Strain Fitness in Shewanella amazonensis SB2B around Sama_3145

Experiment: sodium fluoride 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 25 mM
3,730,796	-		Sama_3143	0.20	+0.0
3,730,796	-		Sama_3143	0.20	-0.9
3,730,796	-		Sama_3143	0.20	-0.7
3,730,796	-		Sama_3143	0.20	-0.1
3,730,829	+		Sama_3143	0.32	+1.3
3,730,829	+		Sama_3143	0.32	-1.1
3,730,830	-		Sama_3143	0.32	-0.6
3,730,830	-		Sama_3143	0.32	-0.6
3,730,830	-		Sama_3143	0.32	+0.5
3,730,901	-		Sama_3143	0.56	+0.8
3,730,901	-		Sama_3143	0.56	+1.0
3,730,911	+		Sama_3143	0.60	+1.0
3,730,911	+		Sama_3143	0.60	+1.1
3,730,911	+		Sama_3143	0.60	-1.3
3,730,912	-		Sama_3143	0.60	-0.5
3,730,973	+		Sama_3143	0.81	+0.3
3,730,973	+		Sama_3143	0.81	+0.6
3,730,988	+		Sama_3143	0.86	-1.2
3,730,989	-		Sama_3143	0.86	-0.3
3,730,996	+		Sama_3143	0.88	+0.1
3,730,996	+		Sama_3143	0.88	+0.4
3,731,036	+				+1.0
3,731,067	+				-0.3
3,731,082	-				+0.7
3,731,082	-				-0.1
3,731,114	-				+0.3
3,731,124	-				+1.0
3,731,124	-				-0.6
3,731,124	-				+0.7
3,731,154	+				-0.8
3,731,179	+				-0.2
3,731,179	+				+0.5
3,731,179	+				+0.0
3,731,179	+				+0.1
3,731,179	+				+0.5
3,731,179	+				+0.2
3,731,180	-				-0.3
3,731,180	-				+1.8
3,731,180	-				-1.2
3,731,180	-				+0.9
3,731,180	-				-1.7
3,731,180	-				-1.3
3,731,180	-				+0.9
3,731,180	-				+0.1
3,731,180	-				-0.6
3,731,180	-				+0.4
3,731,202	-				-0.8
3,731,213	+				-1.2
3,731,213	+				-1.5
3,731,214	-				-0.4
3,731,214	-				+0.0
3,731,214	-				-0.0
3,731,214	-				+0.2
3,731,214	-				-2.0
3,731,298	-				+1.0
3,731,355	+				+0.5
3,731,355	+				-0.2
3,731,356	-				-0.4
3,731,356	-				+0.5
3,731,362	-				+0.0
3,731,413	+		Sama_3144	0.18	-0.5
3,731,414	-		Sama_3144	0.18	+1.1
3,731,435	+		Sama_3144	0.25	-0.5
3,731,435	+		Sama_3144	0.25	+1.3
3,731,436	-		Sama_3144	0.25	+1.0
3,731,532	+		Sama_3144	0.54	-0.4
3,731,533	-		Sama_3144	0.54	+1.2
3,731,543	+		Sama_3144	0.57	-0.2
3,731,543	+		Sama_3144	0.57	+0.2
3,731,639	+		Sama_3144	0.86	+1.4
3,731,675	-				+0.4
3,731,675	-				+0.3
3,731,686	+				-0.6
3,731,686	+				+2.0
3,731,686	+				-0.9
3,731,686	+				-1.4
3,731,686	+				+0.8
3,731,686	+				-0.4
3,731,686	+				+0.5
3,731,687	-				+0.4
3,731,687	-				-1.2
3,731,687	-				+0.0
3,731,687	-				+0.6
3,731,687	-				-0.3
3,731,717	+				+1.1
3,731,717	+				+0.6
3,731,717	+				-0.1
3,731,717	+				+1.3
3,731,718	-				-0.8
3,731,718	-				-1.0
3,731,771	+				-0.3
3,731,771	+				-0.9
3,731,771	+				-0.4
3,731,792	+				+0.6
3,731,792	+				+0.8
3,731,793	-				-1.0
3,731,793	-				+1.0
3,731,793	-				+1.1
3,731,793	-				+0.5
3,731,793	-				-1.4
3,731,801	+				-1.2
3,731,801	+				-0.6
3,731,801	+				+0.2
3,731,801	+				-1.1
3,731,801	+				-0.1
3,731,801	+				-1.1
3,731,801	+				-1.4
3,731,801	+				+0.1
3,731,801	+				+1.5
3,731,801	+				-1.1
3,731,801	+				+0.9
3,731,801	+				+0.4
3,731,802	-				-0.4
3,731,802	-				-0.3
3,731,802	-				+0.7
3,731,802	-				-0.8
3,731,802	-				-0.2
3,731,802	-				-0.5
3,731,802	-				+0.6
3,731,802	-				-2.7
3,731,802	-				-0.1
3,731,802	-				+0.5
3,731,802	-				-0.6
3,731,808	+				+1.0
3,731,809	-				-0.8
3,731,809	-				-0.2
3,731,809	-				-1.7
3,731,828	+				-0.2
3,731,828	+				+0.4
3,731,829	-				-0.8
3,731,839	+				-0.4
3,731,839	+				+0.8
3,731,839	+				-0.2
3,731,840	-				-0.4
3,731,840	-				-0.4
3,731,913	-				-0.7
3,731,913	-				+0.2
3,731,938	+				-0.2
3,731,938	+				+1.2
3,731,938	+				-0.6
3,731,938	+				+0.9
3,731,939	-				+0.2
3,731,939	-				-0.2
3,731,998	-		Sama_3145	0.12	-0.4
3,732,005	-		Sama_3145	0.13	-0.8
3,732,035	+		Sama_3145	0.15	-0.7
3,732,035	+		Sama_3145	0.15	+0.6
3,732,035	+		Sama_3145	0.15	-1.3
3,732,035	+		Sama_3145	0.15	-0.3
3,732,035	+		Sama_3145	0.15	+0.0
3,732,036	-		Sama_3145	0.15	-0.5
3,732,076	-		Sama_3145	0.17	-0.8
3,732,076	-		Sama_3145	0.17	-0.6
3,732,110	+		Sama_3145	0.19	-0.2
3,732,129	+		Sama_3145	0.20	-0.2
3,732,129	+		Sama_3145	0.20	+1.4
3,732,130	-		Sama_3145	0.20	-0.3
3,732,190	+		Sama_3145	0.24	+0.1
3,732,190	+		Sama_3145	0.24	-0.5
3,732,190	+		Sama_3145	0.24	-0.6
3,732,190	+		Sama_3145	0.24	-0.1
3,732,191	-		Sama_3145	0.24	+0.8
3,732,357	+		Sama_3145	0.34	-2.9
3,732,357	+		Sama_3145	0.34	+0.3
3,732,357	+		Sama_3145	0.34	+1.8
3,732,358	-		Sama_3145	0.34	-0.4
3,732,522	-		Sama_3145	0.44	-0.8
3,732,563	+		Sama_3145	0.47	-0.9
3,732,563	+		Sama_3145	0.47	+0.4
3,732,563	+		Sama_3145	0.47	+4.0
3,732,563	+		Sama_3145	0.47	+0.4
3,732,563	+		Sama_3145	0.47	+1.2
3,732,566	+		Sama_3145	0.47	+0.8
3,732,566	+		Sama_3145	0.47	+0.6
3,732,567	-		Sama_3145	0.47	+0.3
3,732,567	-		Sama_3145	0.47	+1.0
3,732,567	-		Sama_3145	0.47	+0.8
3,732,643	+		Sama_3145	0.52	-0.6
3,732,644	-		Sama_3145	0.52	-0.6
3,732,668	+		Sama_3145	0.53	+0.0
3,732,677	+		Sama_3145	0.54	+0.7
3,732,677	+		Sama_3145	0.54	+0.1
3,732,677	+		Sama_3145	0.54	-1.1
3,732,677	+		Sama_3145	0.54	+0.2
3,732,678	-		Sama_3145	0.54	-0.8
3,732,678	-		Sama_3145	0.54	+1.3
3,732,678	-		Sama_3145	0.54	-0.8
3,732,678	-		Sama_3145	0.54	+0.2
3,732,690	-		Sama_3145	0.55	-0.2
3,732,690	-		Sama_3145	0.55	-1.6
3,732,690	-		Sama_3145	0.55	-0.8
3,732,724	+		Sama_3145	0.57	+0.3
3,732,725	-		Sama_3145	0.57	+0.7
3,732,778	+		Sama_3145	0.60	+0.1
3,732,778	+		Sama_3145	0.60	+1.5
3,732,778	+		Sama_3145	0.60	+0.4
3,732,779	-		Sama_3145	0.60	-0.6
3,732,819	+		Sama_3145	0.63	+0.1
3,732,820	-		Sama_3145	0.63	-0.1
3,732,820	-		Sama_3145	0.63	+0.1
3,732,820	-		Sama_3145	0.63	-0.5
3,732,832	+		Sama_3145	0.63	+0.2
3,732,832	+		Sama_3145	0.63	+0.3
3,732,833	-		Sama_3145	0.63	+0.4
3,732,890	+		Sama_3145	0.67	-1.0
3,732,891	-		Sama_3145	0.67	-0.8
3,732,966	+		Sama_3145	0.72	+1.2
3,732,966	+		Sama_3145	0.72	-1.4
3,732,975	+		Sama_3145	0.72	+1.4
3,732,975	+		Sama_3145	0.72	-0.8
3,732,975	+		Sama_3145	0.72	+1.6
3,732,975	+		Sama_3145	0.72	-0.8
3,732,976	-		Sama_3145	0.72	-1.0
3,732,976	-		Sama_3145	0.72	-0.3
3,732,976	-		Sama_3145	0.72	-0.3
3,732,991	+		Sama_3145	0.73	+0.1
3,732,991	+		Sama_3145	0.73	-1.4
3,732,991	+		Sama_3145	0.73	+1.0
3,733,028	+		Sama_3145	0.75	+0.7
3,733,028	+		Sama_3145	0.75	-0.1
3,733,028	+		Sama_3145	0.75	-1.1
3,733,076	+		Sama_3145	0.78	+0.8
3,733,091	+		Sama_3145	0.79	+0.4
3,733,107	-		Sama_3145	0.80	+0.7
3,733,107	-		Sama_3145	0.80	-0.3
3,733,149	-		Sama_3145	0.83	-2.1
3,733,149	-		Sama_3145	0.83	+0.5
3,733,160	+		Sama_3145	0.83	-2.9
3,733,160	+		Sama_3145	0.83	+1.1
3,733,167	+		Sama_3145	0.84	-1.0
3,733,167	+		Sama_3145	0.84	+0.6
3,733,167	+		Sama_3145	0.84	+0.1
3,733,167	+		Sama_3145	0.84	+0.8
3,733,168	-		Sama_3145	0.84	+1.3
3,733,209	-		Sama_3145	0.86	-0.0
3,733,209	-		Sama_3145	0.86	+0.5
3,733,210	+		Sama_3145	0.86	+0.6
3,733,210	+		Sama_3145	0.86	+0.3
3,733,210	+		Sama_3145	0.86	-0.3
3,733,211	-		Sama_3145	0.87	-2.2
3,733,211	-		Sama_3145	0.87	-0.2
3,733,211	-		Sama_3145	0.87	-0.1
3,733,211	-		Sama_3145	0.87	+1.0
3,733,211	-		Sama_3145	0.87	+1.1
3,733,211	-		Sama_3145	0.87	+1.4
3,733,211	-		Sama_3145	0.87	+0.6
3,733,323	+				+0.0
3,733,324	-				+0.9
3,733,335	+				+1.2
3,733,335	+				+0.3
3,733,335	+				-1.0
3,733,335	+				-0.0
3,733,335	+				-0.7
3,733,336	-				-0.4
3,733,336	-				+0.1
3,733,385	+				+0.1
3,733,385	+				-0.7
3,733,386	-				-0.3
3,733,419	+				-0.2
3,733,419	+				+2.6
3,733,419	+				+0.1
3,733,420	-				+0.7
3,733,512	+				+2.3
3,733,546	+				-0.3
3,733,601	+				+0.8
3,733,601	+				-0.1
3,733,601	+				+0.1
3,733,601	+				-0.9
3,733,601	+				-0.5
3,733,601	+				+0.4
3,733,601	+				-0.4
3,733,602	-				+0.3
3,733,604	+				+0.0
3,733,785	+		Sama_3146	0.17	-2.7
3,733,785	+		Sama_3146	0.17	-0.6
3,733,785	+		Sama_3146	0.17	+0.7
3,733,785	+		Sama_3146	0.17	-1.9
3,733,786	-		Sama_3146	0.17	-0.6
3,733,786	-		Sama_3146	0.17	+0.0
3,733,786	-		Sama_3146	0.17	+1.0
3,733,801	+		Sama_3146	0.18	+0.3
3,733,801	+		Sama_3146	0.18	+0.1
3,733,802	-		Sama_3146	0.18	+0.1
3,733,852	+		Sama_3146	0.21	-0.5
3,733,852	+		Sama_3146	0.21	+0.2
3,733,853	-		Sama_3146	0.21	-0.1
3,733,858	+		Sama_3146	0.21	-0.5
3,733,858	+		Sama_3146	0.21	-1.1
3,734,147	+		Sama_3146	0.39	+0.4
3,734,270	-		Sama_3146	0.46	-1.4
3,734,270	-		Sama_3146	0.46	-1.4