
3,352,252 - +0.1
3,352,261 + -2.3
3,352,276 - -1.6
3,352,304 - -1.7
3,352,305 + -0.7
3,352,318 - +1.3
3,352,538 + PGA1_c31980 0.29 +1.1
3,352,557 + PGA1_c31980 0.32 -0.3
3,352,575 - PGA1_c31980 0.34 -0.8
3,352,595 - PGA1_c31980 0.37 -0.5
3,352,630 - PGA1_c31980 0.41 +0.5
3,352,637 + PGA1_c31980 0.42 +1.5
3,352,686 + PGA1_c31980 0.49 +0.4
3,352,720 + PGA1_c31980 0.53 +0.9
3,352,732 + PGA1_c31980 0.55 -1.0
3,352,749 - PGA1_c31980 0.57 +0.3
3,352,774 + PGA1_c31980 0.60 +0.7
3,352,822 + PGA1_c31980 0.66 -1.1
3,352,845 + PGA1_c31980 0.69 +0.9
3,352,853 - PGA1_c31980 0.70 -1.3
3,352,853 - PGA1_c31980 0.70 +0.6
3,352,913 + PGA1_c31980 0.78 -1.1
3,352,918 + PGA1_c31980 0.79 +1.4
3,352,921 - PGA1_c31980 0.79 +2.0
3,352,923 + PGA1_c31980 0.80 -0.7
3,352,923 + PGA1_c31980 0.80 -3.1
3,352,923 + PGA1_c31980 0.80 -2.4
3,352,923 + PGA1_c31980 0.80 +0.6
3,352,923 + PGA1_c31980 0.80 -0.3
3,352,923 + PGA1_c31980 0.80 -1.4
3,352,923 + PGA1_c31980 0.80 +0.2
3,352,923 + PGA1_c31980 0.80 +1.3
3,352,923 + PGA1_c31980 0.80 -1.7
3,352,923 + PGA1_c31980 0.80 +1.0
3,352,923 + PGA1_c31980 0.80 -1.5
3,352,923 + PGA1_c31980 0.80 +1.0
3,352,923 + PGA1_c31980 0.80 -0.6
3,352,923 + PGA1_c31980 0.80 -3.1
3,352,923 + PGA1_c31980 0.80 +0.4
3,352,923 + PGA1_c31980 0.80 -1.5
3,352,923 + PGA1_c31980 0.80 +0.8
3,352,923 + PGA1_c31980 0.80 +0.4
3,352,923 + PGA1_c31980 0.80 -1.1
3,352,923 + PGA1_c31980 0.80 -0.1
3,352,931 - PGA1_c31980 0.81 -0.9
3,352,931 - PGA1_c31980 0.81 -1.8
3,352,931 - PGA1_c31980 0.81 -0.5
3,352,931 - PGA1_c31980 0.81 -0.1
3,352,931 - PGA1_c31980 0.81 +1.2
3,352,931 - PGA1_c31980 0.81 -0.8
3,352,931 - PGA1_c31980 0.81 +2.1
3,352,931 - PGA1_c31980 0.81 -0.1
3,352,931 - PGA1_c31980 0.81 -1.0
3,352,931 - PGA1_c31980 0.81 -1.4
3,352,931 - PGA1_c31980 0.81 +1.0
3,352,965 - PGA1_c31980 0.85 -2.2
3,353,013 + +0.4
3,353,088 - -2.5
3,353,128 + +2.1
3,353,139 + -0.6
3,353,165 + +0.3
3,353,227 + +0.4
3,353,239 + -1.9
3,353,247 - -3.4

Or see this region's nucleotide sequence